Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CSDE1 Gene 0 766.32 2045.56 817.31 1355.21 1043.80 1265.89 775.04 781.29 764.43 1120.20 1087.93 1607.93 1350.44 1130.00 813.04 864.83 1069.48 890.15 808.92 1134.38 827.82 1039.28 816.33 2 438362 Transcript 0 1.85 11.27 0.20 1.36 2.51 17.50 7.42 2.52 0.67 2.39 5.72 0.00 0.00 10.05 2.06 3.53 5.50 7.24 1.66 4.17 5.74 1.91 2.69 3 369530 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 339438 Transcript 0 15.34 23.89 11.33 9.20 7.36 12.84 4.96 3.89 3.09 6.59 4.83 0.00 1.17 2.84 0.73 0.00 2.48 5.54 0.00 6.38 3.31 5.21 5.87 5 261443 Transcript 1 21.78 42.23 9.25 17.58 16.64 86.83 63.15 9.28 11.78 46.07 27.48 0.00 0.00 38.08 5.93 20.76 55.45 21.64 16.75 12.21 14.46 26.64 37.13 6 358528 Transcript 1 65.16 361.18 72.05 261.29 159.78 254.56 156.48 108.83 165.68 339.45 168.30 242.18 202.09 182.64 53.58 106.97 155.72 359.06 131.60 340.18 185.71 118.20 87.63 7 369533 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 483030 Transcript 0 45.33 67.04 30.14 68.25 104.01 85.43 80.46 49.27 51.90 42.38 58.80 75.08 84.62 41.88 39.71 37.43 26.81 29.31 24.83 42.10 6.67 70.90 30.98 9 483407 Transcript 0 91.74 46.97 60.17 75.16 75.90 71.89 46.65 53.27 53.31 46.76 61.43 45.28 46.78 43.67 61.42 67.00 46.28 96.62 46.14 49.53 45.89 71.75 25.82 10 ER1a ExonRegion 0 1.85 11.27 0.20 1.36 2.51 17.50 7.42 2.52 0.67 2.39 5.72 0.00 0.00 10.05 2.06 3.53 5.50 7.24 1.66 4.17 5.74 1.91 2.69 11 E1_Ab KnownBoundary 0 0.00 9.67 0.00 0.00 3.65 24.64 4.42 2.51 0.00 1.67 2.68 0.00 0.00 21.84 4.45 8.46 9.35 16.58 0.00 6.39 6.05 3.12 4.35 12 E1_Ac KnownBoundary 0 10.89 55.25 1.71 9.99 17.06 44.69 42.13 7.52 1.79 9.99 26.22 0.00 0.00 8.42 6.18 8.29 9.35 12.35 9.51 9.65 18.41 3.06 4.27 13 E1_Ad KnownBoundary 0 0.00 18.81 0.00 0.00 12.31 33.39 8.83 0.00 0.00 4.30 10.11 0.00 0.00 0.00 0.00 12.56 4.77 2.03 4.33 6.52 15.38 6.25 3.84 14 ER1b ExonRegion 0 8.36 50.03 1.23 4.09 17.93 65.93 36.48 5.19 3.33 9.18 26.77 0.00 0.00 47.34 12.33 15.16 18.65 15.15 7.96 20.43 39.78 8.13 6.17 15 E1_Ae KnownBoundary 0 70.23 169.38 25.43 29.33 86.25 124.64 161.68 12.40 39.79 40.75 61.59 0.00 0.00 35.73 129.67 63.57 139.04 45.39 58.45 59.76 146.54 187.86 98.25 16 ER1c ExonRegion 0 13.87 67.56 2.18 7.57 32.41 72.74 64.87 6.34 7.14 13.76 33.72 0.00 0.00 77.24 22.57 21.47 31.91 23.40 14.51 31.91 69.78 20.60 17.29 17 ER1d ExonRegion 0 69.85 200.92 17.65 44.02 63.95 179.16 169.86 23.33 48.91 86.82 89.49 2.60 8.44 105.89 143.03 74.30 189.14 63.38 78.36 66.17 172.33 229.60 124.81 18 ER1e ExonRegion 1 403.77 1206.90 108.52 317.06 369.39 1037.84 566.55 227.00 358.15 562.81 830.55 43.18 85.26 780.20 519.40 1135.50 1232.84 913.07 719.57 961.10 973.59 812.68 1333.09 19 E1a_E2a KnownJunction 1 800.96 2145.34 233.55 698.01 786.67 1714.41 867.36 481.18 769.52 1133.39 1528.39 286.44 250.31 1251.70 453.80 2212.75 1994.48 1662.40 1371.71 1971.85 1578.47 1150.88 2521.46 20 E1a_E4a KnownJunction 0 21.78 42.23 9.25 17.58 16.64 86.83 63.15 9.28 11.78 46.07 27.48 0.00 0.00 38.08 5.93 20.76 55.45 21.64 16.75 12.21 14.46 26.64 37.13 21 ER2a ExonRegion 0 165.37 882.40 264.14 650.98 483.87 858.59 460.22 495.61 663.79 911.79 1275.91 1344.85 920.05 869.50 322.39 925.73 1226.01 1125.24 657.05 1360.87 965.58 856.16 925.72 22 E2a_E3a KnownJunction 0 3.70 51.96 0.00 0.00 12.99 0.00 0.00 3.86 5.35 2.63 5.37 12.00 0.00 2.47 0.00 3.59 9.16 6.09 4.52 40.97 5.44 20.08 3.41 23 E2a_E4a KnownJunction 1 752.58 2227.70 378.34 977.03 952.12 1136.85 782.83 626.05 853.49 1183.05 1526.28 2634.41 1835.27 1297.79 399.16 967.61 1608.60 809.58 865.34 1416.60 921.97 1145.68 793.79 24 ER3a ExonRegion 0 2.12 35.18 0.74 0.14 8.03 0.18 1.32 4.32 5.93 3.67 6.57 9.09 1.88 2.92 0.00 2.97 6.60 5.91 3.19 45.32 5.07 17.29 2.64 25 ER3b ExonRegion 0 2.61 31.88 0.68 2.05 3.63 4.24 2.23 4.13 10.38 5.37 3.40 3.10 3.12 1.38 0.00 2.86 4.22 3.99 4.37 38.30 6.80 9.34 7.55 26 E3a_E4a KnownJunction 0 0.00 40.19 0.00 4.66 14.60 2.27 1.68 4.48 10.65 7.25 2.53 12.45 20.94 2.47 0.00 0.00 8.04 3.77 13.74 68.58 20.32 30.07 15.19 27 ER4a ExonRegion 1 329.64 1097.69 456.68 1058.11 562.74 1062.96 684.93 672.01 872.72 1159.74 1279.55 2443.08 1542.22 1519.74 495.39 1064.86 1373.04 956.01 791.07 1609.18 829.68 1200.76 933.97 28 E4a_E5a KnownJunction 1 368.81 1092.50 546.05 1372.55 1167.32 1558.88 1126.10 826.70 1023.77 1500.59 1764.45 2836.07 2372.41 2055.28 669.02 1228.82 1899.02 1084.21 940.64 2163.21 1064.86 1312.42 1207.89 29 ER5a ExonRegion 1 336.03 1343.23 579.99 1261.97 1027.80 1622.96 1014.03 780.19 963.47 1373.48 1751.42 2930.97 2522.90 1899.48 645.69 1333.16 1812.16 1226.49 975.71 1900.15 1037.41 1378.34 1149.14 30 E5a_E6a KnownJunction 1 55.42 365.79 75.16 347.97 197.96 241.40 144.90 126.22 209.55 429.66 184.26 162.20 190.08 208.49 33.01 106.04 149.51 342.20 106.83 351.54 211.34 135.26 85.19 31 E5a_E7a KnownJunction 1 405.26 1471.65 514.83 988.79 1074.02 1326.05 925.92 677.52 876.52 1199.84 1750.86 3047.49 2566.55 2115.03 637.62 1360.92 1894.71 924.78 1190.34 1684.35 921.16 1476.03 1152.06 32 ER6a ExonRegion 0 46.86 385.77 72.39 239.30 131.11 260.97 135.57 118.20 144.35 308.23 166.46 280.16 234.55 168.33 58.74 119.84 150.67 386.40 131.18 343.72 193.26 110.05 93.63 33 E6a_E7a KnownJunction 0 93.20 331.98 68.60 196.61 150.25 261.33 188.97 82.07 143.14 280.47 154.20 284.19 181.64 171.11 68.98 95.02 166.99 348.58 156.80 325.27 152.53 109.30 84.08 34 ER7a ExonRegion 1 362.12 1396.55 474.84 1080.73 951.97 1537.77 963.74 768.16 940.09 1357.13 1947.30 3062.66 2813.01 2195.18 642.78 1167.83 1856.01 1038.34 956.68 1676.09 1192.36 1264.48 1100.07 35 E7a_E8a KnownJunction 0 487.05 1697.72 588.27 1337.33 1158.40 2026.56 1275.64 884.41 1007.74 1474.40 2151.97 3036.99 3375.43 2226.10 881.39 1204.47 1996.44 1014.70 1015.75 1666.26 1032.55 1364.71 1150.95 36 ER8a ExonRegion 0 464.76 1646.43 511.68 1162.51 1039.72 1500.05 931.76 742.90 954.46 1358.26 1836.65 3251.69 3044.63 2032.92 710.70 1239.12 1824.67 1168.32 999.70 1655.83 1189.41 1279.87 1156.32 37 E8a_E9a KnownJunction 1 504.83 1877.23 588.60 1194.52 943.72 1316.74 989.73 700.60 1011.53 1464.70 1681.00 3730.07 2817.67 2311.86 751.35 1126.88 1656.75 909.65 1022.99 1601.06 1228.13 1331.16 1100.07 38 ER9a ExonRegion 0 484.01 1753.02 694.96 1630.68 1284.73 1813.81 1182.09 877.45 1052.15 1499.07 1850.50 3934.85 3248.16 1856.91 755.72 1198.00 1840.26 913.58 986.33 1691.47 983.91 1451.95 1095.03 39 E9a_E10a KnownJunction 0 546.17 1582.35 781.67 1754.69 1710.61 2351.26 1306.11 950.78 1175.13 1571.02 1717.59 3942.08 3131.78 1582.97 778.91 1408.86 1788.03 1134.33 1088.60 1647.15 802.49 1331.28 1066.70 40 ER10a ExonRegion 0 531.31 1700.75 917.35 2078.70 1588.42 2065.13 1304.56 1075.33 1276.26 1618.58 2014.46 4258.89 4179.26 2095.36 1044.80 1519.16 2029.32 1339.84 1327.54 1983.82 1145.16 1861.71 1393.97 41 E10a_E11a KnownJunction 0 729.83 2356.29 968.09 2111.45 1453.74 1745.93 1218.89 1161.08 1387.75 1748.23 1968.24 4558.19 3740.83 2181.36 1084.25 1660.59 2148.85 1380.15 1428.65 1973.51 1649.52 1788.32 1339.77 42 ER11a ExonRegion 0 646.52 2384.22 745.83 1701.22 1440.27 1956.84 1230.96 940.43 1111.62 1465.04 1833.68 3628.68 3318.05 2079.93 969.07 1540.69 2039.64 1376.75 1270.33 1714.37 1409.06 1593.98 1360.42 43 E11a_E12a KnownJunction 0 871.27 2681.76 689.48 1549.15 1876.91 2214.35 1681.94 837.38 981.85 1400.90 1751.18 3130.47 2508.44 2049.28 842.82 1471.41 2051.70 1413.19 1245.49 1459.10 1535.48 1545.04 1354.29 44 E11a_E13a NovelJunction 0 0.00 31.24 1.48 29.03 16.72 112.32 20.62 49.33 54.51 44.62 2.16 12.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 2.94 0.00 0.00 0.00 45 E11a_E14a NovelJunction 0 3.26 22.76 1.30 16.61 26.57 26.75 37.45 25.38 41.03 18.88 0.00 0.00 19.80 2.12 9.52 11.79 4.77 16.58 4.52 15.28 0.00 12.31 0.00 46 ER12a ExonRegion 0 682.19 1914.71 823.18 1708.42 1263.79 1672.54 1090.62 888.58 952.83 1384.05 1748.05 2958.93 2770.15 1842.72 937.68 1471.92 1869.66 1328.22 1156.40 1559.84 1236.69 1491.90 1313.80 47 E12a_E13a KnownJunction 0 885.19 1969.58 1028.53 1871.92 1470.88 1963.59 1391.57 1075.40 1045.16 1594.85 1910.06 2646.26 2437.50 2010.43 1144.33 1517.55 1961.01 1198.58 1338.49 1778.62 1340.51 1626.73 1400.13 48 ER13a ExonRegion 0 807.87 2194.12 968.42 1725.80 1648.07 2282.49 1365.69 962.94 972.43 1480.24 1657.62 2439.38 2360.19 1829.54 1037.70 1441.19 1747.97 1214.05 1172.52 1593.70 1172.43 1428.45 1248.75 49 E13a_E14a KnownJunction 0 977.28 2240.85 930.30 1589.31 1799.66 2042.06 1328.02 1025.70 998.60 1487.99 1572.29 2474.01 2543.50 1809.89 1263.99 1411.85 1774.57 1208.20 1256.98 1721.99 1345.14 1432.62 1371.61 50 ER14a ExonRegion 0 837.57 2088.92 1032.09 1712.55 1391.44 1836.99 1075.04 1068.63 1049.93 1527.22 1854.22 2135.39 2108.21 2081.49 1315.58 1607.87 1792.97 1431.18 1563.13 1625.98 1436.15 1616.91 1318.69 51 E14a_E15a KnownJunction 0 1429.22 2518.04 1212.26 2003.44 2065.54 2641.38 1778.34 1264.18 1214.14 1707.29 2450.20 2327.41 2605.51 1985.94 1293.04 1503.45 2386.72 1255.71 1633.08 1826.37 1498.90 1529.67 1179.97 52 ER15a ExonRegion 0 1471.09 2249.97 1048.32 1729.26 1734.91 2131.49 1398.10 1104.75 1107.87 1605.37 2239.39 1976.68 1895.98 1847.50 1140.19 1376.70 2178.17 1367.48 1335.89 1649.31 1536.27 1354.29 1159.75 53 E15_Ab KnownBoundary 0 1854.11 2458.18 1035.00 1820.71 1785.15 2151.37 1494.42 1087.76 1110.12 1605.75 1954.44 1950.64 1339.85 1858.98 1289.33 1338.37 1998.41 1385.87 1167.94 1720.97 1640.93 1276.90 1214.38 54 ER15b ExonRegion 0 1075.48 2197.68 1313.53 2136.77 1563.98 2074.07 1287.40 1229.68 1230.83 1791.57 1824.91 2215.77 1899.26 1905.64 1409.37 1713.85 1778.92 1576.24 1455.78 1765.24 1445.46 1714.16 1382.11 55 E15a_E16a KnownJunction 0 1726.75 3221.66 1825.33 2874.26 2499.58 2619.57 1615.56 1486.22 1510.40 2075.68 2675.31 2486.16 2440.75 2238.34 1470.80 1885.57 2479.94 1884.35 2493.53 2356.43 2160.66 2233.25 1652.29 56 ER16a ExonRegion 0 1004.62 2164.41 1639.83 2509.00 1843.12 2354.53 1256.25 1279.44 1251.25 1826.64 2019.30 2182.43 1927.19 1964.01 1413.12 1649.61 1850.63 2093.58 1423.12 1877.04 1843.59 1504.87 1469.70 57 E16a_E17a KnownJunction 0 1921.75 3034.06 2515.23 3621.05 3101.53 3793.10 2125.90 1820.36 1610.52 2298.79 2808.08 2488.26 1966.75 2033.09 1759.07 2654.43 2448.81 3092.80 2080.81 2648.47 2557.09 2446.09 2127.50 58 ER17a ExonRegion 0 1027.32 2244.75 1757.29 2522.16 1569.77 2118.68 1174.44 1319.78 1209.17 1718.29 1945.95 2298.12 1863.00 1918.17 1694.48 1980.20 1822.09 2527.95 1903.12 2014.27 1947.22 1838.98 1784.70 59 E17a_E18a KnownJunction 0 1271.19 2213.03 1322.34 2000.61 1616.81 1704.87 1030.54 1173.53 981.50 1465.64 1839.31 1609.42 1285.31 1680.80 1532.48 1112.19 1702.66 1728.77 1080.22 1825.99 1832.01 1206.18 1185.10 60 ER18a ExonRegion 0 1459.43 2343.27 1525.74 2023.71 1306.33 1941.21 975.86 1112.45 1007.59 1499.70 1533.65 1692.51 1194.62 1771.38 1632.68 1464.43 1496.97 2169.68 1274.29 1750.51 1636.46 1275.75 1433.31 61 E18_Da KnownBoundary 0 85.27 78.60 21.17 52.21 63.50 52.64 54.50 39.51 53.24 30.09 71.23 37.81 47.40 42.50 36.96 52.98 38.34 60.31 16.57 43.14 22.73 52.72 40.72 62 E18a_E19a KnownJunction 0 1532.57 2308.40 1404.00 1864.36 1608.57 2439.45 1203.04 1124.36 1059.22 1509.05 1362.13 1368.15 946.69 1733.54 1794.18 1173.37 1438.80 1944.08 1340.93 1862.80 1366.52 1142.25 1285.48 63 ER18b ExonRegion 0 45.33 67.04 30.14 68.25 104.01 85.43 80.46 49.27 51.90 42.38 58.80 75.08 84.62 41.88 39.71 37.43 26.81 29.31 24.83 42.10 6.67 70.90 30.98 64 ER19a ExonRegion 0 1019.55 1578.45 1350.01 1838.93 1238.84 1962.87 896.51 1039.67 1015.07 1461.99 1343.42 1087.78 630.32 1682.17 1849.65 1365.08 1385.77 1810.99 1386.88 1579.51 1452.96 1119.04 1362.76 65 E19a_E20b KnownJunction 1 948.76 1646.22 1485.05 2067.10 1004.92 1536.67 946.54 1287.84 1102.36 1541.31 1083.38 940.21 323.52 1628.41 2102.61 1162.09 1114.54 1877.55 1484.09 1630.46 1394.87 1177.58 1227.61 66 ER20a ExonRegion 0 91.74 46.97 60.17 75.16 75.90 71.89 46.65 53.27 53.31 46.76 61.43 45.28 46.78 43.67 61.42 67.00 46.28 96.62 46.14 49.53 45.89 71.75 25.82 67 E20_Ab KnownBoundary 0 113.80 68.21 70.67 98.96 74.02 86.43 43.54 68.31 62.18 39.41 57.59 44.11 27.60 74.93 66.14 79.64 34.13 121.21 52.24 53.82 61.84 105.44 25.95 68 ER20b ExonRegion 0 952.72 1562.13 1468.45 1831.81 1131.66 1679.11 790.31 1134.21 1036.29 1528.72 1331.17 1003.45 532.96 1490.41 1798.78 1134.59 1335.94 1528.79 1316.95 1457.54 1583.15 1202.38 1125.91 69 E20a_E21a KnownJunction 1 1278.45 2280.45 1742.87 2270.61 915.11 1469.72 838.25 1456.86 1203.08 1856.56 1246.95 635.31 278.72 1526.52 1727.80 1104.67 1166.99 1667.92 1348.09 1382.66 1160.36 1298.40 1258.68 70 ER21a ExonRegion 0 1373.23 3237.60 1504.83 2450.25 1710.64 1901.59 1216.71 1309.46 1099.97 1737.99 1182.83 1351.45 971.97 1031.44 1259.12 723.27 993.53 651.84 1013.66 1227.96 689.75 1549.75 770.72 71 E21_Da KnownBoundary 1 1676.07 3825.90 1551.63 2876.16 1389.47 1011.58 849.73 1407.61 1087.26 1689.00 597.20 1697.95 1275.89 805.05 1430.25 492.43 546.80 235.83 728.96 1167.83 181.01 1812.82 530.87 72 ER21b ExonRegion 1 2182.29 7211.41 1387.73 2053.44 1741.62 1074.33 884.95 1169.37 802.27 1387.34 497.47 1448.38 1349.26 616.51 970.18 331.27 421.19 146.05 487.26 736.30 212.55 1139.13 389.84 73 E21_Db KnownBoundary 0 45.12 145.37 1.48 20.31 145.93 26.92 4.11 4.11 2.98 12.25 14.74 69.02 46.75 55.68 130.79 15.81 12.90 2.07 31.15 3.26 5.62 5.76 12.21 74 E21_Dc KnownBoundary 0 481.42 1992.08 351.79 398.68 902.72 492.61 311.61 394.56 313.48 439.86 376.20 726.84 374.65 255.75 412.26 171.49 321.36 89.95 279.07 402.55 352.19 532.92 266.16 75 ER21c ExonRegion 0 305.65 1322.19 263.74 306.25 626.12 336.99 210.04 296.99 233.87 349.94 276.40 546.28 318.09 282.88 357.71 133.75 224.27 81.19 204.61 263.95 242.93 373.93 206.95 76 ER21d ExonRegion 0 473.94 748.49 536.78 645.72 689.89 485.89 307.32 460.78 399.07 538.29 204.98 379.34 265.51 298.01 368.77 145.21 209.10 202.45 341.36 345.42 343.74 386.87 243.94 77 ER21e ExonRegion 0 15.34 23.89 11.33 9.20 7.36 12.84 4.96 3.89 3.09 6.59 4.83 0.00 1.17 2.84 0.73 0.00 2.48 5.54 0.00 6.38 3.31 5.21 5.87