Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-403I13.7 Gene 0 41.45 0.75 1.47 8.49 14.90 38.46 6.31 23.61 29.01 27.44 33.58 19.17 33.62 47.86 34.66 62.73 41.63 0.60 0.00 0.00 23.90 7.03 16.78 2 424684 Transcript 0 0.00 0.00 0.00 0.00 3.57 2.56 0.00 2.14 4.77 1.67 2.21 6.30 13.64 7.95 0.00 15.89 4.21 0.00 0.00 0.00 12.23 3.12 0.00 3 452637 Transcript 0 17.07 0.29 1.20 4.11 7.82 18.82 2.71 10.29 14.04 14.17 17.92 14.02 19.62 21.42 12.87 37.59 21.72 0.43 0.00 0.00 13.53 4.83 8.54 4 IG40 Intergenic 0 19.19 0.47 1.14 5.26 9.21 10.43 3.07 8.60 12.09 9.44 7.29 6.31 8.27 8.82 8.63 14.78 9.43 0.00 0.00 0.05 3.76 1.33 3.22 5 IG40_SR1 SilentIntergenicRegion 0 20.88 0.00 0.00 2.75 4.47 10.59 5.12 4.62 9.94 5.82 11.40 23.34 15.83 15.86 8.50 14.88 22.44 0.00 0.00 0.00 10.30 0.39 8.97 6 IG40_SR2 SilentIntergenicRegion 0 34.06 1.58 0.00 4.24 14.71 15.90 3.16 22.94 17.39 17.24 10.21 10.94 17.61 18.77 16.96 39.48 15.12 0.00 0.00 0.00 5.28 3.66 1.14 7 IG40_AR2 ActiveIntergenicRegion 0 22.33 0.94 0.81 4.30 8.39 9.69 2.65 8.05 17.56 9.73 8.31 9.55 17.92 12.32 11.88 21.27 10.17 0.00 0.00 0.00 3.45 1.62 4.07 8 IG40_SR3 SilentIntergenicRegion 0 11.00 1.21 0.58 3.09 5.04 5.76 3.23 2.93 10.71 6.61 2.70 2.11 0.00 3.30 2.29 7.53 8.71 0.00 0.00 0.00 4.07 0.00 0.10 9 IG40_AR3 ActiveIntergenicRegion 0 19.57 0.00 2.21 5.00 12.28 12.80 4.32 7.95 11.95 8.05 7.31 9.36 11.08 10.83 8.27 19.38 14.40 0.00 0.00 0.00 3.58 0.94 5.63 10 IG40_SR4 SilentIntergenicRegion 0 18.59 0.78 2.93 8.39 12.20 5.37 2.97 11.32 14.16 15.07 8.43 2.55 6.62 8.78 9.74 16.02 8.73 0.00 0.00 0.00 8.50 1.06 2.04 11 IG40_AR4 ActiveIntergenicRegion 0 24.57 0.34 1.11 6.67 10.96 13.67 3.82 9.13 13.09 10.19 7.95 4.89 5.49 7.41 8.99 13.10 8.84 0.00 0.00 0.14 3.39 1.37 2.96 12 ER1a ExonRegion 0 61.28 1.22 2.20 11.45 21.63 39.07 8.54 28.12 29.35 30.76 38.12 19.12 24.23 51.10 38.54 59.03 45.30 0.00 0.00 0.00 30.03 8.22 18.30 13 E1_Da NovelBoundary 0 61.27 3.35 2.54 16.78 25.64 57.35 8.52 29.57 17.04 32.31 33.06 5.55 24.67 54.39 49.57 40.42 18.70 1.91 0.00 0.00 14.39 3.06 19.80 14 E1a_E2a KnownJunction 0 0.00 0.00 0.00 1.90 0.00 5.56 0.00 0.00 0.00 2.58 0.00 0.00 0.00 2.47 0.00 7.35 4.68 0.00 0.00 0.00 2.66 0.00 0.00 15 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 3.57 2.56 0.00 2.14 4.77 1.67 2.21 6.30 13.64 7.95 0.00 15.89 4.21 0.00 0.00 0.00 12.23 3.12 0.00 16 I1 Intron 0 62.03 1.16 2.41 13.14 32.49 42.10 10.46 34.96 28.98 27.00 22.35 31.44 35.81 31.24 34.39 46.79 34.96 0.26 0.00 0.24 16.01 3.70 14.29 17 I1_AR1 ActiveIntronRegion 0 28.46 1.34 0.80 10.70 37.08 36.44 7.73 16.98 21.02 17.48 16.04 11.02 16.93 31.58 30.98 33.55 18.90 0.00 0.00 0.47 12.09 1.82 15.35 18 I1_SR1 SilentIntronRegion 0 75.99 1.40 2.81 12.21 25.77 40.59 12.10 35.29 27.71 29.15 24.00 30.11 35.88 30.49 31.62 49.14 37.16 0.45 0.00 0.21 15.70 3.58 12.93 19 I1_AR2 ActiveIntronRegion 0 72.99 0.00 3.90 22.79 54.15 62.87 9.75 69.54 51.39 37.98 29.36 77.04 72.29 36.01 54.59 65.93 58.53 0.00 0.00 0.00 26.23 7.92 19.25 20 I1_AR3 ActiveIntronRegion 0 0.00 0.00 0.67 0.12 8.27 2.33 0.72 9.11 5.17 5.84 1.41 9.05 19.19 9.60 11.08 4.86 7.50 0.00 0.00 0.00 0.00 0.95 0.80 21 E2_Aa NovelBoundary 1 55.64 0.00 1.69 14.02 15.11 36.46 6.01 67.77 44.82 35.83 33.01 32.71 86.20 34.08 54.14 101.94 53.30 0.00 0.00 0.00 45.59 14.33 19.12 22 ER2a ExonRegion 0 40.14 1.17 1.14 8.65 20.47 35.19 9.77 23.50 24.94 24.70 36.62 41.30 53.75 36.61 18.29 73.00 46.29 0.00 0.00 0.00 19.68 10.77 19.10 23 E2_Da NovelBoundary 0 24.37 0.00 0.00 8.92 20.20 24.36 0.00 47.40 42.22 45.13 27.01 31.96 20.45 29.55 56.25 81.35 53.20 0.00 0.00 0.00 10.87 5.20 28.94 24 E2a_E3a KnownJunction 0 16.37 0.00 3.67 2.06 4.33 9.88 0.00 6.00 10.68 16.09 9.90 7.65 7.30 4.94 6.06 24.35 14.31 0.00 0.00 0.00 14.39 6.25 3.67 25 I2_SR1 SilentIntronRegion 0 0.00 0.00 0.00 0.00 0.00 4.98 0.00 0.00 0.00 0.00 1.76 3.25 10.55 9.77 5.60 5.41 6.01 0.00 0.00 0.00 4.01 0.00 2.67 26 E3_Aa NovelBoundary 1 20.89 0.00 3.58 3.93 8.15 50.82 11.57 12.49 39.21 25.01 20.11 0.00 6.82 18.13 4.94 56.05 8.79 0.00 0.00 0.00 14.46 12.37 0.00 27 ER3a ExonRegion 0 36.79 0.47 1.65 7.78 9.93 47.26 5.46 25.57 35.28 33.10 32.12 17.44 45.90 52.35 41.25 72.96 47.41 0.89 0.00 0.00 22.42 6.95 17.31 28 E3_Da KnownBoundary 0 15.48 0.00 0.00 11.89 3.99 42.25 0.00 21.03 45.83 13.16 35.17 5.85 20.94 51.68 36.84 71.35 34.22 2.53 0.00 0.00 14.21 2.51 14.26 29 ER3b ExonRegion 0 11.76 0.00 0.00 3.83 6.47 24.65 1.08 11.65 20.56 13.33 25.16 7.14 17.44 41.64 27.13 45.67 21.62 1.71 0.00 0.00 17.38 2.31 11.37 30 IG41 Intergenic 0 3.01 0.00 0.00 5.36 2.72 6.71 1.35 5.23 8.60 10.43 10.23 1.76 3.14 18.14 9.87 10.87 10.06 0.00 0.00 0.00 5.37 1.69 4.18 31 IG41_AR1 ActiveIntergenicRegion 0 3.02 0.00 0.00 5.39 2.73 6.73 1.35 5.25 8.64 10.47 10.27 1.77 3.15 18.22 9.91 10.91 10.10 0.00 0.00 0.00 5.39 1.70 4.19