Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PIAS3 Gene 0 60.22 30.64 38.23 38.82 32.37 72.99 22.03 43.35 46.04 45.90 61.39 24.29 32.50 47.07 43.84 57.97 81.83 53.45 61.86 26.55 184.64 131.93 144.29 2 393046 Transcript 0 12.63 0.32 3.66 0.44 0.61 5.07 3.38 4.97 4.73 5.83 6.93 3.15 4.17 10.04 8.07 7.13 23.53 8.24 16.71 4.20 82.81 23.30 40.63 3 463514 Transcript 0 0.00 0.00 0.00 0.00 0.45 1.21 0.00 0.82 0.30 0.57 0.32 0.00 0.00 0.00 0.34 0.00 0.00 0.00 0.00 0.00 1.09 0.70 0.00 4 369299 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 393045 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 369298 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 484423 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 498436 Transcript 0 13.86 12.25 11.91 18.05 7.21 35.60 9.99 14.42 14.32 17.90 10.58 5.60 12.81 10.18 10.12 9.32 14.05 14.04 17.99 18.09 69.85 12.17 26.57 9 475261 Transcript 0 24.00 10.79 11.84 17.04 11.27 33.12 10.84 21.99 24.32 19.60 10.77 7.76 21.43 18.26 17.93 22.38 23.74 20.46 30.46 11.14 79.44 39.39 61.51 10 472114 Transcript 0 31.21 9.03 15.42 24.49 18.48 20.28 8.41 19.11 15.12 11.61 13.04 7.13 12.19 9.75 11.63 20.64 24.68 17.33 25.14 10.67 34.56 29.86 37.32 11 ER1a ExonRegion 0 22.52 0.64 1.03 0.89 1.22 7.36 2.71 1.11 1.79 2.42 2.75 0.00 1.53 5.07 6.87 10.24 11.45 5.16 5.09 1.87 53.44 21.06 40.89 12 E1_Ab KnownBoundary 0 92.39 3.35 3.99 1.50 11.21 19.08 8.30 4.31 4.98 9.05 7.48 0.00 6.82 17.31 17.80 27.26 23.28 11.65 9.04 3.26 171.19 59.27 179.43 13 ER1b ExonRegion 0 19.79 0.56 2.56 0.27 2.01 5.16 2.70 7.93 5.54 7.97 8.09 5.90 3.81 8.43 4.35 12.26 16.30 7.69 8.44 1.84 97.76 40.97 74.48 14 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1a_E4a KnownJunction 0 2.74 0.00 6.30 0.00 0.00 2.78 4.06 8.83 7.67 9.24 11.11 6.30 6.82 15.01 9.27 4.02 35.62 11.32 28.33 6.52 112.19 25.53 40.38 16 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER2b ExonRegion 0 5.32 4.71 2.38 2.92 8.72 43.17 9.99 3.85 4.55 6.13 6.57 0.00 2.81 4.32 8.95 17.15 10.47 23.07 17.02 5.29 23.61 15.54 57.47 18 E2_Ac KnownBoundary 0 3.78 6.31 0.00 0.00 4.33 5.79 4.50 4.48 0.00 0.00 0.00 0.00 0.00 4.89 4.45 13.07 0.00 6.88 0.00 0.00 8.90 18.19 12.21 19 E2_Ad KnownBoundary 0 18.37 15.98 9.11 17.31 28.18 171.15 34.98 21.40 12.64 27.26 22.64 0.00 6.82 2.47 6.30 49.47 41.05 86.43 87.53 19.18 63.07 28.04 229.54 20 ER2c ExonRegion 1 13.33 10.78 7.72 10.09 19.27 123.96 25.16 12.10 10.25 19.27 17.01 0.00 9.38 8.45 21.76 43.99 33.01 52.48 57.34 12.77 63.25 39.17 166.21 21 ER2d ExonRegion 0 34.64 25.06 10.90 15.27 15.07 123.05 13.59 24.20 19.24 30.07 38.91 2.67 7.72 20.13 22.14 51.97 53.11 61.11 72.65 24.59 74.15 51.41 147.95 22 E2a_E4a KnownJunction 1 76.31 42.76 11.95 17.11 33.36 136.17 11.26 47.85 29.34 35.19 55.65 0.00 45.45 34.38 50.68 96.30 92.47 70.89 108.33 59.83 83.77 67.42 118.74 23 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 1.34 3.63 0.00 2.46 0.91 1.71 0.97 0.00 0.00 0.00 1.02 0.00 0.00 0.00 0.00 0.00 3.26 2.10 0.00 24 E3a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E4_Ab NovelBoundary 0 18.60 10.98 20.25 11.12 19.10 48.04 9.54 47.19 40.42 33.28 63.33 6.15 13.31 17.19 15.70 51.95 74.99 77.10 67.39 25.50 142.15 45.25 48.23 26 ER4a ExonRegion 1 45.96 24.98 17.04 12.33 23.95 94.31 11.29 44.45 37.41 38.45 68.85 8.66 35.73 40.91 30.12 84.07 126.38 77.08 116.95 51.57 197.81 72.53 114.95 27 ER4b ExonRegion 0 12.23 9.81 27.65 20.40 13.58 37.79 8.85 52.39 49.48 70.19 101.65 45.35 55.31 55.61 43.94 80.97 132.66 93.78 85.99 44.34 305.61 154.38 225.28 28 E4_Da KnownBoundary 0 2.82 8.88 28.86 14.45 22.75 99.03 19.30 31.54 46.04 53.46 67.65 31.21 25.97 29.67 16.32 70.15 75.27 65.99 40.19 19.75 219.31 61.36 100.81 29 E4a_E4d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E4_Db KnownBoundary 1 15.11 3.35 7.27 4.13 21.56 93.81 31.40 7.43 19.44 22.75 85.65 6.30 56.00 4.94 6.18 39.22 66.48 19.11 47.53 13.04 162.72 99.50 90.23 31 E4_Ac KnownBoundary 0 13.93 21.97 22.35 17.21 6.88 66.89 31.31 17.25 38.57 52.33 49.22 6.30 35.06 39.38 30.41 32.47 57.78 52.40 39.53 34.52 196.33 82.05 90.66 32 ER4c ExonRegion 1 11.29 13.90 36.97 22.03 25.64 123.63 38.84 27.37 62.06 77.22 129.18 29.95 84.81 56.03 41.34 84.46 128.18 97.16 59.73 37.77 347.82 145.15 170.08 33 ER4d ExonRegion 1 13.83 15.86 33.25 27.98 20.16 127.63 43.69 30.54 63.24 77.00 122.16 19.05 80.98 59.98 50.48 70.54 119.71 100.39 55.00 33.19 326.00 140.98 147.81 34 ER4e ExonRegion 0 46.24 32.72 27.25 20.32 21.07 139.07 30.08 40.67 61.08 60.51 116.41 57.21 45.95 60.52 48.59 61.44 121.97 95.31 61.69 33.37 370.45 161.91 166.98 35 E4_Ad KnownBoundary 0 38.75 73.47 38.23 26.77 15.20 79.10 25.13 48.63 55.93 51.87 95.18 30.16 60.22 70.69 40.18 74.68 138.76 84.44 70.87 41.61 326.93 167.29 182.34 36 ER4f ExonRegion 0 55.27 36.06 43.59 34.30 20.38 66.30 16.63 54.22 71.16 83.31 104.60 58.45 104.32 98.36 60.41 128.30 124.12 101.82 103.03 49.54 325.87 247.64 241.71 37 E4_Dc KnownBoundary 0 57.57 2.70 12.57 17.38 0.00 25.95 4.46 21.28 29.75 30.84 25.16 18.01 18.83 12.13 4.45 35.12 28.70 23.21 17.98 17.19 118.98 65.40 80.33 38 E4c_E4e KnownJunction 0 6.96 6.05 41.87 31.40 15.37 61.10 9.80 33.60 54.02 70.35 62.07 6.60 39.77 65.10 53.28 109.63 99.49 86.76 99.01 29.02 263.05 208.32 182.68 39 ER4g ExonRegion 0 23.00 6.16 12.66 11.82 8.07 34.55 4.79 23.86 30.37 22.86 29.54 19.62 12.84 16.18 15.57 20.24 26.72 13.31 21.90 14.71 103.27 48.79 71.70 40 E4_Dd KnownBoundary 0 24.23 11.25 8.28 4.96 8.66 17.94 4.33 34.17 11.43 19.37 19.43 25.06 16.56 15.25 40.79 16.58 22.07 16.71 17.98 15.66 83.77 73.05 71.62 41 E4_Ae KnownBoundary 1 14.60 3.35 16.50 14.98 11.97 30.49 6.14 36.19 39.50 30.78 19.95 0.00 39.61 18.13 10.75 42.64 19.82 24.54 8.47 8.76 72.90 78.50 99.28 42 ER4h ExonRegion 0 23.48 7.75 17.04 15.12 10.70 33.10 6.81 50.70 37.99 38.18 28.44 12.78 39.75 22.12 29.98 44.58 28.45 28.77 21.99 17.83 115.85 108.84 125.86 43 ER4i ExonRegion 0 35.88 18.35 48.23 40.16 21.92 85.12 18.85 93.36 82.03 87.60 143.45 33.97 68.84 96.79 55.05 134.70 158.88 96.13 107.96 35.64 368.15 257.04 317.75 44 E4e_E5a KnownJunction 0 32.01 16.12 40.18 49.98 37.18 46.85 27.12 83.75 71.04 77.82 141.09 50.12 55.52 102.36 57.73 129.37 178.68 95.34 123.20 29.72 351.08 199.80 288.19 45 E5_Aa NovelBoundary 0 0.00 16.31 1.83 3.76 3.74 4.32 1.72 0.00 1.16 3.06 0.00 0.00 0.00 0.00 0.00 0.00 3.65 1.70 8.38 0.00 8.34 0.00 0.00 46 ER5a ExonRegion 1 34.45 24.40 51.06 39.42 30.95 89.57 23.08 79.71 77.62 84.42 121.81 51.10 51.59 85.98 33.62 113.76 140.13 100.25 121.92 35.71 338.12 270.33 236.03 47 E5a_E6a KnownJunction 0 43.49 25.13 69.57 38.42 43.72 95.23 31.97 88.23 85.59 85.85 108.29 32.86 60.71 86.70 44.26 84.00 121.55 88.92 100.71 41.93 342.74 286.14 185.84 48 ER6a ExonRegion 0 50.12 36.43 50.94 31.55 38.60 122.59 36.96 78.30 78.97 81.45 133.21 50.94 99.69 103.60 66.42 149.93 139.41 104.22 159.34 44.32 429.21 334.56 294.85 49 E6_Da KnownBoundary 0 41.49 47.82 34.53 27.20 24.87 83.36 22.92 92.70 67.97 70.81 114.19 50.42 47.24 79.05 27.20 105.10 119.59 107.03 102.21 55.67 342.62 168.88 228.60 50 ER6b ExonRegion 0 67.15 46.50 27.77 21.84 33.51 85.94 31.20 72.40 65.80 66.65 137.72 38.77 73.76 96.04 61.26 143.41 150.04 109.98 108.88 49.85 383.30 257.93 340.45 51 E6b_E7a KnownJunction 0 95.05 37.56 25.28 24.71 58.32 101.13 39.79 71.72 69.50 76.50 124.66 37.96 88.31 107.31 77.51 153.81 175.41 98.82 102.50 22.88 369.43 275.55 368.85 52 ER7a ExonRegion 0 35.54 32.03 32.39 29.91 32.53 97.26 24.96 53.77 63.08 62.31 96.69 46.34 76.05 88.92 45.50 87.23 126.29 78.26 73.48 34.66 327.10 191.00 251.96 53 E7_Da KnownBoundary 1 16.30 6.71 11.15 20.58 6.79 19.70 7.29 17.70 10.42 20.28 4.95 6.30 34.58 12.48 8.90 4.19 21.41 13.22 11.67 11.76 86.06 19.96 40.29 54 E7a_E7c KnownJunction 0 27.78 24.80 26.85 28.63 42.11 43.50 18.50 60.34 61.31 74.68 89.23 54.62 94.80 81.70 38.45 123.56 120.90 77.14 105.51 41.80 280.78 207.46 304.58 55 ER7b ExonRegion 0 13.86 12.25 11.91 18.05 7.21 35.60 9.99 14.42 14.32 17.90 10.58 5.60 12.81 10.18 10.12 9.32 14.05 14.04 17.99 18.09 69.85 12.17 26.57 56 E7_Ab KnownBoundary 0 7.19 11.97 1.18 24.57 21.39 62.92 10.07 19.96 24.10 16.01 7.79 0.00 12.99 2.12 8.90 8.03 17.67 23.67 30.31 5.82 45.16 18.19 24.50 57 ER7c ExonRegion 1 22.18 9.49 4.56 16.33 24.53 35.25 9.88 16.48 12.60 12.11 4.87 0.00 3.65 9.68 8.49 6.88 30.87 20.22 18.11 4.37 47.01 27.39 41.22 58 E7_Db KnownBoundary 0 49.34 6.71 7.04 24.97 16.13 15.73 6.40 21.69 14.15 14.72 12.27 5.70 0.00 24.66 24.11 16.58 40.77 27.98 22.59 11.44 73.33 47.33 48.66 59 ER7d ExonRegion 0 26.48 9.26 11.94 15.77 12.47 34.45 10.79 23.90 23.55 23.87 9.46 4.05 16.37 22.32 20.37 25.36 19.59 20.52 27.58 14.49 78.91 44.20 71.67 60 E7_Ac KnownBoundary 1 13.26 18.81 14.93 15.92 7.81 45.14 16.83 22.88 31.42 26.57 1.95 6.30 26.13 29.14 28.56 36.23 4.11 21.02 29.93 18.41 61.96 36.50 62.40 61 ER7e ExonRegion 0 47.25 31.32 42.96 48.83 39.12 97.49 30.72 75.79 101.99 98.84 115.05 52.04 76.20 113.41 77.64 107.11 163.50 92.88 110.64 58.12 421.96 228.69 290.92 62 E7_Dc KnownBoundary 0 17.93 6.05 9.22 6.79 8.23 19.65 1.55 7.27 18.81 12.01 11.69 7.50 13.64 14.66 20.15 24.61 12.72 15.42 33.70 11.19 89.08 25.78 29.28 63 E7c_E7d KnownJunction 0 31.56 38.74 44.56 36.06 48.98 117.43 19.52 37.21 73.55 68.58 98.87 25.06 67.04 94.94 49.20 77.24 119.78 71.76 44.42 40.97 358.00 189.46 240.89 64 ER7f ExonRegion 1 21.52 12.32 11.74 18.31 10.08 31.79 10.89 20.07 25.09 15.34 12.08 11.47 26.50 14.21 15.49 19.40 27.88 20.40 33.33 7.80 79.97 34.58 51.36 65 E7_Ad KnownBoundary 0 10.96 0.00 9.05 13.55 24.11 38.44 4.02 10.19 18.87 11.01 7.32 6.30 13.64 9.71 14.71 15.72 16.18 13.18 8.85 6.14 64.25 42.68 31.84 66 ER7g ExonRegion 0 35.40 29.36 41.90 42.12 33.06 88.32 13.20 62.53 90.55 79.32 90.00 31.02 58.59 77.29 55.76 77.93 122.04 82.62 67.42 37.54 317.91 203.13 191.97 67 E7_Dd NovelBoundary 0 2.96 5.92 7.13 7.69 12.56 15.90 1.68 11.25 4.51 0.00 7.16 5.70 0.00 5.47 27.94 7.78 3.83 4.60 9.04 9.20 17.54 2.94 4.35 68 E7d_E8a KnownJunction 0 59.49 37.89 45.65 38.86 30.39 111.30 24.60 72.45 104.22 96.43 86.71 25.06 64.77 67.93 62.67 79.47 136.33 109.60 116.43 35.47 319.45 239.48 228.00 69 ER8a ExonRegion 0 56.86 45.91 54.78 46.52 51.01 129.06 30.64 57.08 81.72 67.10 118.24 35.42 62.63 91.26 77.23 82.54 152.07 95.46 107.91 48.39 298.39 236.85 241.39 70 E8_Da NovelBoundary 0 6.89 6.51 3.58 13.58 14.77 13.51 0.00 12.40 9.61 5.96 4.79 12.60 12.99 2.12 15.20 20.25 13.74 19.94 4.80 5.88 16.93 26.64 40.29 71 E8a_E9b KnownJunction 1 91.79 59.20 59.55 33.93 65.11 177.17 18.02 66.25 72.16 74.70 112.98 24.16 91.07 85.47 74.42 40.07 141.37 81.33 69.08 34.71 226.11 246.95 176.79 72 I8 Intron 0 17.26 3.05 7.53 8.95 11.04 12.54 5.21 8.69 8.28 4.97 7.25 4.85 8.51 7.23 11.87 9.75 12.38 4.57 15.83 5.19 15.70 15.24 22.58 73 I8_SR1 SilentIntronRegion 0 26.31 3.57 11.06 11.01 14.07 16.66 7.39 13.55 9.68 7.08 8.32 5.80 12.62 8.28 15.53 15.16 18.41 6.31 22.34 5.43 19.67 19.59 31.83 74 E9_Aa NovelBoundary 0 58.90 15.33 9.37 23.27 14.86 12.95 9.10 24.56 8.65 9.05 10.21 6.30 6.82 15.25 5.07 15.55 20.29 12.15 39.06 22.05 29.59 81.93 30.56 75 ER9a ExonRegion 0 31.90 9.59 8.13 15.95 23.55 16.71 8.58 22.35 13.05 9.64 12.68 7.54 16.51 8.53 10.89 13.68 30.33 18.62 25.23 9.51 25.82 32.00 34.12 76 E9_Ab KnownBoundary 0 17.34 5.72 8.40 14.72 11.97 16.64 8.35 19.80 14.00 4.16 12.27 5.55 6.82 2.41 9.52 15.98 17.20 4.81 23.34 5.75 27.49 22.66 15.19 77 ER9b ExonRegion 0 74.91 51.45 62.54 66.70 57.30 132.85 27.46 72.11 66.97 82.24 110.09 47.40 65.48 72.23 67.60 76.18 161.20 96.60 107.20 48.14 259.67 236.89 214.68 78 E9_Da NovelBoundary 0 29.41 0.00 13.60 14.02 14.52 18.63 12.14 7.93 5.35 5.56 2.11 5.70 13.15 7.77 4.45 12.30 4.21 8.50 13.46 8.88 37.56 32.70 28.51 79 E9a_E10a KnownJunction 0 34.45 37.30 51.74 31.16 38.20 90.69 19.43 35.73 50.14 56.41 64.33 12.60 45.13 35.49 10.75 52.81 115.75 48.46 57.79 38.73 181.63 176.17 144.78 80 E10_Aa NovelBoundary 0 33.93 0.00 4.46 9.52 11.54 5.11 1.94 6.28 9.29 2.77 0.00 0.00 12.01 9.59 10.14 12.73 13.28 1.99 7.15 0.00 41.70 9.06 16.73 81 ER10a ExonRegion 0 106.82 50.36 74.91 79.20 62.78 149.64 36.32 99.94 85.03 86.40 120.27 37.56 49.73 88.68 90.76 97.96 164.54 116.05 127.08 58.14 362.02 306.40 269.11 82 E10a_E11a KnownJunction 0 70.23 64.73 81.19 71.69 60.02 141.91 41.91 85.31 66.98 77.09 126.40 55.82 73.05 67.51 63.04 67.93 163.07 80.79 113.79 55.74 389.26 156.51 169.19 83 ER11a ExonRegion 0 90.33 50.54 85.93 80.78 63.82 131.20 39.20 104.09 89.36 77.87 117.23 46.98 45.82 88.84 86.50 101.58 159.18 117.58 141.23 41.85 375.14 290.62 286.43 84 E11_Da NovelBoundary 0 18.00 3.35 16.47 27.00 4.33 13.00 3.93 6.12 3.01 0.00 2.32 5.25 6.66 4.94 0.00 4.27 0.00 4.27 8.38 5.69 6.12 5.14 8.62 85 E11a_E12a KnownJunction 0 91.87 66.30 64.72 69.95 83.53 109.99 40.63 98.74 71.12 59.28 111.03 24.91 19.48 117.43 132.39 129.88 187.19 107.12 166.59 56.50 363.99 293.06 294.08 86 E12_Aa NovelBoundary 0 10.59 0.00 5.26 7.33 0.00 18.46 17.58 3.33 1.36 6.02 2.58 0.00 6.66 2.47 4.45 0.00 4.49 2.36 13.08 15.02 3.15 11.21 4.35 87 ER12a ExonRegion 0 98.92 41.42 74.36 86.29 67.60 164.27 36.69 88.29 84.93 94.59 132.56 28.37 33.69 102.02 95.82 100.90 184.85 100.22 124.90 50.28 364.42 218.17 263.37 88 E12_Da KnownBoundary 0 48.90 0.00 24.75 53.01 28.01 96.08 6.01 24.15 9.32 11.95 16.90 6.15 12.66 14.83 5.44 31.36 9.54 16.08 8.85 17.39 28.05 41.33 63.00 89 E12a_E12b KnownJunction 0 96.83 35.52 64.04 52.37 34.13 113.06 40.06 47.93 69.91 86.98 134.14 43.51 34.58 72.58 33.99 69.81 183.92 56.63 104.66 58.61 367.14 127.00 174.57 90 ER12b ExonRegion 0 30.51 8.47 22.71 33.04 13.40 23.85 8.24 15.87 17.18 13.58 13.41 6.71 7.87 10.96 12.38 27.59 19.03 16.04 25.04 11.82 43.30 27.73 40.52 91 E12_Ab KnownBoundary 0 30.38 8.55 10.14 26.54 12.73 25.89 16.03 22.18 22.34 5.53 17.06 7.20 0.00 17.89 24.11 31.53 23.38 13.72 25.13 12.78 44.79 16.17 18.01 92 ER12c ExonRegion 0 129.32 61.37 66.73 63.70 58.72 104.35 39.72 51.96 56.15 58.55 73.50 26.94 23.34 58.72 69.53 71.70 95.97 54.21 66.91 30.13 191.61 171.36 166.62