Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C1orf66 Gene 0 28.49 25.92 39.89 47.32 24.04 33.25 13.63 35.59 33.25 41.41 31.06 19.06 21.56 61.92 75.96 56.68 48.55 50.01 40.76 37.95 32.02 27.87 35.29 2 368218 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 368216 Transcript 0 37.86 19.14 37.81 42.33 13.90 43.01 7.63 25.04 23.80 37.87 32.24 3.41 11.28 54.43 98.51 62.82 35.76 38.85 30.14 23.97 17.47 16.57 26.05 4 484742 Transcript 0 0.07 5.06 2.82 1.02 0.09 1.95 0.04 0.20 1.02 0.32 0.00 1.75 9.83 6.94 6.79 4.56 0.00 0.22 1.56 0.05 0.00 0.00 3.05 5 476229 Transcript 0 0.00 15.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 462397 Transcript 0 8.97 13.02 9.34 17.30 12.09 20.42 7.27 9.05 8.47 9.63 8.62 1.75 4.20 15.31 11.20 12.82 6.76 11.43 16.44 6.70 6.74 6.72 4.67 7 497515 Transcript 0 21.41 7.96 7.68 13.12 11.82 11.33 3.58 7.79 6.39 3.99 2.80 7.58 8.83 7.88 10.70 6.26 4.97 7.00 4.67 4.49 5.33 6.03 6.45 8 481920 Transcript 1 15.68 12.51 9.16 9.70 12.95 8.87 9.09 6.46 6.26 8.37 4.73 15.46 15.47 10.44 17.93 13.49 9.65 8.78 12.38 16.90 5.53 5.10 14.03 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E1_Ab KnownBoundary 0 3.04 0.00 11.24 3.30 0.00 7.95 6.40 2.14 5.99 17.30 20.58 0.00 0.00 30.61 8.90 31.19 8.70 4.77 4.14 29.15 15.14 6.00 19.89 11 ER1b ExonRegion 0 14.36 22.81 39.64 42.21 17.63 29.13 10.73 35.60 24.54 42.45 40.29 17.07 24.20 70.76 79.46 62.23 59.18 74.94 52.97 43.75 38.21 28.25 37.51 12 E1_Da NovelBoundary 1 17.19 97.48 43.26 78.41 41.77 20.44 27.20 25.71 28.01 21.27 7.42 18.91 34.74 79.99 66.14 69.04 25.15 58.49 42.07 27.36 11.43 32.09 29.71 13 E1a_E3a KnownJunction 0 36.45 15.85 34.98 51.11 76.40 71.61 17.71 44.07 22.86 56.03 44.96 18.01 53.24 75.23 108.04 101.43 57.22 52.11 56.10 20.20 24.09 47.88 31.76 14 I1 Intron 0 16.16 29.98 10.96 23.82 13.14 13.00 12.28 17.56 16.57 21.44 15.81 28.82 9.71 35.49 41.84 28.37 27.01 18.54 30.41 27.85 9.03 21.59 12.81 15 I1_SR1 SilentIntronRegion 0 1.46 11.95 1.61 0.26 3.68 3.78 2.48 4.86 4.01 2.01 3.50 9.20 4.69 12.69 18.13 7.99 6.19 8.66 4.58 11.17 0.00 10.55 1.65 16 I1_AR1 ActiveIntronRegion 0 17.75 32.04 11.97 26.33 14.19 14.03 13.35 18.95 17.94 23.54 17.17 31.02 10.30 38.06 44.55 30.64 29.28 19.69 33.21 29.75 9.99 22.89 14.02 17 E2_Aa NovelBoundary 1 82.76 133.33 20.73 19.81 63.07 24.02 37.32 31.05 21.09 22.43 22.06 73.07 88.31 76.34 39.19 48.11 26.74 21.60 25.69 35.79 8.09 43.78 22.62 18 ER2a ExonRegion 1 0.14 10.12 1.98 0.67 0.17 1.68 0.08 0.40 0.66 0.63 0.00 3.50 19.66 11.47 13.58 1.01 0.00 0.43 3.12 0.09 0.00 0.00 2.69 19 E2_Da NovelBoundary 1 96.31 78.34 26.14 76.55 61.29 61.39 33.25 58.82 35.65 53.16 26.48 75.92 146.58 77.46 73.06 119.11 50.02 33.87 87.63 66.86 14.21 43.35 27.06 20 E2a_E3a KnownJunction 0 0.00 0.00 3.67 1.37 0.00 2.21 0.00 0.00 1.39 0.00 0.00 0.00 0.00 2.41 0.00 8.12 0.00 0.00 0.00 0.00 0.00 0.00 3.41 21 I2 Intron 0 19.16 18.70 13.12 23.05 16.14 10.27 5.71 15.17 11.90 13.01 11.66 33.59 38.18 31.94 33.29 28.61 23.71 10.05 28.37 19.56 14.56 15.27 16.03 22 I2_AR1 ActiveIntronRegion 0 28.60 26.59 23.88 40.71 31.49 15.19 9.23 26.95 20.83 17.87 26.12 84.11 86.34 55.43 64.05 55.66 43.17 16.05 65.26 39.86 17.27 28.15 23.04 23 I2_AR2 ActiveIntronRegion 0 20.16 21.24 11.21 20.59 12.33 11.27 5.69 13.45 10.74 15.23 6.53 10.33 14.58 28.06 25.27 21.91 20.28 10.16 14.68 13.73 18.96 12.80 18.04 24 E3_Aa NovelBoundary 0 53.12 59.66 20.93 22.91 69.27 13.86 16.25 28.30 10.85 30.38 12.27 6.30 0.00 47.85 41.29 36.49 17.11 34.70 14.21 42.25 23.41 9.06 24.50 25 ER3a ExonRegion 0 37.25 20.10 44.74 76.91 55.58 64.39 20.24 52.00 36.56 70.78 45.67 20.04 39.53 98.89 84.55 115.91 54.89 47.57 51.33 37.33 21.79 42.68 35.32 26 E3_Ab KnownBoundary 0 46.08 24.01 61.68 107.45 74.53 92.33 27.12 84.94 65.22 87.27 54.54 24.61 41.23 95.83 82.08 158.51 73.87 61.89 69.65 62.77 29.71 54.87 46.01 27 ER3b ExonRegion 0 36.07 27.66 43.70 70.51 40.64 42.85 20.87 55.21 53.29 70.60 51.03 25.54 39.19 93.64 77.53 91.11 65.98 47.38 56.56 41.06 42.34 36.53 54.92 28 E3_Da KnownBoundary 0 26.67 20.52 28.92 60.90 33.62 24.59 7.91 36.06 40.91 40.70 38.43 0.00 26.78 65.63 40.42 67.42 24.96 54.06 43.30 35.79 22.05 22.35 50.62 29 E3a_E3c KnownJunction 0 21.49 17.50 26.20 28.63 8.23 14.93 11.57 4.48 17.27 32.69 18.74 24.16 33.11 48.38 44.63 44.43 18.05 17.16 40.00 8.88 16.62 18.74 43.19 30 ER3c ExonRegion 0 23.17 26.13 30.86 42.24 36.80 29.64 14.87 42.20 37.07 36.36 33.00 10.25 11.41 62.39 41.33 60.48 44.26 66.24 47.30 42.45 25.22 18.05 31.22 31 E3_Ac KnownBoundary 0 39.04 24.01 29.06 38.66 22.67 12.61 22.35 28.63 31.86 36.48 26.16 19.81 24.51 52.80 19.53 45.03 40.21 57.83 46.31 47.62 26.32 14.51 15.62 32 ER3d ExonRegion 0 35.29 37.38 62.10 61.12 44.82 60.95 20.41 59.52 57.96 65.16 52.81 19.51 26.04 95.88 100.58 89.74 83.49 75.07 57.27 43.69 50.19 47.38 74.59 33 E3_Db NovelBoundary 0 0.00 15.26 2.69 3.23 11.29 13.86 2.03 11.91 8.88 5.48 0.00 6.30 0.00 11.36 8.90 16.32 8.51 17.82 4.80 3.20 0.00 8.33 13.83 34 E3b_E4a KnownJunction 0 41.71 51.31 58.66 61.33 41.00 65.30 16.30 76.81 67.71 76.13 48.91 28.96 20.45 98.59 94.20 96.98 108.74 77.97 48.75 33.75 58.19 51.99 71.71 35 E3b_E5a KnownJunction 0 0.00 15.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E4_Aa NovelBoundary 0 6.52 2.70 19.75 17.58 6.71 11.58 10.60 9.61 9.37 9.94 2.53 12.60 0.00 7.00 15.95 12.22 9.26 11.03 9.60 11.95 6.30 0.00 12.21 37 ER4a ExonRegion 0 42.10 24.73 45.84 55.01 19.24 50.09 8.26 46.50 51.89 65.92 50.26 34.09 22.93 83.11 117.94 71.90 86.98 70.36 58.35 33.13 56.81 46.40 71.97 38 E4_Da NovelBoundary 0 3.41 11.84 9.79 12.29 0.00 16.30 1.85 15.28 4.72 4.67 10.06 6.30 0.00 7.12 0.00 11.54 8.88 12.52 7.34 12.27 2.53 8.14 8.71 39 E4a_E5a KnownJunction 0 33.64 27.63 42.84 54.94 21.31 40.66 6.18 38.57 48.49 57.86 33.96 18.91 33.28 87.70 111.50 65.28 77.42 70.89 42.26 29.15 66.23 33.07 56.25 40 E5_Aa NovelBoundary 0 0.00 6.38 14.28 16.51 7.98 0.00 0.00 8.75 4.60 8.89 2.68 0.00 0.00 7.06 17.80 11.28 4.77 10.65 3.95 9.01 5.87 0.00 15.37 41 ER5a ExonRegion 0 56.55 43.21 66.28 73.62 30.58 61.72 22.12 62.17 59.41 72.48 43.69 25.57 14.75 98.75 93.20 87.21 81.53 72.56 64.87 43.22 63.66 45.88 63.41 42 E5_Ab KnownBoundary 0 41.04 45.19 42.67 64.83 39.73 74.90 12.90 47.65 50.81 66.94 41.22 17.71 6.82 81.41 107.18 63.91 54.60 40.50 63.91 67.69 73.64 49.29 35.51 43 E5_Da NovelBoundary 0 38.08 54.07 30.51 53.81 43.97 77.91 12.98 35.86 40.57 53.86 46.38 23.56 13.64 89.59 105.45 76.48 91.26 57.91 72.76 57.97 43.74 46.23 76.91 44 ER5b ExonRegion 0 40.53 56.23 52.32 77.96 41.34 93.62 14.96 57.30 57.99 80.63 48.23 17.32 14.07 101.18 123.16 90.06 93.42 79.36 77.09 76.28 73.05 58.13 65.34 45 E5_Db KnownBoundary 0 14.37 33.28 22.94 39.42 11.63 18.40 16.69 18.48 17.25 25.17 14.74 12.60 6.82 22.19 33.99 25.04 18.51 28.69 33.32 3.00 17.11 20.70 15.02 46 E5b_E6a KnownJunction 0 52.75 20.52 39.97 46.15 19.78 77.57 7.60 28.14 24.33 51.04 55.28 0.00 21.10 61.75 76.15 72.46 44.69 53.43 40.10 28.25 19.89 26.76 33.12 47 E5b_E7b KnownJunction 0 10.59 0.00 4.20 3.60 8.23 2.50 2.25 8.13 14.53 4.11 2.16 5.55 0.00 6.71 24.72 4.36 8.98 29.31 23.06 12.02 15.01 13.72 16.65 48 ER5c ExonRegion 0 48.76 51.78 57.02 75.83 40.14 98.11 19.20 48.09 55.67 75.08 64.20 15.46 23.79 106.67 115.32 98.50 96.43 95.95 91.92 57.52 59.03 60.27 76.98 49 ER5d ExonRegion 0 17.94 26.05 18.68 34.60 24.18 40.83 14.54 18.09 16.94 19.26 17.23 3.50 8.40 30.61 22.41 25.65 13.52 22.86 32.89 13.39 13.47 13.43 9.34 50 E5_Dc NovelBoundary 0 11.11 33.81 28.83 53.67 62.22 46.68 10.86 44.69 25.35 21.41 16.21 0.00 6.82 45.26 36.34 61.01 25.99 28.11 30.31 30.17 26.44 24.37 11.69 51 E5c_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 I5 Intron 0 7.50 11.65 6.97 9.42 7.30 6.50 5.78 7.73 6.53 6.53 6.85 9.93 9.33 15.56 18.52 22.70 5.40 7.02 6.95 8.12 4.81 2.27 12.01 53 I5_AR1 ActiveIntronRegion 1 1.56 10.70 2.45 2.73 5.70 3.19 3.97 3.46 0.00 2.24 3.45 0.00 15.91 10.80 7.44 17.96 0.00 1.77 11.91 9.16 3.26 0.00 11.49 54 I5_SR1 SilentIntronRegion 0 8.55 12.05 7.79 10.60 7.71 7.09 6.16 8.52 7.63 7.30 7.45 11.61 8.47 16.62 20.54 23.91 6.31 7.95 6.37 8.16 5.14 2.66 12.37 55 E6_Aa NovelBoundary 1 33.34 26.84 39.27 46.75 46.60 39.75 16.61 21.44 17.53 24.07 12.42 19.66 33.28 23.72 40.92 57.59 9.16 19.98 53.27 30.30 8.65 17.45 32.52 56 ER6a ExonRegion 0 28.61 17.08 47.13 54.12 10.48 42.81 14.51 28.44 33.32 46.55 29.43 14.19 13.26 63.29 85.25 63.93 38.54 44.96 28.17 37.61 28.57 22.04 33.65 57 E6_Da KnownBoundary 0 24.23 6.05 64.90 63.36 12.99 49.86 5.74 34.01 40.25 57.40 48.91 18.01 20.78 64.81 107.05 35.38 45.16 49.29 62.78 57.85 33.85 26.15 38.93 58 ER6b ExonRegion 0 23.11 18.67 39.78 44.36 10.13 31.65 9.66 27.09 27.43 34.57 27.86 4.22 6.40 64.00 95.02 45.94 42.22 37.64 25.38 32.27 20.90 12.55 27.52 59 E6_Db NovelBoundary 0 3.48 0.00 7.63 3.30 11.12 8.12 2.08 0.00 9.46 7.01 0.00 0.00 7.14 13.71 4.45 26.66 3.83 13.93 18.73 8.31 2.97 3.06 22.71 60 E6b_E7b KnownJunction 1 37.71 18.22 33.68 36.49 11.80 19.82 5.65 19.88 19.65 28.02 13.58 6.00 6.33 37.55 124.36 70.07 20.38 25.49 24.94 11.38 11.61 10.41 17.50 61 I6 Intron 0 11.50 7.86 8.10 10.76 26.81 13.90 6.82 6.64 5.52 8.08 3.04 8.09 12.29 21.23 12.88 12.35 11.83 6.45 8.64 5.49 3.45 5.67 14.72 62 I6_SR1 SilentIntronRegion 0 12.49 8.53 8.79 11.68 29.10 15.09 7.40 7.20 5.99 8.77 3.29 8.78 13.34 23.04 13.98 13.40 12.84 7.00 9.38 5.95 3.75 6.16 15.97 63 E7_Aa NovelBoundary 0 53.12 30.65 4.14 31.86 19.78 18.23 5.34 10.51 12.90 9.54 4.26 6.30 20.45 22.49 13.35 32.90 8.79 8.66 9.04 18.41 11.86 16.59 15.02 64 ER7a ExonRegion 0 35.51 14.08 14.35 22.51 20.97 20.49 6.09 14.01 12.22 7.68 4.91 15.15 10.42 11.77 14.81 12.52 9.93 11.32 6.74 7.63 10.07 11.68 10.76 65 E7_Ab KnownBoundary 0 21.11 24.07 30.87 46.38 35.82 30.66 5.43 29.24 17.33 7.66 2.42 5.40 6.82 22.19 13.35 19.48 25.81 14.47 29.55 17.13 8.90 25.41 11.87 66 ER7b ExonRegion 0 43.55 37.67 69.86 85.91 25.16 32.77 13.99 58.77 53.29 53.56 39.37 34.33 24.19 79.71 142.89 78.41 59.25 65.03 41.72 51.86 58.63 50.41 40.95 67 E7_Da NovelBoundary 0 13.63 13.42 9.55 8.46 8.40 13.34 11.92 10.93 6.19 13.00 2.42 0.00 13.47 4.94 25.34 3.76 18.51 3.94 3.86 6.52 6.30 0.00 11.18 68 E7a_E9a KnownJunction 0 13.78 42.76 75.28 90.40 39.22 45.37 16.25 61.41 57.18 49.88 43.43 40.36 19.48 110.01 170.10 94.68 71.15 70.80 38.87 38.35 33.73 54.07 35.08 69 E8_Aa NovelBoundary 1 223.74 136.49 46.48 74.35 91.43 143.72 143.48 28.59 42.91 22.89 23.90 48.92 60.22 44.97 46.36 177.05 47.97 64.75 186.83 179.74 56.71 77.58 172.43 70 ER8a ExonRegion 1 31.35 25.01 18.32 19.40 25.89 17.73 18.19 12.92 12.53 16.74 9.47 30.92 30.93 20.89 35.85 26.99 19.30 17.55 24.75 33.80 11.06 10.20 28.05 71 E8_Da NovelBoundary 0 34.52 19.86 9.73 32.23 0.00 2.56 17.31 11.09 15.48 21.22 10.06 0.00 0.00 6.77 13.35 15.38 19.07 11.11 34.82 14.64 6.24 5.14 19.04 72 E8a_E9b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73 E9_Aa NovelBoundary 0 52.08 21.44 30.37 56.14 44.82 12.49 2.21 52.78 14.53 32.77 5.37 0.00 0.00 32.14 18.30 34.26 4.68 32.38 32.75 26.01 8.09 7.47 11.27 74 ER9a ExonRegion 0 29.21 45.39 82.32 92.10 58.55 53.40 15.57 76.19 66.52 60.33 42.37 31.43 26.08 108.72 148.95 110.98 73.21 71.43 67.66 63.36 47.16 60.05 42.82 75 E9_Ab KnownBoundary 0 40.90 65.05 100.77 114.70 53.99 62.01 17.58 96.65 88.37 74.70 40.12 55.07 25.81 96.53 182.34 92.97 75.92 59.07 71.91 74.40 49.73 36.19 39.61 76 ER9b ExonRegion 0 53.01 33.26 54.26 77.01 30.40 26.39 14.83 50.95 67.79 65.77 28.07 27.39 31.43 67.91 97.17 63.38 64.35 38.24 44.12 47.37 41.12 54.95 23.11 77 E9_Da KnownBoundary 1 53.27 40.12 49.44 53.34 29.71 28.11 26.94 44.36 43.11 41.23 10.37 48.17 53.41 46.09 39.06 35.29 15.99 17.12 30.68 31.58 23.10 13.23 11.95 78 ER9c ExonRegion 1 29.14 18.73 22.42 21.81 23.17 23.72 12.45 18.02 15.45 17.81 6.00 18.15 29.54 42.30 42.84 21.31 6.81 9.95 17.89 21.00 13.46 19.90 5.87 79 ER9d ExonRegion 0 7.31 1.85 1.00 3.72 2.68 2.17 1.08 1.57 0.56 0.31 0.70 0.00 7.25 3.99 6.59 0.00 0.00 2.69 2.61 1.35 0.60 0.38 2.14