Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-389O22.2 Gene 0 15.11 32.47 20.75 56.26 24.88 20.67 15.67 13.06 10.72 12.04 6.35 4.64 16.69 9.57 14.78 22.89 18.91 15.96 14.66 17.19 8.90 4.11 13.51 2 413231 Transcript 0 5.59 27.16 11.86 32.46 28.76 31.49 18.95 11.39 5.70 8.63 5.53 8.38 33.58 12.96 16.32 38.85 31.47 21.68 15.96 22.31 7.34 5.46 18.87 3 451149 Transcript 0 5.94 5.61 10.66 20.89 4.49 8.13 6.70 7.07 6.50 6.83 2.67 1.10 4.28 4.71 4.48 7.30 8.11 5.91 9.30 5.88 7.11 0.32 8.56 4 IG46 Intergenic 0 12.77 20.86 21.87 44.68 13.98 9.58 16.98 7.45 6.32 9.26 4.14 15.00 26.79 6.98 16.99 22.29 19.92 23.61 20.82 26.09 8.07 5.30 20.78 5 IG46_SR1 SilentIntergenicRegion 0 12.78 20.87 21.88 44.70 13.99 9.58 16.98 7.45 6.32 9.26 4.14 15.01 26.80 6.99 17.00 22.30 19.93 23.62 20.83 26.10 8.07 5.30 20.79 6 ER1a ExonRegion 0 11.18 54.32 22.62 64.92 57.52 62.98 37.90 20.22 11.40 14.34 11.06 16.75 67.15 25.93 32.65 77.69 62.93 43.36 31.91 44.62 14.68 10.92 37.74 7 E1_Da NovelBoundary 0 52.90 44.53 52.57 112.64 32.43 25.67 19.43 21.15 15.83 29.47 18.22 60.92 113.30 21.60 24.11 75.28 63.02 57.62 45.84 19.37 24.59 8.08 63.17 8 E1a_E3a KnownJunction 0 0.00 0.00 1.09 0.00 0.00 0.00 0.00 2.55 0.00 2.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 I1 Intron 0 14.45 39.43 21.12 51.01 18.57 19.60 18.67 12.48 11.56 9.98 8.30 17.79 34.46 16.01 22.90 38.31 29.82 20.14 23.16 18.28 13.36 3.44 21.03 10 I1_SR1 SilentIntronRegion 0 14.49 39.51 21.17 51.11 18.61 19.64 18.71 12.51 11.58 10.00 8.32 17.82 34.54 16.04 22.95 38.39 29.88 20.19 23.21 18.32 13.38 3.45 21.07 11 Ix Intron 0 20.32 23.39 23.24 55.00 24.67 24.87 21.42 13.14 11.76 17.53 5.77 13.88 29.41 6.63 17.11 20.57 16.48 20.22 21.45 19.34 8.39 4.97 16.96 12 Ix_SR1 SilentIntronRegion 0 17.02 14.49 7.60 24.35 15.48 23.54 18.68 4.54 5.71 7.47 5.45 13.78 25.24 6.83 20.05 19.71 16.30 15.24 14.16 18.91 8.55 3.97 20.50 13 Ix_SR2 SilentIntronRegion 0 21.81 25.44 25.64 60.78 26.34 25.61 22.24 14.75 13.00 19.20 5.68 15.43 31.62 6.88 17.42 20.80 17.19 21.79 23.12 20.63 8.49 5.33 16.82 14 Ix_AR2 ActiveIntronRegion 0 16.53 25.55 27.76 60.86 29.96 21.93 22.12 15.42 11.84 21.25 8.58 2.50 27.53 6.41 18.11 26.86 16.70 21.27 23.42 16.94 12.15 3.83 23.84 15 Ix_SR3 SilentIntronRegion 0 8.62 9.08 14.57 25.19 13.68 19.51 14.42 4.37 5.32 9.39 5.34 1.91 7.52 2.99 6.51 13.67 6.51 6.28 9.63 3.92 3.48 2.74 6.56 16 E2_Aa NovelBoundary 0 22.74 3.09 38.76 88.60 18.85 4.71 3.80 15.07 8.04 19.56 5.11 12.60 6.82 4.77 17.80 26.40 16.74 32.62 38.50 21.54 14.33 0.00 22.54 17 ER2a ExonRegion 0 8.11 11.22 21.32 41.79 8.98 10.91 13.39 14.14 13.01 13.65 5.34 2.19 8.56 9.42 8.97 14.61 16.23 11.81 18.59 11.77 14.22 0.64 17.12 18 E2_Da NovelBoundary 0 10.59 24.14 7.57 46.91 53.23 26.75 11.97 16.92 19.33 23.18 2.47 11.70 13.47 10.24 10.38 31.10 13.28 23.79 17.13 8.82 14.09 0.00 24.24 19 E2a_E3a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 5.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 Ix Intron 0 10.53 22.68 21.36 51.25 16.56 24.02 13.09 13.44 8.10 15.07 5.48 5.48 9.04 6.67 11.42 13.70 12.16 21.76 19.83 11.02 9.91 5.07 10.46 21 Ix_SR1 SilentIntronRegion 0 10.99 23.45 23.09 52.96 17.18 26.10 14.13 15.10 8.82 16.70 5.52 6.72 10.46 7.55 11.85 15.89 14.36 25.52 25.82 12.56 11.90 5.99 12.66 22 Ix_AR1 ActiveIntronRegion 0 5.53 11.36 13.89 32.59 8.27 12.86 7.08 7.96 4.81 11.78 4.37 2.12 4.66 5.24 7.32 10.95 7.05 15.61 10.60 9.61 9.16 3.47 8.73 23 Ix_AR3 ActiveIntronRegion 0 12.69 25.25 30.39 77.87 30.22 27.05 19.22 20.25 10.61 16.61 7.04 6.41 14.63 5.91 10.14 11.40 8.51 14.71 7.10 10.00 4.63 4.25 6.72 24 Ix_SR4 SilentIntronRegion 0 10.99 47.53 28.63 82.02 14.24 44.31 17.35 17.51 6.89 13.40 7.54 7.48 18.48 10.32 16.47 12.43 12.10 21.09 25.68 12.98 7.66 5.45 9.40 25 Ix_AR4 ActiveIntronRegion 0 8.23 24.51 20.61 55.31 11.98 22.11 9.16 9.44 7.83 15.50 5.43 1.12 3.04 4.75 13.21 10.37 9.75 19.72 8.87 5.73 7.37 3.49 6.14 26 Ix_AR5 ActiveIntronRegion 0 20.06 27.52 11.54 53.16 25.36 14.07 14.93 10.46 7.48 8.49 7.85 1.61 2.12 4.14 17.25 6.71 5.96 17.81 5.75 12.48 4.95 2.82 5.28 27 E3_Aa NovelBoundary 0 35.86 56.44 28.33 126.72 32.60 12.66 20.36 16.39 20.57 34.25 7.42 0.00 6.82 7.36 37.09 14.53 11.87 16.25 0.00 30.23 8.71 11.88 0.00 28 ER3a ExonRegion 0 20.97 36.87 19.66 61.73 21.73 9.90 8.26 9.56 9.04 10.14 5.11 1.35 1.68 3.18 11.27 6.26 3.12 7.66 5.40 9.65 3.33 3.54 1.69