Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MIR137 Gene 0 2.40 46.35 4.46 11.35 33.01 48.04 61.48 12.41 29.92 15.08 0.00 0.31 0.58 0.62 0.88 0.13 0.07 37.70 16.51 105.96 0.52 0.31 0.69 2 424528 Transcript 0 1.09 24.31 2.10 3.64 16.00 19.63 39.00 3.81 8.87 5.09 0.00 0.05 0.10 0.10 0.15 0.02 0.53 20.58 11.38 43.78 0.09 0.05 0.15 3 ER1a ExonRegion 0 0.07 8.19 1.28 1.63 6.51 18.61 35.07 2.33 4.59 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.54 16.84 11.00 23.04 0.00 0.00 0.00 4 E1a_E2a KnownJunction 0 2.89 0.00 6.21 1.80 3.14 2.84 10.82 0.00 4.92 4.57 0.00 0.00 0.00 0.00 0.00 0.00 3.83 18.57 13.93 8.37 0.00 0.00 0.00 5 ER2a ExonRegion 0 0.83 1.96 2.45 0.80 5.25 14.13 33.63 2.11 5.61 3.24 0.00 0.00 0.00 0.00 0.00 0.00 0.42 19.85 8.36 32.81 0.00 0.00 0.00 6 E2a_E3a KnownJunction 0 0.00 9.41 0.00 2.06 12.82 24.70 113.76 1.93 1.62 5.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31.17 17.41 37.07 0.00 0.00 0.00 7 ER3a ExonRegion 0 0.00 4.96 0.74 0.69 3.58 6.53 10.45 0.80 2.26 1.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.23 6.70 13.67 0.00 0.00 0.39 8 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.94 0.00 3.20 0.00 0.00 0.00 9 I3 Intron 0 0.75 16.57 1.66 2.82 11.51 10.55 32.18 6.25 12.74 5.73 0.00 0.03 0.06 0.17 0.09 0.02 0.10 10.86 4.38 59.72 0.05 0.07 0.16 10 I3_AR1 ActiveIntronRegion 0 1.62 26.10 3.63 2.16 30.50 31.86 34.02 10.56 12.07 9.96 0.00 0.00 0.00 0.70 1.04 0.00 0.00 8.72 4.89 108.02 0.00 0.00 1.39 11 I3_SR1 SilentIntronRegion 0 1.88 56.23 5.28 4.30 32.72 31.81 52.06 13.13 22.58 11.82 0.00 0.00 0.00 1.04 0.00 0.00 0.98 11.72 4.72 90.21 0.00 0.00 0.49 12 I3_AR2 ActiveIntronRegion 0 1.17 30.94 4.21 2.31 37.02 42.42 42.90 9.10 15.53 17.66 0.00 0.00 0.00 0.22 0.59 0.00 0.00 27.74 11.42 89.10 0.00 0.00 0.00 13 I3_AR3 ActiveIntronRegion 0 0.67 22.27 2.49 2.97 38.34 37.88 46.24 5.48 18.75 16.48 0.00 0.00 0.00 0.63 0.00 0.00 0.00 8.56 4.23 71.03 0.00 0.00 0.30 14 I3_SR2 SilentIntronRegion 0 0.50 14.75 1.16 1.64 10.31 5.82 24.69 5.69 11.40 6.58 0.00 0.09 0.06 0.23 0.08 0.00 0.04 8.56 3.44 46.77 0.02 0.07 0.08 15 I3_AR4 ActiveIntronRegion 0 0.45 13.85 2.33 2.78 8.80 5.02 33.55 7.15 10.18 5.02 0.00 0.00 0.33 0.00 0.00 0.00 0.00 31.62 2.58 55.53 0.00 0.00 0.00 16 I3_SR3 SilentIntronRegion 0 1.02 13.06 3.32 2.55 10.80 11.87 34.33 4.46 9.19 3.36 0.00 0.00 0.00 0.10 0.00 0.00 0.00 14.07 2.37 51.20 0.00 0.00 0.21 17 I3_AR5 ActiveIntronRegion 0 2.04 12.46 6.88 4.99 15.47 11.72 37.42 5.37 12.66 7.32 0.00 0.00 0.00 0.00 0.00 0.00 0.63 8.92 1.55 48.35 0.00 0.40 0.00 18 I3_SR4 SilentIntronRegion 0 0.51 16.93 1.14 2.06 9.65 11.60 32.49 3.26 6.36 5.16 0.00 0.00 0.00 0.00 0.18 0.00 0.00 4.11 3.13 37.60 0.00 0.00 0.00 19 I3_AR6 ActiveIntronRegion 0 1.07 18.73 1.40 1.65 5.07 5.07 29.03 2.28 3.69 2.01 0.00 0.00 0.00 0.34 0.26 0.00 0.00 4.59 1.61 29.77 0.00 0.00 0.57 20 I3_SR5 SilentIntronRegion 0 0.67 10.98 1.55 3.02 9.49 10.97 35.89 6.03 11.66 4.12 0.00 0.00 0.04 0.11 0.08 0.00 0.14 10.01 3.72 57.76 0.07 0.02 0.18 21 I3_AR7 ActiveIntronRegion 0 0.88 9.38 1.06 4.06 6.48 4.61 25.26 5.70 9.33 3.87 0.00 0.00 0.00 0.19 0.00 0.00 0.00 8.00 9.82 82.16 0.00 0.29 0.00 22 I3_SR6 SilentIntronRegion 0 0.00 18.17 0.07 1.49 7.34 3.39 16.91 3.09 13.47 5.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.85 6.17 74.31 0.00 0.00 0.00 23 I3_SR7 SilentIntronRegion 0 1.38 38.36 1.74 5.19 16.12 15.65 36.28 9.16 22.15 7.49 0.00 0.00 0.17 0.12 0.14 0.13 0.11 17.48 9.32 100.16 0.15 0.21 0.23 24 E4_Aa NovelBoundary 0 6.96 247.13 8.69 21.61 45.33 46.62 122.73 25.30 47.77 34.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 80.46 14.40 223.07 0.00 0.00 0.00 25 ER4a ExonRegion 0 2.54 121.51 2.13 4.35 65.19 29.25 61.14 6.04 15.49 3.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32.02 20.12 101.45 0.00 0.00 0.00 26 E4_Da NovelBoundary 0 6.22 211.94 14.72 33.46 39.98 27.03 81.08 23.08 67.27 13.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 81.91 7.53 186.96 0.00 0.00 0.00 27 E4a_E5a KnownJunction 0 0.00 11.64 0.00 4.89 3.14 14.65 6.18 3.29 2.40 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.97 4.80 28.19 0.00 0.00 0.00 28 I4 Intron 0 3.48 85.75 6.81 13.51 47.83 42.40 83.49 18.20 50.15 16.94 0.00 0.00 0.00 0.20 0.45 0.00 0.10 36.67 15.96 133.50 0.24 0.26 0.23 29 I4_SR1 SilentIntronRegion 0 3.71 98.09 7.67 14.31 52.23 39.92 83.84 18.35 52.82 18.27 0.00 0.00 0.00 0.23 0.36 0.00 0.13 30.85 14.58 135.32 0.26 0.21 0.18 30 I4_AR1 ActiveIntronRegion 0 3.27 39.69 4.03 10.23 31.23 54.26 85.43 19.74 43.58 12.30 0.00 0.00 0.00 0.13 0.72 0.00 0.00 65.21 16.66 140.13 0.24 0.25 0.00 31 I4_AR2 ActiveIntronRegion 0 2.08 25.92 1.31 15.74 40.82 72.02 119.54 10.65 26.14 10.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.75 21.20 97.29 0.00 1.74 0.00 32 I4_AR3 ActiveIntronRegion 0 1.00 38.93 2.49 9.62 25.92 43.25 68.26 20.67 42.54 11.80 0.00 0.00 0.00 0.00 1.57 0.00 0.00 71.64 41.73 106.60 0.00 0.00 2.89 33 I4_AR4 ActiveIntronRegion 0 2.12 46.34 4.90 12.56 10.51 37.46 47.95 18.64 46.05 12.53 0.00 0.00 0.00 0.00 2.90 0.00 0.00 82.49 54.83 131.61 0.00 0.00 2.94 34 I4_SR2 SilentIntronRegion 0 0.10 34.07 2.45 7.57 28.56 29.88 47.19 4.48 20.00 9.14 0.00 0.00 0.00 0.00 0.90 0.00 0.00 31.81 24.33 73.56 0.00 1.74 0.87 35 E5_Aa NovelBoundary 0 6.82 26.57 2.99 3.26 18.42 18.51 21.82 12.86 28.53 6.29 0.00 0.00 0.00 2.77 0.00 8.03 4.30 22.09 8.75 48.39 2.90 0.00 7.94 36 ER5a ExonRegion 0 3.44 61.15 6.11 16.52 44.34 65.97 79.91 17.82 42.92 21.92 0.00 0.46 0.88 0.94 1.34 0.19 0.00 49.59 20.12 146.19 0.79 0.47 0.95 37 IG20 Intergenic 0 1.35 24.78 2.00 5.53 21.29 30.79 29.27 8.35 31.03 8.73 0.00 0.01 0.04 0.06 0.10 0.02 0.06 17.82 6.18 70.54 0.14 0.29 0.28 38 IG20_SR13 SilentIntergenicRegion 0 2.54 48.77 4.66 11.92 43.06 48.85 64.92 14.84 42.13 16.19 0.00 0.05 0.13 0.09 0.12 0.08 0.11 39.47 13.82 114.86 0.31 0.40 0.65 39 IG20_AR16 ActiveIntergenicRegion 0 0.36 22.36 0.62 6.73 23.43 45.03 46.66 8.98 29.06 7.33 0.00 0.00 0.00 0.00 0.23 0.00 0.00 19.32 3.05 124.58 0.47 0.82 0.33 40 IG20_AR15 ActiveIntergenicRegion 0 0.00 10.17 0.00 1.36 5.35 0.00 3.97 0.00 27.17 9.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 29.79 0.00 0.00 0.00 41 IG20_SR12 SilentIntergenicRegion 0 1.06 16.48 1.39 3.61 12.85 29.66 34.70 3.55 16.01 6.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.84 1.59 88.74 0.00 0.00 2.94 42 IG20_AR14 ActiveIntergenicRegion 0 1.10 15.81 1.42 4.21 17.02 28.55 37.47 9.80 18.70 4.43 0.00 0.00 0.00 0.32 0.40 0.00 0.00 19.63 3.32 98.57 0.00 1.08 0.19 43 IG20_SR11 SilentIntergenicRegion 0 2.95 22.90 2.26 6.40 19.62 31.47 47.84 9.22 22.20 11.53 0.00 0.00 0.07 0.26 0.09 0.00 0.12 41.55 8.99 108.34 0.28 0.77 0.43 44 IG20_AR13 ActiveIntergenicRegion 0 5.14 34.76 5.90 12.24 35.73 34.34 52.12 18.08 22.63 15.11 0.00 0.00 0.00 0.14 0.84 0.00 0.12 31.33 10.73 112.14 0.00 1.01 0.11 45 IG20_SR10 SilentIntergenicRegion 0 0.25 7.00 0.78 1.26 3.30 5.67 9.84 2.40 7.09 2.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.38 2.80 44.84 0.00 0.05 0.14 46 IG20_AR11 ActiveIntergenicRegion 0 0.00 15.31 0.00 2.73 6.14 8.31 9.89 1.73 3.63 2.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.43 0.00 32.79 0.00 0.00 0.00 47 IG20_AR10 ActiveIntergenicRegion 0 0.00 13.62 0.00 3.43 7.95 7.23 9.23 2.07 5.56 3.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.84 0.00 57.14 0.00 0.00 0.00 48 IG20_AR9 ActiveIntergenicRegion 0 0.00 7.16 0.00 4.06 5.53 7.49 13.31 2.18 8.15 3.89 0.00 0.00 0.00 0.23 0.00 0.00 0.00 17.36 3.09 51.33 0.00 0.00 0.00 49 IG20_SR9 SilentIntergenicRegion 0 0.83 19.29 0.14 1.96 7.65 11.21 11.33 3.78 13.97 3.56 0.00 0.00 0.00 0.00 0.08 0.00 0.13 5.58 2.54 57.27 0.04 0.29 0.17 50 IG20_AR8 ActiveIntergenicRegion 0 1.63 17.43 0.84 6.09 14.71 18.33 13.12 6.68 35.97 8.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.76 0.98 69.10 0.00 0.00 0.00 51 IG20_SR8 SilentIntergenicRegion 0 1.88 52.26 2.57 7.39 31.44 26.45 18.51 15.48 46.68 13.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.77 2.83 68.23 0.00 0.08 0.11 52 IG20_AR7 ActiveIntergenicRegion 0 0.67 24.91 2.74 5.59 19.03 25.74 16.98 13.10 58.75 11.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.04 2.28 86.21 0.00 0.00 0.93 53 IG20_SR7 SilentIntergenicRegion 0 0.23 21.87 0.93 3.09 9.11 11.25 14.09 9.91 43.50 10.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.90 1.26 49.28 0.00 0.00 0.00 54 IG20_AR6 ActiveIntergenicRegion 0 0.61 15.16 1.19 3.23 11.23 16.26 11.28 12.37 47.62 11.98 0.00 0.00 0.00 0.00 0.71 0.00 0.00 8.11 5.89 63.94 0.00 0.00 0.00 55 IG20_SR6 SilentIntergenicRegion 0 1.39 42.02 2.31 5.15 13.50 16.13 11.75 9.97 43.91 10.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.02 6.88 53.61 0.19 0.18 0.51 56 IG20_AR5 ActiveIntergenicRegion 0 0.38 24.07 2.13 3.00 13.35 25.26 11.58 6.73 38.36 8.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.23 3.45 53.70 0.00 0.38 0.00 57 IG20_SR5 SilentIntergenicRegion 0 0.62 10.46 0.44 1.24 7.06 21.71 10.62 3.29 19.69 3.59 0.00 0.00 0.00 0.00 0.03 0.00 0.14 9.52 3.22 45.49 0.09 0.00 0.12 58 IG20_AR4 ActiveIntergenicRegion 0 0.95 24.96 0.27 9.27 36.00 110.52 37.26 9.14 90.43 9.12 0.00 0.00 0.58 0.00 0.00 0.00 0.00 25.27 13.21 83.50 0.66 0.93 0.88 59 IG20_SR4 SilentIntergenicRegion 0 0.00 8.94 0.24 3.75 25.20 58.43 18.32 6.03 61.47 7.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.41 8.10 46.59 0.00 0.27 0.00 60 IG20_AR3 ActiveIntergenicRegion 0 0.40 5.93 0.55 2.70 20.49 55.34 19.15 3.68 42.91 5.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.99 3.37 51.02 0.00 0.00 0.00 61 IG20_SR3 SilentIntergenicRegion 0 0.35 14.39 0.94 3.47 24.24 46.47 16.43 3.94 38.83 5.29 0.00 0.00 0.00 0.00 0.02 0.00 0.00 4.99 3.88 33.10 0.13 0.17 0.03 62 IG20_AR2 ActiveIntergenicRegion 0 0.00 2.51 0.70 0.38 10.59 16.13 3.64 2.28 15.40 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.76 0.75 5.44 0.00 0.00 0.00