Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 BX571672.6 Gene 0 3.32 17.72 19.80 37.62 19.73 19.03 26.36 28.52 8.38 22.09 2.96 7.01 1.18 2.00 0.91 3.44 1.97 19.06 4.17 17.65 0.37 0.32 0.24 2 412204 Transcript 0 1.04 6.84 5.34 14.35 7.12 5.61 7.98 9.90 2.91 5.85 0.00 0.95 0.00 0.17 0.00 0.24 0.10 2.06 1.14 6.73 0.00 0.15 0.04 3 435913 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 447389 Transcript 0 4.08 9.79 24.81 37.95 18.38 9.37 12.39 22.87 5.61 21.57 0.08 7.85 0.49 0.15 0.12 2.09 0.13 3.51 0.74 1.67 0.00 0.17 0.23 5 413897 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 452738 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 420598 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 422129 Transcript 0 0.68 3.40 4.80 16.00 3.15 8.06 8.86 7.83 1.87 2.47 0.10 0.38 0.21 0.07 0.11 0.96 1.24 2.76 1.37 5.03 0.59 0.22 0.00 9 437267 Transcript 0 0.72 3.77 6.65 11.14 5.63 6.58 8.05 7.65 2.79 7.85 1.74 2.11 0.37 1.61 0.99 2.93 1.60 21.06 2.43 9.24 0.23 0.18 0.11 10 ER1a ExonRegion 0 3.16 29.19 14.39 40.51 30.80 27.79 34.03 46.01 11.75 25.77 0.00 4.76 0.00 0.45 0.00 1.20 0.51 6.83 3.96 17.64 0.00 0.06 0.18 11 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E2_Aa NovelBoundary 0 2.96 6.45 4.55 8.42 12.05 29.24 24.25 24.40 1.79 8.60 0.00 6.30 0.00 0.00 0.00 0.00 0.00 7.46 0.00 0.00 0.00 0.00 0.00 13 ER2a ExonRegion 0 2.05 5.03 12.29 27.10 1.30 0.26 1.36 3.47 2.79 3.50 0.00 0.00 0.00 0.38 0.00 0.00 0.00 3.49 1.72 16.01 0.00 0.71 0.00 14 E2a_E3a KnownJunction 0 0.00 0.00 0.00 4.13 3.48 0.00 4.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER3a ExonRegion 0 0.11 4.85 5.86 13.56 1.55 4.07 8.16 7.97 1.11 2.42 0.98 4.21 0.00 0.60 0.00 0.00 1.19 2.03 0.24 5.06 0.00 0.00 0.00 16 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 4.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER4a ExonRegion 0 2.12 0.00 2.30 5.62 0.00 0.00 6.79 0.00 2.47 2.29 0.00 15.15 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER4b ExonRegion 0 5.45 13.53 5.89 1.42 0.26 8.99 15.17 0.00 2.47 1.30 0.00 25.31 0.00 1.81 0.00 0.00 0.00 0.00 0.00 7.04 0.00 0.00 0.00 20 E4_Ac KnownBoundary 0 7.56 3.35 5.29 1.96 4.33 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.78 0.00 0.00 0.00 21 ER4c ExonRegion 0 3.24 16.31 14.34 20.81 3.65 10.32 14.05 6.63 3.27 3.83 2.37 6.66 0.00 1.84 0.00 0.00 1.09 4.61 5.27 13.13 0.00 0.00 0.00 22 E4a_E5a KnownJunction 0 0.00 0.00 1.42 7.16 8.66 0.00 2.25 1.97 0.00 2.50 2.42 0.00 0.00 2.24 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 23 ER5a ExonRegion 0 2.06 16.72 45.75 76.32 7.67 10.65 25.93 24.43 9.81 18.71 11.06 7.16 10.73 3.61 0.59 0.91 5.11 19.53 11.76 50.06 1.48 0.00 0.00 24 E5_Ab KnownBoundary 0 7.19 52.10 111.17 107.21 33.87 42.31 84.79 51.30 9.95 32.13 20.79 27.61 13.64 18.25 12.61 4.36 13.09 42.24 8.85 112.37 9.08 0.00 0.00 25 ER5b ExonRegion 0 2.77 17.67 36.23 52.78 11.21 26.34 27.89 17.61 6.75 18.63 9.03 5.15 5.66 1.40 1.65 0.97 3.19 20.58 4.12 22.56 1.22 0.00 0.00 26 E5_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER5c ExonRegion 0 0.93 36.23 41.37 62.95 4.40 25.30 19.75 22.67 12.16 16.19 7.14 5.21 8.82 1.24 1.82 0.00 5.09 17.07 2.11 46.99 2.76 0.00 0.00 29 E5_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E5b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 E5b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 E5b_E8a KnownJunction 0 0.00 0.00 5.50 16.91 0.00 0.00 0.00 5.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.81 0.00 6.39 0.00 0.00 0.00 33 E5b_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 ER5d ExonRegion 0 0.00 4.71 6.17 15.13 5.58 5.95 15.36 3.47 0.94 2.25 0.79 0.83 2.88 0.29 0.62 0.00 0.00 4.09 0.00 8.33 0.18 0.00 0.00 35 E5_Dc NovelBoundary 0 6.52 67.69 39.95 106.88 42.02 19.48 116.55 31.83 10.39 20.98 0.00 6.30 15.10 4.71 0.00 4.36 0.00 14.67 0.00 88.01 0.00 0.00 0.00 36 E5_Dd NovelBoundary 0 3.56 19.21 69.78 55.10 15.96 43.27 96.89 40.09 13.40 37.85 0.00 18.91 0.00 0.00 0.00 0.00 4.77 16.50 0.00 65.39 0.00 0.00 0.00 37 ER5e ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 E6_Aa NovelBoundary 0 11.34 15.13 11.65 12.35 33.28 2.56 18.15 52.21 8.42 11.26 0.00 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 2.68 0.00 0.00 0.00 39 ER6a ExonRegion 0 2.12 4.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 40 E6_Da NovelBoundary 0 107.13 38.15 9.70 47.61 126.83 0.00 74.41 44.44 3.47 10.58 0.00 0.00 0.00 0.00 0.00 7.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 Ix Intron 0 2.34 2.24 12.09 25.65 10.83 0.67 1.95 19.26 1.13 8.17 0.00 3.06 0.00 0.00 0.00 0.36 0.00 2.37 0.00 0.52 0.00 0.00 0.00 43 Ix_AR1 ActiveIntronRegion 0 2.98 2.86 14.85 31.76 13.81 0.86 2.49 24.58 1.44 10.41 0.00 3.90 0.00 0.00 0.00 0.46 0.00 3.02 0.00 0.67 0.00 0.00 0.00 44 ER7a ExonRegion 0 8.62 36.68 17.11 33.11 31.56 13.21 22.21 21.99 4.83 21.66 3.44 6.90 8.42 3.43 0.00 3.96 3.00 6.23 7.26 12.57 0.94 0.00 0.00 45 E7_Da KnownBoundary 0 7.56 12.70 18.98 43.15 60.10 30.83 48.27 28.18 7.44 30.78 0.00 6.15 6.17 0.00 0.00 7.43 0.00 1.78 0.00 0.00 0.00 0.00 0.00 46 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 E7a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 ER7b ExonRegion 0 8.15 19.58 49.63 75.89 36.77 18.73 24.78 45.74 11.22 43.14 0.15 15.70 0.98 0.31 0.23 4.17 0.26 7.02 1.48 3.34 0.00 0.33 0.47 49 E7_Db NovelBoundary 0 22.23 160.76 160.34 259.57 185.48 112.66 198.69 117.68 37.59 141.99 22.32 19.96 25.32 6.95 0.00 0.00 18.23 98.45 25.88 213.48 11.06 6.25 12.29 50 E8_Aa NovelBoundary 0 24.15 29.73 24.33 23.04 64.09 31.80 84.79 38.53 14.21 34.73 5.26 6.30 0.00 0.00 0.00 7.60 0.00 56.17 4.80 9.40 0.00 0.00 7.60 51 ER8a ExonRegion 0 6.61 12.15 8.85 22.15 20.07 13.39 26.05 6.74 0.93 13.45 3.62 2.81 8.21 1.02 6.82 1.71 1.65 20.14 5.02 6.06 2.09 0.00 0.00 52 E8_Ab KnownBoundary 0 17.41 53.15 81.46 100.82 73.85 46.45 106.30 44.11 13.72 87.54 25.74 6.30 13.47 6.65 0.00 7.95 0.00 169.75 23.81 133.46 2.35 3.12 0.00 53 ER8b ExonRegion 0 3.44 4.40 5.01 9.40 6.59 8.50 7.27 4.15 0.69 6.88 2.73 0.87 0.23 0.45 1.12 1.04 1.28 10.95 1.55 4.65 0.00 0.00 0.00 54 E8_Da NovelBoundary 0 10.96 18.88 42.78 47.31 60.27 10.39 47.17 56.97 8.91 46.90 0.00 6.30 0.00 0.00 0.00 7.52 0.00 53.97 0.00 17.83 0.00 0.00 0.00 55 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 E8a_E9b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 E8a_E10a NovelJunction 0 0.00 2.70 0.00 14.58 6.62 2.33 17.58 0.00 3.18 1.58 7.00 0.00 0.00 2.41 0.00 0.00 4.77 13.31 8.47 0.00 0.00 0.00 0.00 58 E9_Aa NovelBoundary 0 0.00 0.00 12.83 12.62 4.33 5.11 2.03 6.20 3.18 6.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.49 0.00 0.00 0.00 0.00 0.00 59 E9_Ab NovelBoundary 0 0.00 0.00 6.42 8.59 8.32 0.00 2.16 31.05 1.27 7.90 0.00 12.60 0.00 0.00 0.00 4.10 0.00 22.38 0.00 0.00 0.00 2.51 0.00 60 ER9a ExonRegion 0 0.00 0.00 1.53 2.39 8.70 3.21 2.32 0.00 0.31 1.15 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 ER9b ExonRegion 0 1.26 5.51 4.79 2.34 5.27 5.17 6.24 0.80 0.54 2.52 0.00 0.00 0.00 0.26 1.12 0.94 1.87 5.17 0.00 0.63 0.00 0.00 0.00 62 E9b_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 ER9c ExonRegion 0 0.00 2.03 0.00 1.36 2.68 7.34 2.65 1.73 0.00 1.15 0.00 0.00 0.00 1.62 0.00 2.97 3.30 12.93 0.00 0.00 0.00 0.00 0.00 64 Ix Intron 0 0.71 1.36 6.09 6.09 10.70 6.72 2.21 6.90 0.61 5.13 0.00 0.00 0.00 0.00 0.00 2.97 0.00 21.42 0.00 0.00 0.73 0.00 0.00 65 Ix_AR1 ActiveIntronRegion 0 0.71 1.37 6.17 6.17 10.84 6.81 2.24 6.98 0.62 5.20 0.00 0.00 0.00 0.00 0.00 3.01 0.00 21.71 0.00 0.00 0.74 0.00 0.00 66 ER10a ExonRegion 0 1.43 10.71 22.56 31.26 11.43 19.02 14.27 26.03 12.20 29.18 1.51 2.40 0.87 4.50 2.00 13.00 4.85 128.63 14.31 39.89 1.49 0.47 0.33 67 E10_Da NovelBoundary 0 6.96 32.23 40.80 45.78 24.28 60.42 63.46 27.72 21.41 50.23 12.79 7.05 0.00 19.84 5.81 3.76 8.88 193.55 14.12 62.26 3.09 0.00 0.00 68 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 E11_Aa NovelBoundary 0 6.22 51.44 58.40 140.61 51.87 108.29 147.77 40.38 79.22 103.93 46.27 17.56 0.00 12.13 10.01 68.27 121.55 559.91 125.18 420.32 28.48 5.20 14.94 70 ER11a ExonRegion 0 4.34 17.39 23.57 37.17 22.21 23.11 45.15 28.33 9.85 31.37 12.38 14.44 2.12 6.78 3.04 7.43 4.63 22.12 5.10 27.67 0.33 0.94 0.59 71 E11_Da NovelBoundary 0 12.89 62.55 50.26 120.90 104.50 109.03 258.93 64.28 51.74 137.64 4.79 25.21 6.33 5.65 0.00 7.60 4.11 61.31 14.02 109.55 0.00 0.00 3.76 72 Ix_AR1 ActiveIntronRegion 0 5.54 14.53 35.33 43.51 14.62 10.86 49.23 41.14 7.00 34.88 0.05 14.33 1.00 0.71 0.00 3.74 0.00 17.57 2.40 12.20 0.40 0.38 0.27 73 Ix Intron 0 0.49 3.75 7.80 17.12 1.85 6.35 7.18 7.13 6.37 9.07 0.45 0.41 0.45 0.73 0.00 1.03 1.14 15.59 4.04 22.09 0.51 0.24 0.00 74 Ix_SR1 SilentIntronRegion 0 0.49 3.76 7.81 17.16 1.86 6.36 7.20 7.15 6.39 9.09 0.45 0.41 0.45 0.73 0.00 1.03 1.15 15.62 4.05 22.14 0.51 0.24 0.00 75 Ix Intron 0 5.15 37.89 29.06 60.32 17.33 15.11 18.81 30.65 9.38 13.42 0.53 2.46 1.89 2.00 0.77 5.12 6.04 32.59 13.88 36.05 1.23 0.68 0.84 76 Ix_SR1 SilentIntronRegion 0 5.15 37.90 29.07 60.34 17.33 15.11 18.81 30.66 9.38 13.43 0.53 2.46 1.89 2.01 0.77 5.12 6.04 32.60 13.89 36.05 1.23 0.68 0.84 77 E12_Aa NovelBoundary 0 0.00 97.22 62.27 172.24 146.77 69.68 222.58 100.47 37.33 62.72 11.00 6.30 0.00 22.01 22.87 40.50 60.59 73.17 29.93 200.44 0.00 2.51 24.16 78 ER12a ExonRegion 0 1.36 6.80 9.59 32.00 6.31 16.11 17.73 13.61 3.74 4.95 0.21 0.76 0.41 0.14 0.22 1.92 2.48 5.52 2.73 10.05 1.18 0.45 0.00