Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HAPLN2 Gene 0 0.72 2.13 4.32 5.45 1.77 2.30 0.69 14.42 23.00 7.51 0.18 0.08 0.00 0.13 0.23 0.00 0.00 3.43 1.52 3.24 0.10 0.09 0.13 2 255039 Transcript 0 0.31 0.99 1.15 1.79 3.10 2.10 0.00 3.35 3.70 1.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.56 0.29 0.00 0.00 0.00 3 487988 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 456112 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 477201 Transcript 0 0.00 0.00 0.56 0.00 0.00 0.00 0.00 1.27 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 482204 Transcript 0 0.00 0.36 3.17 6.17 0.16 5.50 0.86 9.56 15.11 2.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.19 4.13 0.00 0.00 0.00 7 494218 Transcript 0 0.00 1.14 3.16 3.40 1.43 1.10 0.85 9.66 19.96 9.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.48 4.80 2.27 0.00 0.01 0.00 8 IG44 Intergenic 0 2.27 9.17 6.44 14.00 8.46 4.30 2.45 18.29 31.71 7.78 0.12 1.06 0.21 0.42 0.73 0.60 0.30 3.19 2.98 5.37 0.36 0.22 0.48 9 IG44_SR1 SilentIntergenicRegion 0 6.87 22.01 16.91 24.67 13.51 7.72 5.10 30.05 35.13 13.36 1.16 2.17 0.00 2.02 5.15 2.14 0.79 8.62 8.81 14.07 1.06 0.50 0.00 10 IG44_SR2 SilentIntergenicRegion 0 2.40 9.71 7.02 15.24 9.52 4.61 2.80 20.34 33.62 8.26 0.07 1.36 0.24 0.40 0.60 0.60 0.26 3.12 3.02 5.69 0.42 0.30 0.56 11 IG44_AR2 ActiveIntergenicRegion 0 0.80 3.44 1.40 7.91 5.18 5.01 1.71 12.54 27.16 9.25 0.00 0.00 0.00 0.26 0.00 0.96 1.24 0.32 0.53 3.91 0.00 0.00 0.00 12 IG44_SR3 SilentIntergenicRegion 0 0.20 4.31 4.77 8.43 5.93 2.81 1.03 13.73 33.00 7.11 0.00 0.00 0.36 0.12 0.19 0.00 0.00 4.43 2.94 3.56 0.20 0.00 1.07 13 IG44_AR3 ActiveIntergenicRegion 0 0.25 6.56 3.41 14.17 6.70 4.04 1.52 11.26 30.26 6.98 0.00 0.52 0.46 0.16 0.00 0.71 0.00 1.93 1.90 1.52 0.26 0.00 0.01 14 IG44_SR4 SilentIntergenicRegion 0 0.97 6.49 2.30 6.26 4.15 1.06 0.91 6.22 16.67 1.65 0.00 0.43 0.00 0.01 0.11 0.00 0.22 0.61 0.36 2.79 0.00 0.00 0.29 15 IG44_AR4 ActiveIntergenicRegion 0 4.53 6.37 2.83 10.61 3.66 2.81 1.00 17.71 29.87 4.25 0.00 0.00 0.00 0.23 0.33 0.00 0.21 3.49 2.92 3.08 0.00 0.00 0.55 16 ER1a ExonRegion 0 0.06 1.98 1.81 3.59 6.20 4.20 0.00 6.32 5.92 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.09 0.00 0.00 0.00 0.00 0.00 17 E1_Ab KnownBoundary 0 0.00 3.03 6.03 19.15 12.31 8.29 0.00 32.08 24.51 3.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.80 0.00 0.00 0.00 0.00 0.00 18 ER1b ExonRegion 0 1.14 2.54 7.35 12.00 6.67 4.16 2.65 23.42 27.50 8.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.25 0.00 2.10 0.00 0.00 0.00 19 E1_Ac KnownBoundary 0 0.00 0.00 7.33 9.69 12.22 0.00 3.62 10.31 22.48 7.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 0.00 3.13 0.00 0.00 0.00 20 E1_Ad KnownBoundary 0 0.00 0.00 0.00 2.06 4.33 0.00 0.00 10.19 1.71 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 21 E1_Ae KnownBoundary 0 0.00 3.03 1.12 8.32 0.00 0.00 0.00 19.18 21.53 4.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.81 0.00 12.02 0.00 0.00 0.00 22 ER1c ExonRegion 0 0.00 1.09 6.32 15.73 10.09 1.13 1.83 23.13 31.64 11.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.84 0.00 8.18 0.00 0.00 0.00 23 ER1d ExonRegion 0 0.00 2.03 5.72 17.26 7.73 0.00 0.74 25.73 35.27 11.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.54 0.00 9.46 0.00 0.00 0.00 24 ER1e ExonRegion 0 1.21 4.34 3.65 9.92 4.33 0.00 2.20 24.99 38.73 9.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.98 1.83 4.18 0.00 0.00 0.00 25 E1_Da NovelBoundary 0 0.00 2.83 12.80 4.10 0.00 5.45 2.03 15.32 38.19 12.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.14 0.00 9.20 0.00 0.00 3.93 26 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.77 2.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.40 0.00 0.00 0.00 0.00 0.00 27 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 3.99 0.00 0.00 6.53 3.24 9.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.15 0.00 0.00 0.00 0.00 0.00 28 I1 Intron 0 1.75 6.95 3.01 11.48 5.99 2.82 2.03 10.92 41.61 10.47 0.00 0.00 0.00 0.16 0.00 0.00 0.00 4.98 5.25 3.76 0.26 0.49 1.38 29 I1_AR1 ActiveIntronRegion 0 1.75 6.98 3.03 11.53 6.02 2.83 2.04 10.97 41.80 10.52 0.00 0.00 0.00 0.16 0.00 0.00 0.00 5.00 5.28 3.78 0.26 0.49 1.39 30 E2_Aa NovelBoundary 0 3.41 2.89 5.20 8.99 4.07 2.90 0.00 21.85 23.03 12.95 2.68 0.00 0.00 0.00 0.00 0.00 0.00 9.66 4.80 5.94 2.84 0.00 0.00 31 ER2a ExonRegion 0 0.51 3.38 3.43 3.73 1.98 0.00 2.54 21.61 29.62 6.47 0.00 0.00 0.00 0.84 0.00 0.00 0.00 3.29 1.40 8.47 0.00 0.00 0.00 32 E2_Ab KnownBoundary 0 3.11 5.66 5.26 11.12 8.32 0.00 0.00 44.44 57.64 12.68 0.00 0.00 0.00 2.47 0.00 0.00 0.00 4.23 4.80 14.38 0.00 0.00 0.00 33 ER2b ExonRegion 0 2.13 8.93 7.40 9.33 5.64 3.81 1.19 36.47 47.74 16.64 1.41 0.00 0.00 0.19 0.48 0.00 0.00 4.72 2.98 7.74 1.05 0.00 0.00 34 E2a_E3a KnownJunction 0 0.00 3.35 9.17 6.36 10.78 2.27 3.89 23.86 51.27 12.79 0.00 0.00 0.00 0.00 4.45 0.00 0.00 5.72 0.00 2.49 2.84 0.00 0.00 35 ER3a ExonRegion 0 2.27 3.12 10.31 7.06 5.57 7.84 1.08 26.75 41.73 8.65 0.00 0.00 0.00 0.00 0.35 0.00 0.00 4.32 0.26 4.27 0.71 0.00 0.00 36 E3_Da KnownBoundary 0 6.96 0.00 5.23 5.16 3.40 0.00 0.00 25.42 37.07 5.43 0.00 5.85 0.00 0.00 0.00 0.00 0.00 5.80 3.76 3.26 0.00 0.00 0.00 37 E3a_E3b KnownJunction 0 0.00 0.00 1.42 5.46 3.82 0.00 0.00 5.09 10.27 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.24 0.00 0.00 0.00 38 E3a_E3c KnownJunction 0 0.00 0.00 1.12 0.00 0.00 0.00 0.00 2.55 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER3b ExonRegion 0 1.36 2.41 6.26 4.10 1.39 1.15 0.60 12.33 25.73 6.04 0.92 0.85 0.00 0.00 0.00 0.00 0.00 3.63 2.52 4.40 0.00 0.00 0.00 40 E3_Db KnownBoundary 0 0.00 0.00 8.01 8.66 0.00 0.00 0.00 11.34 12.50 5.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 4.80 6.14 0.00 0.00 0.00 41 E3_Ab KnownBoundary 0 0.00 0.00 4.61 1.33 0.00 8.40 1.81 7.80 20.17 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 ER3c ExonRegion 0 0.00 0.36 3.17 6.17 0.16 5.50 0.86 9.56 15.11 2.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.19 4.13 0.00 0.00 0.00 43 ER3d ExonRegion 0 0.00 1.88 5.57 4.90 0.33 2.40 0.49 15.99 21.69 4.90 0.00 0.00 0.00 0.83 0.00 0.00 0.00 4.35 0.24 4.12 0.00 0.00 1.40 44 E3_Dc KnownBoundary 0 0.00 0.00 1.15 1.70 0.00 0.00 0.00 10.56 7.96 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.31 0.00 2.68 0.00 0.00 0.00 45 E3c_E3c NovelJunction 0 0.00 0.00 3.05 11.52 0.00 0.00 0.00 7.02 16.61 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.06 0.00 6.39 0.00 0.00 0.00 46 E3_Ac KnownBoundary 0 0.00 0.00 3.10 4.00 0.00 2.50 0.00 1.81 9.98 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.67 0.00 3.26 0.00 0.00 0.00 47 ER3e ExonRegion 0 0.00 0.00 6.74 6.81 0.00 1.83 0.00 11.23 21.61 2.29 0.00 0.00 0.00 1.62 0.00 0.00 0.00 11.09 0.00 8.51 0.00 0.00 0.00 48 ER3f ExonRegion 0 0.00 2.51 5.06 4.88 0.00 2.66 0.00 13.05 23.64 8.96 0.00 0.00 0.00 0.40 0.00 0.00 0.00 8.56 2.73 2.43 0.00 0.00 0.00 49 E3_Ad KnownBoundary 0 0.00 6.64 9.88 1.86 0.00 2.90 0.00 21.69 34.17 11.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.62 8.47 9.65 0.00 0.00 0.00 50 ER3g ExonRegion 0 1.12 2.61 5.77 1.92 0.00 2.20 0.87 18.72 30.18 16.89 0.00 0.00 0.00 0.71 0.00 0.00 0.00 7.41 0.86 3.30 0.00 0.80 1.56 51 E3_Dd KnownBoundary 0 0.00 0.00 1.66 3.56 0.00 2.50 2.25 16.27 31.51 9.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.53 0.00 0.00 0.00 0.00 0.00 52 E3d_E3e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.21 4.56 6.94 6.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.76 0.00 53 E3d_E3f KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 ER3h ExonRegion 0 0.00 1.14 3.16 3.40 1.43 1.10 0.85 9.66 19.96 9.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.48 4.80 2.27 0.00 0.01 0.00 55 E3_Ae KnownBoundary 0 0.00 9.34 0.00 4.93 0.00 0.00 0.00 13.80 16.17 12.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.24 4.71 0.00 0.00 0.00 0.00 56 ER3i ExonRegion 0 0.77 2.78 2.21 7.11 0.98 2.24 0.58 16.40 22.71 14.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 4.26 0.00 0.66 0.00 57 E3_Af KnownBoundary 0 3.33 2.63 3.61 10.72 7.64 2.44 0.00 17.95 24.42 13.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.51 0.00 0.00 0.00 58 ER3j ExonRegion 0 1.02 1.11 4.56 10.36 2.39 6.26 0.00 19.34 23.25 14.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.21 7.29 0.00 0.00 0.00 59 E3e_E4a KnownJunction 0 0.00 0.00 6.45 7.09 4.33 0.00 0.00 24.07 26.91 13.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.13 0.00 0.00 0.00 60 ER4a ExonRegion 0 0.36 0.34 5.04 4.68 0.29 1.53 1.11 11.13 23.51 9.02 0.00 0.00 0.00 0.00 0.57 0.00 0.00 1.53 0.92 1.83 0.00 0.58 0.00 61 E4a_E5a KnownJunction 0 7.41 3.35 2.66 6.76 0.00 0.00 0.00 9.00 16.90 4.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 0.00 0.00 62 ER5a ExonRegion 0 0.92 0.88 1.52 1.36 0.00 1.16 0.00 12.02 15.25 3.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 3.05 2.68 0.00 0.00 0.00 63 E5_Da KnownBoundary 0 0.00 0.00 3.34 3.83 0.00 2.90 0.00 16.31 22.80 3.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.65 0.00 5.43 0.00 0.00 0.00 64 ER5b ExonRegion 0 0.28 1.07 1.82 6.16 0.35 2.27 0.00 8.06 14.25 3.08 0.00 0.00 0.00 0.00 0.81 0.00 0.00 1.76 0.29 1.71 0.00 0.00 0.00 65 E5_Db KnownBoundary 0 0.00 0.00 0.00 1.70 0.00 0.00 0.00 6.86 1.39 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.42 0.00 0.00 0.00 0.00 66 ER5c ExonRegion 0 0.57 0.00 0.49 0.00 0.00 0.00 0.00 0.38 1.48 0.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.12 0.57 0.00 0.00 0.00