Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AL583842.7 Gene 0 4.46 24.18 55.98 73.62 31.53 42.53 64.81 37.36 16.77 52.07 1.80 15.45 5.80 8.13 0.67 7.95 7.96 52.33 18.45 62.34 1.33 1.67 1.38 2 400755 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 446205 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 412092 Transcript 0 3.42 26.54 30.52 98.85 22.98 20.26 55.42 35.10 6.55 20.38 0.00 1.54 3.33 0.54 0.22 2.88 2.88 42.26 14.43 65.21 0.77 0.45 1.90 5 413650 Transcript 0 1.23 4.85 4.44 4.19 2.25 3.35 8.33 3.94 1.13 4.93 0.00 2.74 0.00 1.11 0.00 3.20 2.55 4.21 0.62 8.86 0.00 0.00 0.00 6 426408 Transcript 0 4.37 23.47 122.01 65.44 59.33 72.50 129.46 78.00 18.31 136.65 5.28 44.74 15.45 3.78 1.27 20.81 0.38 61.61 12.33 41.75 0.00 1.71 3.14 7 411746 Transcript 0 0.57 0.00 0.04 0.08 0.27 0.48 1.17 0.00 0.08 0.04 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.69 0.97 0.02 0.00 0.00 0.00 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.28 0.00 1.39 0.00 0.00 0.00 10 E1_Ad KnownBoundary 0 0.00 0.00 3.13 4.76 0.00 0.00 0.00 2.09 0.00 5.99 2.42 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 9.27 0.00 0.00 0.00 11 ER1c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 4.75 0.00 0.00 0.00 12 ER1d ExonRegion 0 0.00 0.00 0.33 0.57 7.80 6.80 1.08 0.36 0.00 0.41 0.00 0.09 0.00 2.84 0.00 0.00 0.00 1.85 0.00 8.51 0.00 0.00 0.00 13 E1_Da NovelBoundary 0 66.09 148.79 85.95 104.95 162.39 343.95 295.89 55.74 25.87 100.38 5.21 0.00 0.00 12.24 4.45 45.03 31.88 205.28 116.14 178.07 18.10 23.57 25.61 14 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 5.45 4.06 4.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.15 0.00 6.14 0.00 0.00 0.00 16 E1a_E4a KnownJunction 0 3.78 0.00 3.93 4.89 7.89 15.67 0.00 1.56 0.00 1.29 0.00 0.00 0.00 0.00 0.00 0.00 4.21 1.53 0.00 3.26 0.00 0.00 0.00 17 I1_AR1 ActiveIntronRegion 0 4.42 13.60 8.65 9.46 16.78 23.45 21.42 4.18 0.77 10.06 0.00 0.00 0.00 1.06 0.00 3.87 0.35 20.37 7.21 17.18 0.92 0.00 1.23 18 E2_Aa NovelBoundary 0 0.00 9.34 17.62 27.70 8.06 26.58 3.97 20.99 16.52 38.73 2.47 0.00 0.00 2.47 0.00 0.00 4.77 52.07 23.44 26.65 0.00 2.51 0.00 19 ER2a ExonRegion 0 5.09 18.52 56.04 61.13 20.15 36.34 27.69 34.61 31.59 44.73 1.34 7.06 0.19 22.27 0.95 7.09 25.47 71.16 32.35 86.22 4.24 2.77 0.57 20 E2_Ab KnownBoundary 0 17.26 72.36 91.22 121.36 43.80 82.96 78.87 58.41 46.79 125.90 5.16 23.56 13.15 52.74 0.00 31.10 62.83 106.74 133.37 169.32 6.05 9.12 3.50 21 ER2b ExonRegion 0 7.14 35.75 60.67 113.42 34.76 63.76 46.41 34.74 40.91 63.81 0.20 13.21 1.78 18.09 0.54 7.46 14.63 101.00 36.88 100.20 1.40 2.97 2.29 22 E2_Da NovelBoundary 0 10.82 9.93 15.11 39.49 3.23 8.57 25.75 14.66 3.21 10.66 0.00 0.00 0.00 0.00 0.00 0.00 4.30 14.09 16.38 23.14 0.00 2.76 0.00 23 E2a_E4a KnownJunction 0 11.85 119.72 68.48 152.79 36.76 172.17 65.14 56.81 53.73 74.84 0.00 12.30 7.95 29.08 0.00 22.47 20.20 108.07 64.10 152.63 8.46 2.76 0.00 24 E3_Aa NovelBoundary 0 11.04 41.64 32.02 63.00 11.04 5.17 61.92 14.01 4.22 27.18 0.00 6.30 7.30 7.12 4.45 12.05 16.83 23.34 13.46 17.26 0.00 0.00 3.16 25 ER3a ExonRegion 0 3.68 11.97 7.41 9.28 3.10 4.61 20.93 3.18 1.59 11.85 0.00 8.22 0.00 0.44 0.00 5.23 2.89 2.31 1.85 11.99 0.00 0.00 0.00 26 E3_Da NovelBoundary 0 3.63 20.06 20.31 55.87 25.81 8.23 31.49 17.42 8.91 16.55 0.00 42.76 13.31 0.00 0.00 4.36 0.00 12.97 12.89 29.34 0.00 0.00 0.00 27 E3a_E4a KnownJunction 0 0.00 2.57 5.91 3.30 3.65 0.00 0.00 4.60 1.79 2.95 0.00 0.00 0.00 2.88 0.00 4.36 4.77 6.18 0.00 8.44 0.00 0.00 0.00 28 I3 Intron 0 1.49 9.76 12.25 29.35 5.99 5.27 29.19 8.89 1.29 9.61 0.00 5.57 1.73 0.94 0.26 1.52 2.74 8.69 6.53 20.40 0.42 0.40 0.19 29 I3_SR1 SilentIntronRegion 0 1.49 9.78 12.28 29.42 6.00 5.29 29.27 8.91 1.30 9.64 0.00 5.58 1.73 0.94 0.26 1.52 2.75 8.71 6.55 20.45 0.42 0.40 0.19 30 E4_Aa NovelBoundary 0 0.00 5.59 17.18 85.10 8.57 30.89 16.12 27.56 2.92 18.45 2.63 0.00 0.00 0.00 0.00 0.00 7.76 19.57 0.00 11.51 0.00 0.00 0.00 31 ER4a ExonRegion 0 1.47 52.74 74.15 91.73 22.49 65.36 46.90 56.22 29.91 84.95 0.00 9.10 0.00 15.20 0.00 18.19 13.15 83.05 38.39 113.34 4.48 4.66 1.14 32 E4_Da KnownBoundary 0 3.78 5.99 12.68 20.54 10.61 2.90 34.31 0.00 2.98 5.78 0.00 0.00 0.00 0.00 0.00 3.93 0.00 14.92 4.61 14.51 2.72 0.00 0.00 33 E4a_E5a KnownJunction 0 0.00 9.41 67.12 35.83 14.77 16.35 28.40 62.10 17.30 95.52 0.00 12.30 0.00 0.00 0.00 15.04 0.00 51.28 11.58 21.54 0.00 0.00 3.84 34 E4a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER4b ExonRegion 0 3.42 26.54 30.52 98.85 22.98 20.26 55.42 35.10 6.55 20.38 0.00 1.54 3.33 0.54 0.22 2.88 2.88 42.26 14.43 65.21 0.77 0.45 1.90 36 E4_Db NovelBoundary 0 10.52 147.54 38.56 269.16 31.92 33.73 142.60 55.98 19.65 64.74 4.53 18.01 0.00 2.41 0.00 12.65 37.59 134.27 44.80 192.45 6.05 2.63 4.01 37 Ix Intron 0 1.53 6.85 4.83 38.10 12.22 15.41 31.20 6.81 2.21 8.63 0.00 0.00 0.00 0.00 0.00 0.00 0.79 7.75 6.15 22.01 0.00 0.00 0.71 38 Ix_SR1 SilentIntronRegion 0 1.53 6.85 4.83 38.10 12.22 15.41 31.20 6.81 2.21 8.63 0.00 0.00 0.00 0.00 0.00 0.00 0.79 7.75 6.15 22.01 0.00 0.00 0.71 39 Ix Intron 0 2.91 29.29 26.39 68.55 17.28 18.67 25.98 17.56 12.76 20.27 0.35 0.48 0.44 1.11 0.32 1.48 3.28 45.83 12.94 34.69 1.00 0.66 0.60 40 Ix_AR1 ActiveIntronRegion 0 1.97 6.93 4.53 31.66 12.71 4.73 27.92 1.60 3.42 14.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.09 2.96 20.00 0.00 0.00 0.00 41 Ix_SR1 SilentIntronRegion 0 3.18 35.57 32.52 78.93 18.57 22.59 25.45 22.04 15.38 21.94 0.45 0.62 0.56 1.42 0.41 1.89 4.20 57.55 15.75 38.82 1.27 0.84 0.76 42 Ix_AR1 ActiveIntronRegion 0 0.99 0.95 0.00 5.07 0.42 4.58 5.75 0.40 1.67 6.60 0.00 0.00 1.20 0.88 0.00 0.00 2.06 21.42 2.98 12.78 0.00 0.32 0.00 43 E5_Aa NovelBoundary 0 0.00 2.83 8.34 46.78 24.11 19.19 107.09 5.96 2.46 10.10 0.00 0.00 0.00 0.00 0.00 10.00 0.00 12.06 3.76 24.03 0.00 0.00 0.00 44 ER5a ExonRegion 0 8.74 37.53 176.89 95.05 103.88 128.64 230.53 93.90 19.32 177.78 10.55 77.17 30.91 7.56 2.54 26.58 0.76 71.94 13.09 61.96 0.00 3.42 2.43 45 E5_Da NovelBoundary 0 6.30 66.57 266.05 119.37 125.72 52.47 234.95 108.15 40.71 156.74 2.37 24.76 0.00 0.00 0.00 27.00 0.00 108.86 9.32 74.91 0.00 2.76 3.76 46 ER6a ExonRegion 0 0.14 0.00 0.17 0.31 1.09 1.94 4.62 0.00 0.31 0.16 0.00 0.05 0.00 0.00 0.00 0.00 0.00 2.73 2.61 0.10 0.00 0.00 0.00 47 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 ER7a ExonRegion 0 2.12 0.00 0.00 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 1.27 0.00 0.00 0.00 0.00