Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-421L21.2 Gene 0 55.76 46.51 20.10 47.13 44.64 38.94 23.50 16.89 10.10 24.92 9.54 41.62 60.65 41.20 39.70 28.21 24.18 17.19 28.54 25.42 14.04 16.89 12.00 2 421013 Transcript 0 7.41 9.01 0.97 3.86 7.73 6.17 3.95 1.67 1.38 3.03 4.14 7.81 13.70 11.09 5.83 5.60 3.46 5.84 6.05 7.40 2.62 3.70 4.30 3 453011 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 446527 Transcript 0 2.96 0.00 1.83 1.40 4.33 2.78 0.00 2.09 1.79 2.66 4.84 5.40 6.66 6.77 8.90 0.00 0.00 0.00 8.09 0.00 5.81 2.94 0.00 5 416329 Transcript 0 0.00 0.00 0.00 0.19 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.46 0.00 0.00 0.37 0.00 0.00 0.00 6 454721 Transcript 0 0.00 12.76 6.68 8.32 15.20 31.91 4.02 2.55 1.22 8.92 0.00 51.02 21.26 10.30 0.00 17.60 17.67 4.77 8.47 2.43 2.84 5.14 4.01 7 449473 Transcript 0 4.23 2.03 0.00 2.04 5.35 0.92 1.32 0.00 0.00 2.29 0.00 0.00 0.00 2.44 5.80 0.00 3.30 0.00 3.19 0.00 0.00 0.00 0.00 8 451213 Transcript 0 76.91 80.08 27.53 65.96 54.51 36.14 32.04 17.21 8.47 27.27 6.00 40.84 60.68 23.71 22.88 17.93 14.32 21.49 28.10 20.73 8.47 14.27 10.60 9 ER1a ExonRegion 0 9.69 5.94 0.57 0.63 0.72 9.80 4.43 0.00 0.71 0.62 0.00 0.00 0.00 0.50 0.00 6.06 0.00 0.00 4.17 4.99 1.19 0.00 7.23 10 ER1b ExonRegion 1 37.27 15.87 3.14 1.36 7.18 46.25 13.05 0.55 1.54 4.67 1.04 0.00 0.00 14.62 16.98 31.39 0.48 2.03 19.03 17.75 14.46 2.19 19.55 11 E1_Ac KnownBoundary 0 58.97 14.93 6.18 3.60 18.08 69.68 14.75 3.41 3.88 11.04 4.16 0.00 5.84 36.02 49.45 52.38 8.79 14.96 34.82 23.59 28.17 5.39 15.54 12 ER1c ExonRegion 0 18.99 13.96 5.78 7.54 12.85 19.02 6.56 10.57 3.50 10.50 6.42 3.81 2.15 22.81 26.30 19.15 14.95 9.24 14.92 12.39 26.54 3.37 11.54 13 E1a_E3a KnownJunction 0 3.78 8.88 6.45 9.62 4.16 13.63 2.25 11.21 6.11 9.94 11.27 11.10 19.64 20.43 10.26 23.33 8.13 7.83 9.60 37.33 26.63 0.00 7.60 14 E1a_E4b KnownJunction 0 2.96 0.00 1.83 1.40 4.33 2.78 0.00 2.09 1.79 2.66 4.84 5.40 6.66 6.77 8.90 0.00 0.00 0.00 8.09 0.00 5.81 2.94 0.00 15 E1a_E5a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 8.01 0.00 5.09 1.74 4.19 2.05 0.00 0.00 2.24 14.34 0.00 9.07 0.00 0.00 0.00 5.19 0.00 0.00 16 E1a_E8b NovelJunction 0 0.00 3.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.00 0.00 0.00 0.00 2.47 4.70 0.00 0.00 2.03 0.00 0.00 12.54 0.00 0.00 17 E1a_E10a NovelJunction 0 0.00 2.50 2.84 1.56 0.00 2.61 1.63 0.00 3.36 5.37 6.79 0.00 0.00 2.12 24.97 0.00 8.23 8.75 0.00 5.31 0.00 5.45 7.94 18 I1 Intron 0 5.62 2.60 1.40 3.97 4.19 1.28 5.46 2.20 0.99 2.16 1.56 16.92 18.89 6.50 4.32 6.04 7.03 1.33 1.80 5.16 1.00 0.52 0.98 19 I1_SR1 SilentIntronRegion 0 6.66 2.66 1.48 4.41 4.52 1.61 6.35 2.18 0.97 2.04 2.28 21.50 23.16 8.35 5.43 7.69 8.79 1.63 2.33 6.15 1.17 0.69 1.22 20 I1_AR5 ActiveIntronRegion 0 6.35 0.00 2.45 2.50 9.22 0.00 3.97 3.46 1.99 5.93 0.00 8.66 16.94 7.49 8.70 9.91 7.15 1.13 6.37 1.65 1.47 2.08 2.94 21 ER2a ExonRegion 0 0.00 0.00 0.00 0.19 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.41 0.46 0.00 0.00 0.37 0.00 0.00 0.00 22 I2 Intron 0 1.88 1.24 0.68 1.58 2.66 1.25 3.72 1.17 0.63 1.15 0.66 11.73 18.60 7.69 2.19 5.65 5.61 1.88 1.97 4.69 1.33 0.89 1.08 23 I2_SR1 SilentIntronRegion 0 1.88 1.24 0.69 1.58 2.66 1.25 3.72 1.17 0.63 1.15 0.66 11.73 18.62 7.70 2.19 5.66 5.62 1.89 1.97 4.70 1.33 0.89 1.08 24 E3_Aa NovelBoundary 0 0.00 2.76 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.31 19.32 12.48 4.94 11.79 14.31 0.00 4.05 5.43 3.15 0.00 7.51 25 ER3a ExonRegion 0 5.47 12.44 5.60 22.50 16.07 21.31 12.43 4.26 5.60 17.19 6.49 34.18 42.95 38.82 22.96 26.07 23.18 14.08 14.34 26.19 18.34 5.97 16.09 26 E3_Da NovelBoundary 0 0.00 0.00 0.00 1.60 7.22 8.35 0.00 0.00 0.00 1.32 0.00 26.26 21.75 18.48 0.00 8.12 0.00 0.00 0.00 6.39 0.00 0.00 0.00 27 E3a_E4a KnownJunction 0 7.56 6.18 1.12 16.18 7.72 4.88 6.36 4.39 0.00 7.39 4.42 18.91 0.00 18.72 4.45 0.00 20.38 1.58 4.80 11.44 2.84 0.00 3.67 28 E3a_E4b KnownJunction 0 0.00 12.76 6.68 8.32 15.20 31.91 4.02 2.55 1.22 8.92 0.00 51.02 21.26 10.30 0.00 17.60 17.67 4.77 8.47 2.43 2.84 5.14 4.01 29 I3 Intron 0 2.76 5.94 1.31 5.36 3.83 6.44 6.50 2.80 1.94 2.50 1.86 22.34 31.86 12.56 4.47 6.56 5.03 2.98 4.06 9.59 1.30 2.53 1.83 30 I3_SR1 SilentIntronRegion 0 2.76 5.94 1.31 5.37 3.83 6.45 6.51 2.80 1.95 2.50 1.86 22.36 31.88 12.57 4.47 6.56 5.03 2.98 4.06 9.59 1.30 2.53 1.83 31 E4_Aa NovelBoundary 1 3.78 2.83 1.83 9.69 12.31 2.78 5.96 2.46 1.79 9.67 0.00 12.45 90.90 36.85 5.69 16.15 16.46 4.31 8.09 20.52 2.41 11.27 4.35 32 ER4a ExonRegion 0 34.95 16.46 3.60 30.46 18.44 32.85 10.27 10.95 7.10 13.82 7.99 31.51 59.08 44.77 22.48 27.65 32.32 13.73 16.01 26.41 14.50 9.19 8.09 33 E4_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E4a_E4b NovelJunction 0 37.12 19.01 2.87 29.53 13.92 19.93 17.75 4.97 5.84 16.14 9.58 82.98 68.66 39.67 19.04 43.83 17.77 15.67 0.00 39.37 7.48 2.76 11.18 35 E4_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E4a_E5a KnownJunction 0 2.74 0.00 1.39 8.69 0.00 0.00 4.42 0.00 0.00 3.09 0.00 0.00 8.28 2.18 9.64 0.00 9.07 0.00 0.00 2.56 0.00 0.00 0.00 37 ER4b ExonRegion 0 25.40 24.40 12.25 32.71 26.76 42.18 23.83 6.91 8.65 25.23 17.40 108.24 89.11 55.22 26.11 56.47 46.21 14.78 25.48 40.43 19.83 12.50 14.68 38 ER4c ExonRegion 1 32.41 24.18 10.23 30.50 38.46 47.73 20.03 13.90 6.77 22.56 13.61 64.97 115.75 78.08 32.23 58.50 46.89 26.72 32.01 36.81 24.56 15.78 14.65 39 E4_Db NovelBoundary 0 3.78 21.25 20.52 22.71 18.68 13.34 40.14 10.06 9.43 21.87 10.42 55.07 97.07 43.26 24.85 27.34 50.12 17.91 17.79 28.70 10.38 8.33 15.11 40 E4b_E5a KnownJunction 0 14.00 14.21 13.04 20.01 43.12 55.08 20.14 10.60 9.43 12.71 0.00 5.85 43.18 55.74 21.14 47.00 17.77 18.70 26.54 28.63 17.30 11.08 8.28 41 E4b_E8b NovelJunction 0 17.86 0.00 0.00 2.96 0.00 0.00 0.00 0.00 0.00 0.00 5.00 6.30 6.82 14.83 0.00 8.63 12.44 1.78 0.00 0.00 5.62 0.00 4.35 42 E4b_E10a NovelJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 1.29 0.00 0.00 0.00 4.94 4.45 12.99 0.00 0.00 0.00 3.26 0.00 0.00 0.00 43 I4 Intron 0 15.38 13.09 3.95 14.65 15.59 18.52 14.62 7.86 5.41 6.92 4.51 28.01 49.12 26.48 18.57 14.51 16.67 5.67 9.01 20.54 3.67 7.98 3.59 44 I4_SR1 SilentIntronRegion 0 15.42 13.12 3.96 14.68 15.63 18.56 14.65 7.88 5.43 6.94 4.52 28.07 49.22 26.54 18.60 14.55 16.70 5.68 9.03 20.59 3.67 8.00 3.59 45 E5_Aa NovelBoundary 0 3.63 24.47 1.83 7.39 20.63 27.82 20.89 4.64 7.26 6.02 5.37 37.36 19.64 23.66 33.01 3.76 8.79 3.69 4.80 29.59 3.03 9.00 0.00 46 ER5a ExonRegion 0 40.30 40.59 21.82 36.96 63.17 56.42 27.18 20.98 14.38 27.45 13.40 62.24 77.96 63.15 63.39 39.17 37.85 17.43 38.81 29.70 14.84 19.64 13.46 47 E5_Da NovelBoundary 0 0.00 9.41 1.54 1.63 10.36 17.38 2.16 2.26 1.24 1.40 0.00 18.91 35.55 15.77 4.45 11.96 7.48 16.58 0.00 17.90 0.00 5.33 0.00 48 E5a_E6a KnownJunction 0 18.97 14.67 8.40 5.89 30.31 31.52 2.21 5.09 7.23 11.63 2.26 25.21 20.62 9.65 6.30 7.09 0.00 4.19 11.67 15.40 0.00 5.39 4.35 49 E5a_E8b KnownJunction 0 45.19 8.62 12.15 14.58 50.34 61.16 14.79 14.13 9.20 9.32 2.21 7.65 21.91 16.78 55.26 43.15 24.31 6.14 11.86 11.19 0.00 5.69 23.73 50 E5a_E10a NovelJunction 0 5.63 0.00 1.42 1.86 7.22 0.00 0.00 0.00 1.74 5.10 2.42 6.00 6.82 10.01 8.90 0.00 8.04 1.58 0.00 5.62 0.00 0.00 0.00 51 I5 Intron 0 6.82 8.09 2.02 8.18 15.63 9.28 9.63 3.18 4.08 6.32 3.11 17.94 34.79 15.82 8.31 11.37 10.72 7.61 9.78 14.73 5.44 5.09 3.55 52 I5_SR1 SilentIntronRegion 0 2.36 4.83 0.80 4.37 11.32 7.86 7.67 1.79 1.90 3.90 0.75 5.25 16.84 8.05 5.12 10.66 5.01 4.77 7.38 12.87 5.77 2.41 1.83 53 I5_AR1 ActiveIntronRegion 0 5.77 5.42 1.21 7.30 11.60 8.34 5.80 3.36 3.75 8.04 4.39 13.80 17.05 20.80 9.72 12.11 13.41 5.89 10.00 13.77 6.76 3.89 3.26 54 I5_SR2 SilentIntronRegion 0 8.07 9.83 2.59 9.24 18.16 9.95 11.66 3.34 4.61 6.01 2.98 21.98 45.71 15.04 8.27 11.20 10.56 8.87 10.12 15.50 4.81 6.09 3.98 55 E6_Aa NovelBoundary 0 14.08 18.62 5.65 18.31 21.73 17.43 11.53 3.41 7.35 23.96 5.11 12.60 46.43 24.84 0.00 11.54 12.62 4.44 18.07 33.88 3.09 23.64 0.00 56 ER6a ExonRegion 0 36.30 28.33 14.37 30.92 36.97 43.82 18.95 12.76 11.92 26.99 6.89 53.67 56.17 35.40 19.22 27.33 18.63 8.62 19.99 28.61 10.20 14.39 11.02 57 E6_Da KnownBoundary 0 49.49 27.82 13.36 33.73 34.89 23.57 20.18 6.78 10.42 18.05 4.63 36.16 59.74 31.49 5.69 40.67 16.46 4.56 3.58 31.77 4.82 21.55 17.16 58 ER6b ExonRegion 0 28.51 21.09 7.35 15.93 22.67 20.93 10.83 2.78 5.26 11.00 3.52 23.85 40.46 26.15 10.07 29.49 8.74 2.54 5.56 19.82 8.51 15.69 6.28 59 E6_Db NovelBoundary 0 17.86 6.64 3.02 27.10 28.35 12.61 24.95 11.67 4.89 16.68 5.37 57.32 38.80 19.60 0.00 11.88 9.16 1.70 12.99 20.90 6.30 18.37 11.61 60 E6b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 0.00 0.00 0.00 5.47 4.70 0.00 4.68 0.00 0.00 0.00 0.00 0.00 0.00 61 E6b_E8b KnownJunction 0 10.52 6.31 5.91 3.76 19.61 24.30 6.27 0.00 3.01 5.67 0.00 0.00 0.00 2.41 4.45 0.00 4.68 0.00 7.72 3.20 3.09 0.00 4.35 62 I6 Intron 0 19.23 19.62 7.55 17.69 22.97 14.36 11.12 4.68 4.50 13.28 5.21 29.22 31.68 15.35 7.26 9.68 7.86 12.50 15.97 17.73 6.90 8.75 6.81 63 I6_AR1 ActiveIntronRegion 0 20.26 20.83 8.06 18.89 24.36 15.34 11.87 5.00 4.80 14.18 5.56 28.63 32.29 16.04 7.16 10.34 8.40 13.35 16.63 18.80 7.23 9.20 7.27 64 I6_SR1 SilentIntronRegion 1 4.15 1.96 0.00 0.00 2.62 0.00 0.00 0.00 0.00 0.00 0.00 37.80 22.73 5.18 8.76 0.00 0.00 0.00 6.25 2.09 2.08 2.04 0.00 65 E7_Aa NovelBoundary 0 32.38 35.26 1.83 6.99 34.13 2.73 20.01 5.13 7.67 8.54 0.00 17.56 47.56 29.78 13.60 7.60 7.67 24.62 4.80 27.48 12.85 12.31 8.54 66 ER7a ExonRegion 0 19.94 30.08 3.33 12.93 17.71 14.87 11.38 4.28 4.81 8.45 6.43 31.24 54.81 35.97 18.63 16.32 9.17 20.87 20.03 19.04 9.31 11.68 9.98 67 E7_Da NovelBoundary 0 3.78 71.04 5.62 22.14 31.24 7.67 18.55 2.42 4.02 14.53 7.53 11.70 19.48 12.42 0.00 19.40 4.77 20.77 3.67 14.89 8.53 22.66 0.00 68 E7a_E8b KnownJunction 0 0.00 0.00 0.00 1.90 12.48 0.00 0.00 2.38 0.00 1.45 10.11 0.00 0.00 2.41 0.00 0.00 0.00 2.49 0.00 5.56 0.00 3.12 0.00 69 I7 Intron 0 26.91 44.43 7.47 30.57 30.69 17.82 20.22 10.92 5.38 17.60 3.25 26.13 41.12 17.50 7.94 14.55 9.89 6.05 22.58 12.13 2.74 10.97 5.79 70 I7_SR1 SilentIntronRegion 0 20.13 42.41 5.86 24.33 17.32 9.21 14.47 14.58 5.26 14.87 2.77 11.29 36.88 16.25 6.15 16.59 7.82 8.66 19.36 15.13 2.36 11.12 9.15 71 I7_AR1 ActiveIntronRegion 0 31.73 46.05 8.63 35.04 40.12 23.88 24.30 8.43 5.49 19.59 3.60 36.54 44.26 18.45 9.23 13.20 11.37 4.28 24.92 10.09 3.01 10.92 3.49 72 E8_Aa NovelBoundary 0 35.86 31.31 20.16 57.80 27.16 13.74 26.98 10.51 7.58 22.13 4.79 24.61 6.33 26.13 15.45 15.72 4.77 5.31 26.54 16.62 0.00 17.45 0.00 73 ER8a ExonRegion 0 76.91 80.08 27.53 65.96 54.51 36.14 32.04 17.21 8.47 27.27 6.00 40.84 60.68 23.71 22.88 17.93 14.32 21.49 28.10 20.73 8.47 14.27 10.60 74 E8_Ab KnownBoundary 0 82.01 69.92 39.35 77.68 74.45 51.45 55.16 17.91 16.41 39.22 9.53 27.61 66.88 23.90 47.59 14.70 15.80 7.63 37.93 25.31 6.24 10.96 3.59 75 ER8b ExonRegion 0 170.96 130.52 63.66 92.74 190.22 153.12 67.22 40.54 25.94 53.49 24.86 73.99 132.81 93.46 112.36 64.58 70.52 15.45 87.60 51.84 21.74 34.09 27.50 76 ER8c ExonRegion 0 142.62 96.67 42.26 93.41 93.06 97.49 44.32 35.29 24.27 43.23 23.90 79.36 104.37 81.08 103.01 47.19 50.49 24.55 75.78 43.75 25.26 34.18 26.62 77 E8b_E9a KnownJunction 0 0.00 3.35 1.33 7.39 12.22 2.67 6.40 2.22 0.00 1.56 2.42 0.00 6.82 5.36 4.57 0.00 0.00 4.73 0.00 0.00 0.00 0.00 3.84 78 E8b_E10a KnownJunction 0 165.36 60.12 16.79 86.70 70.88 105.56 53.22 40.62 17.25 28.58 26.11 45.31 108.76 74.93 143.64 47.51 12.25 23.63 46.50 42.31 22.36 29.45 22.79 79 E9_Aa NovelBoundary 0 25.34 0.00 0.00 10.16 4.33 2.73 4.50 4.35 5.87 2.63 0.00 0.00 0.00 7.59 0.00 4.19 0.00 7.42 0.00 12.08 0.00 0.00 0.00 80 ER9a ExonRegion 0 9.18 6.39 1.95 9.85 14.57 4.17 4.32 2.69 0.00 2.42 1.82 1.72 14.69 9.12 8.18 4.29 6.32 0.99 0.03 4.13 1.06 2.61 0.39 81 E9_Da NovelBoundary 0 13.71 8.75 1.63 7.36 31.58 2.90 4.28 0.00 3.15 8.43 0.00 11.85 37.98 16.54 10.38 8.72 11.78 15.67 9.60 2.81 2.90 0.00 0.00 82 E9a_E10a KnownJunction 0 3.56 0.00 0.00 2.96 0.00 0.00 0.00 2.18 0.00 1.48 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.06 0.00 83 I9 Intron 0 33.97 8.58 4.08 17.97 28.11 8.87 9.15 6.39 2.44 6.78 3.52 6.92 23.78 12.26 15.74 6.52 4.64 2.05 3.03 2.29 1.82 3.71 2.06 84 I9_AR1 ActiveIntronRegion 0 30.96 8.34 2.62 15.45 30.26 11.38 11.33 5.58 2.75 7.23 5.72 8.32 33.98 18.61 15.68 11.23 5.86 3.10 5.29 3.55 3.29 3.37 3.05 85 I9_SR2 SilentIntronRegion 0 40.32 9.09 5.74 21.97 28.62 7.89 8.55 7.86 2.52 7.35 2.47 6.33 17.39 8.50 16.17 4.05 4.05 1.63 1.31 1.56 1.02 3.84 1.66 86 I9_AR2 ActiveIntronRegion 0 13.89 7.01 1.54 7.91 17.03 3.86 3.41 2.17 0.78 2.16 0.00 4.29 15.35 5.89 13.93 0.07 2.78 0.00 2.69 0.90 0.00 4.39 0.17 87 E10_Aa NovelBoundary 0 45.34 15.39 6.50 21.94 15.79 2.44 5.70 7.27 2.98 10.96 0.00 0.00 0.00 2.47 22.99 8.54 0.00 0.00 0.00 5.88 0.00 5.69 7.09 88 ER10a ExonRegion 0 101.49 47.94 44.61 96.24 71.61 64.40 32.65 44.79 29.36 54.09 25.01 53.83 64.75 76.91 133.58 47.41 49.80 16.70 56.86 43.74 24.94 50.30 17.59 89 E10_Da KnownBoundary 0 133.36 30.85 27.05 47.55 145.67 41.96 30.38 23.70 10.45 23.50 5.32 51.62 60.87 54.86 75.65 30.42 16.83 10.57 23.25 18.09 9.14 37.84 8.19 90 ER10b ExonRegion 0 57.12 14.55 18.03 29.38 51.64 19.21 18.79 14.13 2.59 17.13 2.43 33.19 41.22 26.22 51.77 10.24 7.12 6.69 9.84 12.17 1.89 9.05 1.11 91 ER10c ExonRegion 0 15.87 2.03 0.00 4.77 10.70 1.83 9.93 0.00 0.00 5.16 0.00 0.00 4.69 5.68 11.61 0.00 3.30 0.00 3.19 0.00 0.00 0.00 0.00 92 ER10d ExonRegion 0 4.23 2.03 0.00 2.04 5.35 0.92 1.32 0.00 0.00 2.29 0.00 0.00 0.00 2.44 5.80 0.00 3.30 0.00 3.19 0.00 0.00 0.00 0.00