Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-31F15.2 Gene 0 17.55 33.54 28.68 46.85 19.51 23.40 24.91 15.19 11.40 19.18 27.64 31.44 31.17 28.97 33.26 33.52 33.05 36.04 22.72 30.30 11.64 8.07 18.74 2 416193 Transcript 0 5.76 1.72 1.83 1.70 3.27 1.86 2.06 0.87 0.00 1.70 2.11 1.87 2.62 3.82 5.05 0.64 2.37 1.71 3.28 4.41 0.00 1.72 0.60 3 435800 Transcript 1 16.08 25.56 20.55 36.31 13.77 10.90 19.33 9.28 9.43 10.66 5.12 28.35 45.92 10.65 16.37 27.80 12.64 21.15 11.83 15.82 11.23 3.05 18.44 4 428411 Transcript 0 19.20 29.65 27.53 39.35 17.51 26.20 20.69 11.51 9.30 14.70 25.97 43.34 31.33 26.60 36.62 29.44 27.09 27.56 25.17 24.82 7.00 5.90 10.32 5 420168 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 0.56 0.00 0.16 0.64 0.00 0.00 0.18 0.00 0.00 2.06 0.00 0.00 0.00 3.57 0.00 0.00 0.44 0.86 2.97 1.42 0.00 0.00 0.20 7 E1_Ac KnownBoundary 0 25.49 16.31 33.44 21.98 4.33 19.14 12.14 6.16 6.08 18.99 33.27 0.00 0.00 31.79 24.48 39.56 14.03 49.41 17.51 32.09 8.34 2.88 8.54 8 ER1b ExonRegion 0 9.33 5.66 11.14 8.82 1.92 7.74 6.41 1.19 1.78 5.30 14.01 0.00 0.00 17.36 11.24 12.45 8.25 20.84 10.15 13.10 2.55 1.37 6.15 9 ER1c ExonRegion 1 21.99 30.61 29.10 23.05 8.21 55.14 42.28 7.76 9.99 16.52 31.91 3.08 0.00 33.09 35.01 41.11 49.57 67.11 11.66 29.82 15.84 6.67 36.09 10 E1_Ad KnownBoundary 0 23.56 28.81 22.06 16.28 14.94 50.26 44.56 13.43 10.59 20.98 32.32 0.00 0.00 22.01 13.85 41.10 58.25 67.69 17.88 14.00 16.12 8.45 28.51 11 ER1d ExonRegion 0 9.65 22.34 33.30 34.58 11.82 24.91 20.15 19.11 16.40 31.05 49.64 11.71 17.26 49.65 41.60 45.47 58.98 60.56 24.27 34.97 25.87 8.05 18.02 12 E1_Da KnownBoundary 0 7.19 12.76 18.18 9.66 0.00 5.34 4.11 2.42 6.25 6.61 19.69 6.30 6.82 7.30 0.00 3.93 9.44 35.40 8.75 5.56 5.68 6.12 0.00 13 E1a_E2a KnownJunction 0 31.71 82.49 47.90 68.39 59.34 45.26 22.61 27.27 23.90 43.19 48.80 12.15 27.43 99.01 60.94 70.67 80.60 119.55 31.25 62.38 28.42 12.12 28.60 14 ER1e ExonRegion 0 9.80 19.07 34.83 42.73 12.31 21.07 16.21 13.03 9.60 18.54 23.55 21.22 17.58 15.45 15.20 18.13 23.16 39.01 17.55 25.72 6.85 5.53 7.54 15 E1_Db NovelBoundary 0 10.67 17.50 11.97 19.71 23.94 9.77 9.76 15.36 7.55 12.71 27.27 0.00 0.00 17.07 9.64 0.00 7.11 6.05 8.09 18.02 2.53 5.08 0.00 16 E1b_E2a KnownJunction 0 16.30 16.18 13.04 24.61 7.39 29.81 16.03 5.26 5.99 4.62 20.01 31.06 6.82 22.96 45.49 31.53 24.22 15.92 30.87 15.40 5.37 0.00 4.35 17 I1 Intron 0 8.87 11.12 10.38 20.78 9.31 12.11 13.63 6.04 2.88 5.95 6.59 11.58 7.82 4.59 7.92 5.70 7.50 3.92 5.43 6.20 1.41 2.22 3.13 18 I1_SR1 SilentIntronRegion 0 8.89 11.15 10.41 20.84 9.34 12.14 13.67 6.05 2.88 5.96 6.61 11.61 7.84 4.60 7.94 5.72 7.52 3.94 5.45 6.21 1.41 2.23 3.14 19 E2_Aa NovelBoundary 0 3.19 21.11 26.02 37.76 16.98 13.06 21.60 13.51 9.26 8.22 0.00 6.30 0.00 7.30 0.00 0.00 3.93 4.23 4.61 2.43 5.37 0.00 0.00 20 ER2a ExonRegion 0 44.58 56.69 52.05 74.33 33.87 39.58 48.32 21.86 24.18 33.85 91.76 28.34 26.58 101.47 70.80 102.13 100.13 85.13 49.00 65.01 30.63 16.44 42.77 21 E2_Da NovelBoundary 0 9.56 31.24 51.57 110.97 11.12 14.76 35.02 30.31 25.23 22.32 27.53 47.57 26.30 17.48 32.88 51.78 37.12 50.32 13.27 37.90 17.54 8.39 16.39 22 E2a_E3a KnownJunction 0 7.11 0.00 2.84 2.00 3.99 0.00 0.00 0.00 0.00 1.64 4.79 0.00 0.00 2.24 4.45 0.00 0.00 2.57 3.86 0.00 0.00 2.76 0.00 23 E2a_E4a KnownJunction 0 13.26 6.38 4.41 1.66 8.40 8.40 8.17 8.63 1.71 10.91 46.54 12.60 13.64 42.73 29.30 24.52 20.20 8.71 9.32 10.80 3.03 3.12 0.00 24 E2a_E5a KnownJunction 0 0.00 6.12 6.53 3.76 3.90 2.90 2.21 2.46 0.00 0.00 5.05 0.00 13.15 14.66 15.20 27.26 3.55 11.52 0.00 0.00 3.15 0.00 0.00 25 I2 Intron 0 16.88 47.52 42.33 110.72 25.80 20.75 26.27 15.29 19.12 23.46 13.62 26.26 35.00 17.04 30.07 30.87 25.71 22.18 18.31 43.80 2.86 12.75 15.25 26 I2_AR1 ActiveIntronRegion 0 17.52 49.31 43.93 114.89 26.78 21.53 27.26 15.86 19.84 24.34 14.14 27.23 36.32 17.68 31.20 32.03 26.68 23.02 19.00 45.44 2.97 13.23 15.82 27 E3_Aa NovelBoundary 1 6.74 26.84 5.06 1.76 3.23 4.83 10.42 4.19 3.30 4.35 2.16 13.95 25.49 7.42 42.28 14.53 0.00 4.23 8.28 15.08 0.00 8.70 4.18 28 ER3a ExonRegion 0 9.60 5.15 2.50 2.46 5.83 5.57 6.02 2.60 0.00 1.39 1.55 5.62 7.85 5.66 10.71 1.91 6.67 1.68 3.00 11.82 0.00 2.39 1.60 29 E3_Da NovelBoundary 1 12.89 32.95 18.48 21.98 19.35 7.78 8.04 16.55 13.51 8.60 2.68 12.15 78.24 7.12 5.07 7.95 4.30 0.00 4.80 8.63 5.81 5.88 8.02 30 I3 Intron 1 23.14 43.91 23.91 49.21 23.00 20.88 25.19 15.41 10.96 16.63 12.24 22.08 43.28 13.98 33.67 40.79 27.22 39.01 26.90 34.07 10.91 9.85 27.17 31 I3_SR1 SilentIntronRegion 0 23.20 44.02 23.97 49.33 23.06 20.93 25.25 15.45 10.99 16.67 12.27 22.14 43.39 14.01 33.75 40.89 27.28 39.10 26.97 34.15 10.94 9.87 27.23 32 E4_Aa NovelBoundary 1 15.04 43.87 8.22 23.91 10.95 27.82 25.53 3.74 4.89 13.65 6.58 18.31 14.93 9.36 42.15 25.12 19.64 14.38 8.00 27.68 5.00 11.27 22.02 33 ER4a ExonRegion 0 33.27 68.36 30.68 85.46 53.18 41.68 59.71 33.90 19.60 29.92 55.37 77.80 64.29 57.67 67.30 58.18 46.54 28.14 35.51 54.42 10.89 16.64 25.16 34 E4_Da KnownBoundary 0 115.35 78.54 74.98 153.39 182.00 106.59 129.88 49.00 29.34 68.74 71.12 112.24 147.23 55.09 134.62 79.21 83.40 35.24 49.79 105.34 11.37 17.45 44.13 35 ER4b ExonRegion 1 31.50 53.71 34.72 50.73 32.84 27.71 29.82 16.25 12.32 20.92 34.35 77.74 69.60 41.39 49.17 38.65 33.91 27.76 27.10 33.32 8.77 12.18 19.06 36 E4_Db NovelBoundary 0 20.60 37.03 13.25 14.95 46.94 16.07 17.53 1.81 8.68 4.70 16.90 5.70 13.15 40.79 48.83 29.48 3.74 17.00 25.88 25.82 19.09 2.33 26.80 37 E4b_E6a NovelJunction 0 70.16 50.06 22.74 48.88 49.75 9.14 27.38 33.27 23.32 38.22 2.53 23.56 25.00 6.89 14.83 25.55 12.06 22.01 24.00 8.18 0.00 2.51 10.67 38 I4 Intron 0 18.95 36.46 19.85 39.11 21.07 18.48 19.70 12.01 11.89 14.80 12.25 25.74 33.12 13.58 24.00 30.60 22.65 26.53 19.01 30.03 8.32 8.61 18.38 39 I4_SR1 SilentIntronRegion 0 35.37 67.90 29.97 55.64 41.82 29.30 30.09 21.98 16.90 24.59 31.99 50.60 47.58 35.49 44.87 47.47 34.17 36.08 25.73 40.68 11.02 15.08 22.49 40 I4_AR1 ActiveIntronRegion 0 35.92 53.19 31.86 65.51 32.91 32.54 32.30 23.45 23.43 26.22 30.62 72.15 63.29 21.01 41.73 35.39 28.30 10.30 12.22 42.63 3.78 18.56 20.52 41 I4_SR2 SilentIntronRegion 0 13.66 27.13 16.51 33.31 14.87 14.84 16.25 8.74 9.94 11.57 5.99 16.66 27.67 7.30 17.48 25.82 19.26 24.79 17.55 26.52 7.83 6.36 17.16 42 E5_Aa NovelBoundary 0 18.23 46.90 8.37 39.89 22.07 5.11 31.09 10.35 15.10 12.54 6.48 18.76 12.66 4.59 24.35 23.50 34.50 41.33 32.00 29.66 15.38 3.12 63.08 43 ER5a ExonRegion 0 11.61 26.24 24.04 45.61 8.88 18.25 16.42 11.25 9.27 14.42 7.94 10.99 16.21 14.85 25.99 40.24 28.18 37.43 22.71 22.33 14.75 3.54 28.89 44 E5_Da NovelBoundary 1 481.86 393.02 250.32 250.22 279.80 243.50 541.74 263.65 287.47 209.55 104.55 72.32 193.01 53.92 127.57 215.50 311.55 380.75 318.97 440.71 136.34 145.18 346.40 45 E5a_E6a KnownJunction 1 40.23 40.52 35.81 52.74 29.54 9.82 38.29 14.62 21.85 19.39 2.37 89.13 129.70 7.12 5.07 32.04 3.93 14.47 7.72 19.94 20.51 2.14 26.80 46 I5 Intron 0 0.66 13.91 5.68 9.47 8.32 5.70 9.88 0.80 2.29 3.19 1.20 13.86 13.56 1.25 6.26 3.70 5.13 5.13 10.90 8.60 2.74 1.94 8.22 47 I5_SR1 SilentIntronRegion 0 0.66 13.91 5.68 9.47 8.32 5.70 9.88 0.80 2.29 3.19 1.20 13.86 13.56 1.25 6.26 3.70 5.13 5.13 10.90 8.60 2.74 1.94 8.22 48 E6_Aa NovelBoundary 0 5308.27 5282.15 5975.28 6314.78 5245.16 3732.40 5533.45 6266.67 5774.91 4918.29 1964.34 1664.04 1912.21 1178.06 1814.21 5290.58 3819.82 8305.52 4029.48 5662.10 2785.60 2078.02 4565.48 49 ER6a ExonRegion 1 12.46 29.35 15.83 43.12 12.77 12.63 20.40 8.79 6.60 8.81 5.11 13.28 24.62 5.96 19.21 11.67 14.88 21.16 16.91 21.00 6.51 6.53 18.05 50 IG46 Intergenic 0 12.77 20.86 21.87 44.68 13.98 9.58 16.98 7.45 6.32 9.26 4.14 15.00 26.79 6.98 16.99 22.29 19.92 23.61 20.82 26.09 8.07 5.30 20.78 51 IG46_SR1 SilentIntergenicRegion 0 12.78 20.87 21.88 44.70 13.99 9.58 16.98 7.45 6.32 9.26 4.14 15.01 26.80 6.99 17.00 22.30 19.93 23.62 20.83 26.10 8.07 5.30 20.79