Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GDAP2 Gene 0 17.59 14.97 13.73 19.19 23.28 26.11 26.87 23.71 25.55 40.60 37.26 59.99 56.48 34.17 25.14 31.14 37.42 13.13 20.78 28.52 17.69 22.88 24.80 2 369443 Transcript 0 49.53 38.99 16.15 25.24 37.51 38.03 36.78 25.81 28.17 45.15 33.40 81.53 61.36 54.30 30.51 50.88 51.67 17.80 42.13 35.16 26.99 34.26 31.99 3 369442 Transcript 0 6.71 1.89 6.10 7.25 7.36 10.42 9.50 8.63 5.74 5.73 10.59 31.03 26.21 10.59 7.33 9.48 7.56 4.39 4.23 7.80 3.88 9.59 4.19 4 494224 Transcript 0 2.50 1.04 0.78 0.00 0.57 3.54 0.28 0.00 3.52 1.13 2.70 2.55 3.37 1.20 0.87 1.26 0.00 1.34 4.18 0.87 1.49 1.32 3.45 5 493555 Transcript 0 0.99 3.45 1.29 0.99 5.80 2.15 7.27 1.79 1.30 1.94 2.89 19.63 7.61 3.61 0.48 2.42 3.00 1.28 2.25 2.77 3.11 2.45 4.32 6 464026 Transcript 0 2.08 0.89 1.12 5.03 3.50 1.60 5.18 3.15 2.42 3.91 3.21 10.71 11.91 1.39 0.89 0.14 1.55 0.80 1.11 2.43 0.54 2.57 0.43 7 491626 Transcript 0 20.30 3.35 3.46 6.48 1.99 2.67 7.46 2.03 0.00 3.29 12.16 0.00 3.41 7.62 6.86 7.31 4.25 3.65 6.49 1.34 2.93 7.13 7.90 8 ER1a ExonRegion 0 12.96 9.83 0.54 1.45 9.14 14.59 21.74 1.69 6.02 7.19 16.35 0.00 3.71 30.79 11.24 15.98 18.98 11.51 2.92 7.40 16.90 5.04 15.72 9 E1_Ab KnownBoundary 0 43.04 29.21 0.00 3.30 29.12 35.15 46.33 1.52 9.92 13.30 31.48 5.25 12.17 65.69 29.30 38.62 42.17 19.61 8.94 15.92 33.11 14.70 30.47 10 E1_Ac KnownBoundary 0 3.04 12.83 3.05 3.43 23.77 27.77 19.92 9.57 9.61 12.49 20.37 0.00 0.00 21.43 17.80 29.14 21.79 12.48 4.80 5.43 36.88 12.37 36.11 11 ER1b ExonRegion 1 24.66 24.49 1.81 3.79 20.13 40.58 34.02 6.91 12.24 14.36 35.13 0.00 0.82 46.82 25.86 45.36 39.04 21.05 10.25 14.25 45.80 18.75 47.37 12 ER1c ExonRegion 0 3.29 3.72 2.93 3.37 2.96 12.48 8.10 3.24 9.37 12.28 14.63 4.45 8.71 13.25 8.83 12.21 16.98 8.96 5.35 10.51 18.48 4.78 16.47 13 E1a_E2a KnownJunction 0 3.78 0.00 1.48 2.93 0.00 2.90 3.93 5.42 8.77 19.85 43.12 31.51 33.93 16.01 8.90 7.09 30.95 5.51 0.00 11.57 43.92 5.88 11.01 14 ER2a ExonRegion 0 8.29 14.05 7.93 14.40 16.45 33.10 29.60 28.42 26.07 50.15 61.97 30.98 33.37 45.74 22.20 28.47 57.51 24.14 20.40 48.12 26.27 18.04 29.06 15 E2_Da NovelBoundary 0 0.00 3.35 0.00 0.00 4.33 0.00 18.15 10.56 1.16 8.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 2.33 4.27 16 E2a_E3a KnownJunction 0 17.04 26.77 20.28 23.14 28.52 19.36 17.40 36.72 46.09 72.98 77.86 110.74 130.19 84.11 47.10 59.47 108.46 27.36 35.95 47.55 33.79 49.97 43.02 17 ER2b ExonRegion 0 7.37 24.32 15.83 23.99 28.15 20.76 18.32 30.77 41.30 77.71 76.31 90.40 100.93 69.45 31.80 49.81 94.80 24.24 37.21 53.62 25.39 39.34 42.64 18 ER3a ExonRegion 0 17.79 13.57 17.40 24.79 21.81 34.72 23.22 34.49 47.31 73.84 92.71 111.89 61.07 71.93 31.50 46.32 79.15 34.12 50.49 50.61 35.13 35.35 47.53 19 E3a_E4a KnownJunction 0 6.37 2.83 0.00 0.00 0.00 8.69 0.00 0.00 2.89 0.00 2.68 6.30 6.82 2.47 0.00 0.00 0.00 0.00 0.00 0.00 2.72 0.00 0.00 20 E3a_E5a KnownJunction 0 6.45 20.06 26.91 39.49 12.22 53.95 35.77 42.88 37.59 65.06 64.75 62.12 34.09 83.29 31.03 45.29 73.31 43.40 33.79 20.52 33.55 30.80 54.21 21 ER4a ExonRegion 0 1.14 0.31 0.92 0.00 1.71 1.93 0.84 0.00 2.79 1.84 2.95 1.35 3.28 1.14 2.61 3.79 0.00 2.12 1.15 2.61 1.76 1.02 2.75 22 E4a_E5a KnownJunction 0 0.00 0.00 1.42 0.00 0.00 0.00 0.00 0.00 4.86 1.56 2.47 0.00 0.00 0.00 0.00 0.00 0.00 1.91 11.39 0.00 0.00 2.94 7.60 23 ER5a ExonRegion 0 21.10 31.60 23.32 27.14 35.72 34.06 49.14 36.20 41.71 67.93 75.26 142.00 112.04 77.77 35.81 59.13 82.35 28.53 53.22 53.18 41.77 43.59 56.90 24 E5a_E6a KnownJunction 0 15.71 30.13 30.13 33.00 30.39 43.55 46.24 40.54 39.55 60.92 66.60 103.83 69.31 75.70 22.62 26.66 66.29 23.67 43.77 60.79 30.27 25.90 51.47 25 ER6a ExonRegion 0 13.70 22.78 26.42 32.60 54.81 60.99 48.94 35.40 41.30 63.29 83.77 118.70 93.59 78.58 41.60 69.29 73.47 28.82 36.51 48.86 28.92 35.72 58.83 26 E6a_E7a KnownJunction 1 16.60 15.72 33.82 31.46 70.71 89.10 73.22 34.13 47.31 83.86 68.54 214.57 185.86 82.94 64.28 69.30 71.62 21.76 36.33 79.39 26.13 38.03 56.77 27 ER7a ExonRegion 0 30.37 18.80 23.85 35.26 31.97 60.28 52.65 36.05 44.14 85.26 80.58 163.17 125.35 71.78 33.19 73.38 79.22 25.89 60.85 60.71 23.55 37.99 56.25 28 E7a_E8a KnownJunction 1 34.38 25.00 25.99 49.01 38.29 53.15 66.46 50.73 54.74 91.68 86.18 168.96 109.25 88.23 21.51 63.06 105.19 20.77 35.77 70.37 27.12 27.31 63.51 29 ER8a ExonRegion 0 21.80 25.64 32.18 33.99 45.15 48.61 58.89 37.61 45.03 70.41 69.67 116.65 93.53 73.16 38.95 73.65 74.18 23.28 30.43 50.18 25.81 33.24 48.81 30 E8_Ab KnownBoundary 0 38.53 20.39 29.33 15.72 41.60 58.38 58.69 35.69 46.50 68.95 49.28 133.54 68.99 80.70 60.57 60.24 50.58 13.22 55.15 54.07 40.53 19.96 37.56 31 ER8b ExonRegion 0 35.81 32.37 22.58 32.32 50.22 49.84 50.35 32.86 40.07 56.81 75.07 94.00 70.29 59.85 33.58 50.69 72.30 12.12 47.87 60.91 41.36 27.63 43.81 32 E8a_E9a KnownJunction 0 21.41 45.26 30.07 42.59 66.38 35.55 79.01 39.27 39.79 58.16 94.29 137.14 116.71 51.27 24.11 41.87 74.71 11.36 57.60 33.11 50.23 69.87 63.25 33 ER9a ExonRegion 0 17.36 26.22 22.84 30.98 49.56 46.02 45.23 36.61 40.31 70.00 74.72 107.96 92.90 78.07 40.12 59.65 70.50 17.39 39.58 44.88 49.58 37.66 47.44 34 E9_Da KnownBoundary 0 0.00 2.76 0.00 1.23 3.31 0.00 8.44 0.00 0.00 1.21 4.95 31.51 13.15 3.00 0.00 4.36 3.55 7.79 0.00 3.26 5.81 0.00 11.69 35 E9a_E10a KnownJunction 0 31.34 11.58 30.57 35.36 77.59 63.66 49.51 47.81 41.96 74.46 67.75 79.23 116.39 47.74 30.53 68.36 75.92 11.90 25.04 49.86 24.34 53.27 40.04 36 ER9b ExonRegion 0 0.99 3.45 1.29 0.99 5.80 2.15 7.27 1.79 1.30 1.94 2.89 19.63 7.61 3.61 0.48 2.42 3.00 1.28 2.25 2.77 3.11 2.45 4.32 37 I9_AR10 ActiveIntronRegion 1 5.49 4.07 5.22 10.25 5.35 0.34 11.57 3.14 1.97 6.71 0.00 14.91 17.37 0.00 0.00 0.00 3.55 3.70 8.73 7.72 2.94 7.64 0.00 38 ER10a ExonRegion 0 44.90 22.47 28.10 27.26 43.83 64.05 46.97 38.31 44.96 74.71 98.12 104.94 93.58 50.39 35.92 57.11 74.03 20.37 33.75 52.63 28.54 59.03 47.76 39 E10_Ab KnownBoundary 0 96.98 41.31 30.34 24.54 26.49 83.36 45.05 48.67 51.36 79.24 97.02 134.59 75.97 63.87 59.09 48.71 56.66 32.96 38.40 50.75 15.38 51.86 60.10 40 ER10b ExonRegion 0 59.38 34.11 25.49 30.06 30.66 55.01 37.98 46.87 46.37 82.22 77.43 126.54 110.01 52.99 46.59 52.05 73.66 30.62 35.77 44.86 21.97 31.25 43.04 41 E10a_E11a KnownJunction 0 43.49 37.69 32.17 36.46 39.47 39.58 48.62 53.44 52.31 91.65 65.28 130.54 123.69 50.74 55.26 62.72 101.82 25.78 29.65 45.13 27.31 24.62 26.04 42 ER11a ExonRegion 0 44.83 32.43 30.63 30.46 42.39 46.15 37.09 52.68 51.10 89.24 91.75 111.50 135.40 78.55 69.25 75.08 73.39 25.10 37.52 39.07 24.70 60.91 48.13 43 E11a_E12a KnownJunction 0 46.23 34.93 48.17 35.43 50.51 65.19 39.70 80.22 47.60 88.99 91.18 124.84 161.84 75.11 97.66 80.41 64.61 14.09 38.78 55.61 15.51 96.20 51.56 44 ER12a ExonRegion 0 62.23 38.73 37.79 44.65 72.51 75.97 60.26 55.31 63.29 96.23 83.78 152.83 133.00 69.05 70.50 79.08 89.48 24.42 40.59 50.88 20.64 59.32 51.64 45 E12_Da KnownBoundary 0 3.26 0.00 0.00 11.89 0.00 0.00 7.07 0.00 0.00 1.21 0.00 18.91 5.84 0.00 0.00 4.36 4.21 0.00 0.00 5.11 2.53 11.45 4.10 46 E12a_E13a KnownJunction 1 44.30 36.44 39.83 55.94 98.39 54.85 56.22 54.18 66.20 109.54 81.39 225.22 153.40 68.28 153.66 105.19 85.74 45.23 80.57 51.13 30.89 70.54 71.19 47 ER12b ExonRegion 0 2.08 0.89 1.12 5.03 3.50 1.60 5.18 3.15 2.42 3.91 3.21 10.71 11.91 1.39 0.89 0.14 1.55 0.80 1.11 2.43 0.54 2.57 0.43 48 ER13a ExonRegion 1 25.63 35.50 38.34 60.41 62.17 49.21 43.45 55.50 60.72 87.48 73.42 179.32 205.00 93.93 88.99 116.94 78.56 36.08 84.50 53.77 41.39 91.07 80.62 49 E13a_E14a KnownJunction 0 28.15 35.52 39.71 64.49 58.74 50.71 55.34 58.49 55.90 58.51 65.54 141.50 155.83 99.89 104.83 95.53 86.96 19.40 99.67 66.35 46.46 60.99 51.39 50 ER14a ExonRegion 0 55.06 49.53 37.34 55.24 51.32 66.03 43.99 54.91 51.11 82.99 74.87 127.15 112.27 79.31 77.43 97.34 91.83 31.46 53.75 55.75 53.06 44.39 40.01 51 E14_Da KnownBoundary 1 7.04 5.13 9.08 10.42 0.00 5.79 10.29 14.38 2.95 6.04 10.06 87.93 13.64 16.95 10.38 22.90 4.30 4.77 4.80 0.00 14.58 8.76 7.85 52 E14a_E14b KnownJunction 0 15.48 0.00 0.00 5.96 0.00 5.34 8.44 0.00 0.00 3.28 11.42 0.00 0.00 9.89 4.82 11.36 0.00 5.14 3.48 2.68 2.72 8.08 8.02 53 E14a_E15a KnownJunction 1 122.10 97.29 37.11 55.14 86.33 80.47 56.48 49.86 45.86 86.36 62.07 194.46 134.89 114.84 61.56 115.01 107.34 31.30 110.69 61.42 51.09 78.69 54.38 54 ER14b ExonRegion 0 9.75 2.49 7.92 10.01 10.29 15.99 11.63 10.12 6.68 6.64 11.24 32.11 24.65 13.41 7.27 12.67 9.33 6.97 3.58 9.21 5.73 8.09 4.35 55 E14_Ab KnownBoundary 0 3.04 3.09 5.26 10.45 4.24 2.84 3.80 4.44 10.97 2.61 10.00 24.46 20.29 9.83 10.75 12.22 18.23 2.07 0.00 8.95 0.00 3.12 3.41 56 ER14c ExonRegion 0 16.51 5.60 7.39 12.71 3.87 10.07 12.02 15.50 7.26 6.65 24.03 47.16 27.27 16.34 14.60 15.50 19.70 4.21 12.99 12.27 4.31 18.98 12.15 57 E14_Db KnownBoundary 0 18.45 5.53 5.59 7.09 0.00 5.56 16.56 14.83 3.30 8.89 26.32 11.70 34.41 16.83 8.90 0.00 12.34 3.19 9.22 15.08 11.18 20.33 11.27 58 E14b_E15a KnownJunction 0 25.12 6.71 6.92 6.99 3.99 0.00 6.49 4.07 0.00 3.30 12.90 0.00 6.82 5.36 8.90 3.25 8.51 2.16 9.51 0.00 3.15 6.18 7.77 59 ER14d ExonRegion 0 3.68 1.30 4.29 4.49 4.43 4.84 7.36 7.14 4.80 4.83 9.94 29.95 27.77 7.78 7.38 6.29 5.79 1.81 4.87 6.39 2.02 11.09 4.02 60 E14_Dc NovelBoundary 0 0.00 0.00 0.00 5.96 11.97 0.00 6.09 5.79 0.00 2.77 7.69 29.11 33.76 2.47 0.00 3.33 8.70 0.00 3.76 6.07 3.15 8.02 7.77 61 I14 Intron 0 3.87 3.53 1.65 5.21 4.65 3.75 9.54 4.23 2.84 4.07 4.55 14.65 15.77 4.72 2.93 3.96 3.53 0.90 1.82 4.96 1.68 8.97 3.28 62 I14_AR1 ActiveIntronRegion 0 0.79 0.30 0.55 2.43 2.41 2.74 6.74 1.93 2.21 2.18 4.20 14.97 14.48 3.61 1.14 4.01 3.46 0.28 1.91 4.62 0.99 7.49 3.07 63 I14_SR1 SilentIntronRegion 0 5.32 5.04 2.17 6.52 5.69 4.22 10.85 5.30 3.15 4.95 4.72 14.53 16.39 5.25 3.76 3.94 3.57 1.18 1.78 5.12 2.00 9.67 3.38 64 E15_Aa NovelBoundary 0 59.20 29.60 11.24 27.10 30.56 32.82 24.11 30.27 16.38 18.00 17.74 44.26 56.33 20.84 9.64 24.18 0.00 2.53 0.00 15.47 12.91 21.62 19.63 65 ER15a ExonRegion 0 41.75 34.11 25.87 34.61 49.37 46.13 42.52 41.91 38.74 78.03 48.76 66.01 105.96 55.04 52.68 43.81 50.70 17.03 32.66 35.00 26.67 37.53 29.03 66 E15_Da KnownBoundary 0 26.52 17.04 6.03 16.31 16.81 19.25 55.03 35.65 39.53 62.72 43.33 78.78 47.40 19.78 34.86 21.62 30.95 5.39 4.80 37.14 22.49 33.00 15.19 67 ER15b ExonRegion 0 13.54 9.85 10.80 19.12 17.06 19.03 32.13 25.86 32.64 41.91 21.77 50.12 45.46 17.27 18.72 21.64 28.70 10.59 12.78 36.66 12.98 19.07 25.88 68 IG15 Intergenic 0 8.97 12.93 5.69 15.20 18.02 10.06 25.59 20.23 18.13 27.91 9.88 20.48 34.37 7.95 8.53 20.01 15.23 10.78 7.15 28.13 13.19 11.95 18.30 69 IG15_SR1 SilentIntergenicRegion 0 6.02 0.54 1.01 7.42 6.96 7.09 26.63 9.56 8.07 17.89 9.92 32.71 15.01 7.11 7.99 25.43 5.13 10.68 7.15 17.97 4.60 13.24 13.25 70 IG15_AR1 ActiveIntergenicRegion 0 9.39 14.54 6.31 16.24 19.48 10.48 25.60 21.66 19.48 29.30 9.93 19.08 36.95 8.09 8.65 19.45 16.56 10.85 7.19 29.55 14.33 11.85 19.03