Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NUDT17 Gene 0 12.17 10.20 19.21 18.51 10.34 11.35 7.90 13.96 12.34 15.40 10.12 9.24 8.01 19.53 38.95 26.14 21.25 20.11 10.97 15.94 9.80 5.40 9.52 2 467151 Transcript 0 6.20 5.89 12.50 10.86 5.89 6.35 5.19 8.63 8.25 9.17 5.41 4.14 3.08 11.15 20.02 12.46 7.18 14.11 6.87 13.00 4.42 2.57 5.76 3 334513 Transcript 0 4.62 3.24 3.67 5.14 2.19 4.92 2.56 3.08 2.00 4.74 0.18 4.09 1.99 14.05 15.50 13.15 2.37 3.16 2.41 2.19 3.03 1.35 1.16 4 477878 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 460879 Transcript 0 0.00 0.00 8.96 0.00 0.00 0.00 0.00 4.64 1.56 6.29 2.68 0.00 0.00 0.00 5.81 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 498192 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 444015 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 IG42 Intergenic 0 27.94 40.32 22.63 42.14 37.70 41.39 36.71 30.95 18.35 38.23 36.77 48.51 51.93 37.59 33.92 38.27 42.50 24.61 32.04 31.27 13.09 23.29 12.16 9 IG42_AR3 ActiveIntergenicRegion 0 23.28 31.52 21.89 26.38 21.41 45.83 22.49 24.47 10.11 35.87 65.70 63.03 53.34 52.04 51.43 48.95 74.27 29.42 39.82 34.02 29.73 38.52 11.69 10 IG42_AR1 ActiveIntergenicRegion 0 29.48 43.07 23.09 46.69 42.32 40.77 40.79 32.98 20.68 39.31 29.85 45.41 52.21 34.37 29.88 36.00 34.93 23.69 30.45 30.96 9.00 19.69 12.42 11 ER1a ExonRegion 0 8.19 9.74 12.50 16.46 10.67 8.70 10.27 12.05 9.62 12.76 8.48 11.41 9.20 10.90 13.71 12.15 11.79 19.16 12.41 20.11 6.21 4.88 12.07 12 E1_Ab KnownBoundary 0 3.78 3.22 4.52 1.63 0.00 2.78 0.00 8.79 1.65 9.48 0.00 0.00 0.00 2.65 4.45 0.00 4.77 17.20 0.00 5.82 0.00 0.00 7.68 13 E1_Ac KnownBoundary 0 0.00 3.03 3.49 2.06 0.00 0.00 0.00 2.18 0.00 3.22 0.00 0.00 0.00 0.00 0.00 3.50 8.79 8.37 4.14 0.00 0.00 0.00 0.00 14 E1_Ad KnownBoundary 0 27.71 8.95 10.23 15.28 8.06 10.79 6.58 10.15 9.35 5.64 9.63 0.00 0.00 23.78 50.19 31.87 17.11 20.89 3.67 14.32 25.27 3.12 0.00 15 ER1b ExonRegion 1 4.23 6.10 9.80 8.18 0.00 3.67 2.65 7.78 3.71 9.18 0.00 0.00 0.00 3.25 8.70 0.74 13.20 21.25 3.19 6.38 2.20 2.08 5.87 16 ER1c ExonRegion 0 9.44 7.98 10.23 13.47 0.00 4.87 4.43 10.10 4.23 9.00 2.23 0.00 0.00 15.43 28.12 9.83 19.93 21.39 4.29 7.69 14.58 2.08 2.48 17 ER1d ExonRegion 0 5.92 4.02 12.08 8.73 4.59 4.44 4.93 11.27 7.77 8.72 5.97 2.18 1.19 18.02 29.00 17.27 15.07 17.12 4.46 7.93 12.19 1.48 5.99 18 E1_Da KnownBoundary 0 21.19 0.00 8.25 11.79 7.98 0.00 0.00 3.57 7.47 11.12 0.00 0.00 0.00 5.47 20.40 12.73 4.77 21.10 4.42 6.33 5.75 0.00 0.00 19 E1a_E1f KnownJunction 0 3.19 0.00 0.00 3.40 0.00 0.00 0.00 1.77 3.01 1.02 9.42 0.00 0.00 21.25 27.81 24.01 22.53 6.51 0.00 3.26 10.44 8.88 0.00 20 E1a_E1h KnownJunction 0 0.00 0.00 8.96 0.00 0.00 0.00 0.00 4.64 1.56 6.29 2.68 0.00 0.00 0.00 5.81 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER1e ExonRegion 0 5.38 3.69 10.08 7.89 3.54 4.38 2.71 8.17 4.47 8.12 2.54 2.80 1.42 12.86 22.06 10.26 4.49 16.39 5.73 8.89 2.52 3.82 3.93 22 E1_Ae KnownBoundary 0 6.96 0.00 23.21 11.15 14.09 10.79 1.99 4.97 9.52 13.05 2.68 0.00 0.00 9.71 20.52 0.00 9.35 18.20 4.71 8.44 2.84 0.00 11.35 23 ER1f ExonRegion 0 7.71 0.15 12.34 10.84 5.10 6.94 1.77 3.74 5.91 10.81 1.38 0.00 0.00 16.16 17.13 13.16 8.80 19.23 1.67 16.41 1.73 3.97 6.78 24 E1_Af KnownBoundary 0 16.67 0.00 8.78 12.39 0.00 8.69 1.94 1.97 4.43 6.85 2.00 0.00 0.00 20.19 24.35 17.86 13.65 12.85 0.00 7.86 2.78 5.51 4.35 25 ER1g ExonRegion 0 7.68 2.61 16.97 10.56 9.39 2.47 1.64 6.93 9.29 14.83 2.31 2.40 3.98 22.38 46.04 55.92 25.90 15.75 9.49 20.26 7.86 7.43 6.29 26 E1_Ag KnownBoundary 0 7.04 6.45 13.78 12.12 10.10 0.00 0.00 4.68 6.77 23.99 2.47 0.00 0.00 19.37 45.00 20.85 31.98 15.75 4.42 6.52 2.66 0.00 4.10 27 ER1h ExonRegion 0 4.98 7.22 13.33 12.78 6.06 6.87 4.47 12.63 12.64 12.73 12.19 0.00 2.16 25.45 41.80 21.13 22.42 14.78 6.51 12.20 9.57 7.14 9.81 28 E1_Db KnownBoundary 0 2.96 6.31 8.22 6.66 0.00 0.00 2.12 8.21 7.12 3.17 0.00 0.00 0.00 0.00 4.45 10.60 0.00 6.34 0.00 6.20 0.00 0.00 0.00 29 E1b_E1h KnownJunction 0 6.74 2.76 7.89 1.30 4.24 5.74 2.12 1.73 5.06 2.95 2.16 0.00 0.00 12.24 15.95 21.19 22.16 1.99 0.00 12.08 5.93 2.51 0.00 30 E1_Dc KnownBoundary 0 3.26 0.00 6.24 2.06 0.00 0.00 0.00 3.66 2.86 5.72 0.00 0.00 0.00 2.47 8.90 0.00 3.93 2.20 0.00 0.00 3.15 0.00 8.28 31 E1c_E1j KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER1i ExonRegion 0 8.47 6.10 15.11 11.81 0.89 0.00 3.97 12.10 12.35 8.79 3.22 1.44 0.00 8.12 18.37 23.78 13.20 12.32 5.31 10.64 3.67 2.08 8.81 33 ER1j ExonRegion 0 5.54 2.46 13.60 13.91 6.04 5.67 2.65 11.11 8.79 10.56 6.52 2.33 1.70 9.63 21.05 14.09 12.44 14.52 5.68 13.01 4.12 1.57 3.73 34 E1_Ah KnownBoundary 0 23.78 3.35 19.04 3.60 3.99 2.16 0.00 11.01 6.83 11.60 9.42 0.00 0.00 10.83 24.48 11.62 9.35 20.23 4.14 6.14 0.00 3.12 12.46 35 E1d_E1i KnownJunction 0 0.00 0.00 2.66 4.69 0.00 0.00 1.85 0.00 0.00 5.48 0.00 0.00 0.00 20.84 13.35 16.41 0.00 2.57 0.00 2.49 4.94 0.00 0.00 36 ER1k ExonRegion 0 22.44 7.40 33.18 8.67 13.38 19.51 4.87 19.08 13.24 18.67 10.51 0.00 6.19 34.63 52.11 43.99 28.52 22.76 11.98 13.70 6.70 4.17 9.04 37 E1_De KnownBoundary 0 30.23 17.50 43.67 18.38 3.57 17.94 10.47 24.15 14.12 15.88 10.27 5.70 13.64 20.01 41.41 32.56 26.18 26.65 7.15 15.34 5.19 0.00 4.35 38 E1e_E3b KnownJunction 0 5.70 7.70 13.81 5.19 3.31 6.64 5.12 3.20 10.13 5.24 4.11 0.00 0.00 11.18 23.24 13.33 0.00 6.38 3.67 9.97 4.82 0.00 3.33 39 ER1l ExonRegion 0 23.28 12.76 34.76 11.34 9.61 25.51 6.32 20.27 14.99 12.30 10.37 1.57 11.94 19.93 43.39 32.96 22.96 22.76 11.29 12.67 5.31 2.08 5.87 40 ER1m ExonRegion 0 17.04 12.99 33.69 21.81 12.11 11.98 8.08 12.45 16.43 22.16 10.97 8.77 6.20 27.03 45.85 31.11 26.10 31.90 11.23 19.06 9.82 8.51 12.94 41 E1_Ai KnownBoundary 0 3.19 9.41 17.92 21.98 33.96 5.68 6.23 2.55 16.93 14.37 5.26 6.75 0.00 23.02 45.49 45.20 16.64 19.69 33.22 5.62 5.56 3.12 12.21 42 E1_Aj KnownBoundary 0 10.30 3.35 34.15 15.92 8.23 5.79 7.68 18.94 9.55 25.47 4.84 5.70 0.00 25.90 65.02 26.57 30.86 20.23 18.17 20.96 31.38 2.82 3.33 43 ER1n ExonRegion 0 9.28 6.10 37.61 27.68 26.96 7.48 8.66 15.69 20.33 33.00 8.48 7.66 1.44 50.47 104.45 67.67 36.82 31.70 29.89 19.48 32.55 4.17 11.97 44 ER1o ExonRegion 0 7.74 9.32 36.31 22.53 9.69 20.10 5.15 20.76 21.22 27.90 20.75 5.70 14.60 37.70 87.22 64.52 45.75 29.77 18.91 25.40 30.96 9.39 18.59 45 E1_Df NovelBoundary 0 3.04 6.31 11.80 11.99 4.33 4.43 0.00 20.99 9.64 16.47 0.00 0.00 19.80 7.18 4.70 15.98 13.46 25.58 0.00 10.29 5.56 5.39 11.18 46 E1f_E2a KnownJunction 0 3.78 14.41 22.00 27.20 16.13 21.64 4.50 17.33 23.81 20.82 24.69 5.55 20.45 36.32 102.60 44.86 34.69 23.26 14.12 17.51 8.71 8.39 13.06 47 I1 Intron 0 2.08 2.00 8.27 3.60 5.27 2.89 1.56 6.09 7.25 5.05 4.19 3.51 3.04 6.17 16.43 20.48 7.80 16.27 12.54 6.70 3.47 4.92 8.10 48 I1_SR1 SilentIntronRegion 0 2.10 2.02 8.33 3.62 5.31 2.91 1.58 6.13 7.30 5.09 4.21 3.54 3.07 6.21 16.56 20.63 7.86 16.40 12.64 6.76 3.50 4.96 8.16 49 E2_Aa NovelBoundary 0 6.30 6.58 15.23 18.31 15.03 0.00 6.76 10.88 10.01 6.21 4.84 12.75 11.69 7.53 17.80 35.89 4.21 9.04 7.91 15.21 11.00 0.00 4.27 50 ER2a ExonRegion 0 26.02 24.53 29.98 39.19 22.27 20.04 10.97 24.93 20.90 27.71 29.13 15.31 19.94 48.00 90.91 62.23 40.08 23.42 16.92 30.58 25.91 8.36 18.12 51 E2_Da NovelBoundary 0 3.48 0.00 12.95 13.82 4.33 2.90 1.63 6.86 3.07 3.33 2.68 0.00 13.15 0.00 0.00 11.71 0.00 6.01 0.00 5.37 3.03 0.00 0.00 52 E2a_E3a KnownJunction 0 37.64 9.47 21.97 40.05 19.78 35.55 10.55 32.74 16.38 25.20 20.43 18.01 13.64 53.39 60.45 66.91 44.79 7.09 4.14 25.06 10.44 2.69 12.12 53 E3_Aa NovelBoundary 0 3.78 5.92 13.90 7.19 13.75 2.16 2.25 12.20 5.73 1.24 2.00 0.00 6.33 2.24 10.51 4.36 8.79 7.71 3.76 3.26 0.00 2.51 8.54 54 E3_Ab NovelBoundary 0 17.04 11.31 20.82 16.41 6.88 16.30 11.53 20.25 17.48 18.45 6.21 0.00 0.00 16.95 47.72 32.81 20.20 5.47 3.76 22.18 17.05 3.12 4.18 55 ER3a ExonRegion 0 24.64 11.48 32.03 34.56 17.58 29.47 10.88 28.77 23.82 26.46 22.09 8.66 10.05 43.39 69.22 60.08 38.67 9.63 5.23 23.25 15.11 2.68 12.38 56 ER3b ExonRegion 0 21.35 21.67 26.89 29.68 6.82 14.93 14.49 17.58 19.47 22.86 18.12 16.01 22.84 36.92 100.55 63.28 37.34 20.23 6.85 20.57 18.89 10.17 11.87 57 E3_Da NovelBoundary 0 14.67 5.92 22.91 21.98 3.82 11.47 2.25 11.13 17.01 17.59 14.42 0.00 21.91 32.73 97.29 56.31 18.51 25.87 4.05 18.79 5.87 14.57 11.01 58 E3b_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 E3_Dc NovelBoundary 0 10.89 12.83 14.22 9.02 7.64 0.00 12.90 9.57 9.90 8.46 0.00 0.00 0.00 9.77 29.42 7.95 20.48 13.56 22.59 29.98 2.66 2.88 11.87 60 E3c_E4a KnownJunction 0 20.89 5.85 24.07 14.85 15.87 12.55 3.97 21.28 19.88 14.51 17.11 0.00 13.31 23.49 65.89 32.13 31.14 24.33 0.00 29.72 23.91 0.00 4.35 61 ER3c ExonRegion 0 20.11 9.41 24.81 24.36 5.35 12.61 6.12 19.66 19.14 17.63 17.64 14.61 18.76 34.92 118.23 50.15 41.67 27.72 6.37 25.53 15.98 11.72 9.91 62 ER3d ExonRegion 0 23.86 7.67 21.72 15.98 6.81 13.59 3.67 19.09 18.25 16.32 18.45 12.59 14.92 24.29 81.37 35.26 37.36 24.94 3.76 26.79 17.53 5.30 4.54 63 I3 Intron 0 22.92 11.21 20.51 18.40 8.96 10.47 7.82 10.14 7.97 9.76 9.13 7.72 3.37 12.21 22.28 22.82 17.55 9.05 5.65 15.08 2.60 6.56 12.72 64 I3_AR1 ActiveIntronRegion 0 23.10 11.30 20.67 18.54 9.03 10.55 7.88 10.22 8.04 9.84 9.20 7.78 3.39 12.30 22.45 23.00 17.69 9.12 5.69 15.20 2.62 6.62 12.82 65 E4_Aa NovelBoundary 0 6.82 20.26 27.35 5.26 8.23 5.79 5.61 13.18 2.92 4.41 17.43 6.30 0.00 0.00 14.46 11.54 4.11 6.59 4.42 2.75 5.68 4.78 12.04 66 E4_Ab NovelBoundary 0 34.01 18.02 19.81 14.65 3.23 22.43 6.01 8.71 13.63 18.27 14.00 6.30 0.00 11.60 15.33 21.36 8.23 11.07 0.00 16.04 13.10 0.00 12.04 67 ER4a ExonRegion 0 18.78 8.64 26.19 21.81 9.37 19.03 2.81 22.25 16.06 14.34 18.60 1.62 12.31 23.35 65.64 28.24 30.12 24.71 1.59 23.94 20.38 0.00 3.30 68 ER4b ExonRegion 0 33.98 20.65 52.95 46.06 25.55 21.90 18.20 24.65 29.98 34.56 23.10 10.21 17.51 49.82 108.06 75.04 59.00 45.93 23.28 22.77 28.29 8.42 12.57 69 E4b_E5a KnownJunction 0 54.31 30.92 52.42 40.65 33.45 31.86 19.78 28.01 39.26 35.35 29.11 25.66 26.46 55.27 132.89 75.88 88.83 54.59 19.77 22.56 15.75 14.33 15.37 70 ER4c ExonRegion 0 29.63 24.40 43.30 39.07 24.08 33.01 18.54 19.01 33.35 33.26 32.86 25.98 18.76 48.72 124.75 91.15 94.63 53.58 19.11 20.57 21.30 10.42 11.75 71 E5_Aa NovelBoundary 0 9.56 12.04 11.29 15.12 11.97 0.00 6.93 6.24 3.30 3.17 0.00 0.00 6.82 17.19 8.90 19.40 7.48 10.69 0.00 6.33 6.24 5.51 12.63 72 ER5a ExonRegion 0 30.50 26.01 52.18 44.62 22.78 32.39 13.43 33.88 30.00 36.54 26.52 26.91 12.47 39.46 106.80 57.81 66.69 39.92 23.88 15.38 20.59 12.98 14.91 73 E5_Da KnownBoundary 0 96.09 22.10 45.24 36.76 12.14 16.47 4.50 33.11 20.72 23.83 13.16 13.65 0.00 14.24 33.99 12.65 18.79 16.71 13.46 10.93 5.31 5.14 12.12 74 E5_Db KnownBoundary 0 34.82 6.71 13.87 9.66 12.99 5.79 6.76 11.99 14.53 5.35 2.42 7.50 13.15 19.66 57.23 16.75 4.68 1.74 4.80 7.86 6.18 3.12 12.55 75 ER5b ExonRegion 0 11.95 7.06 23.86 28.30 9.44 11.43 5.45 27.76 21.07 14.10 8.07 7.64 6.35 23.31 62.29 14.86 17.28 12.39 12.18 9.01 6.22 4.53 3.97 76 ER5c ExonRegion 0 9.25 6.48 4.68 5.58 4.39 9.84 3.27 6.16 4.01 4.01 0.35 8.19 3.98 7.26 17.64 9.90 4.73 3.75 4.82 1.89 1.11 2.70 2.32