Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-426L16.1 Gene 0 14.15 17.28 23.75 23.57 7.04 29.45 10.96 14.40 12.25 12.72 1.57 3.15 3.11 2.51 3.42 2.07 2.50 16.54 10.34 15.29 1.42 1.57 2.46 2 401018 Transcript 0 0.63 3.07 3.69 4.50 0.47 9.22 2.54 1.31 0.75 1.74 0.11 0.21 0.23 0.55 1.10 0.00 0.00 2.23 1.11 2.34 0.05 0.00 0.84 3 433505 Transcript 0 1.89 0.00 0.61 0.68 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 4 449572 Transcript 0 0.00 1.61 0.78 8.29 0.00 0.00 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 ER1a ExonRegion 0 1.95 20.52 20.56 11.12 2.14 30.91 6.76 3.33 2.15 5.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.23 8.43 15.71 0.41 0.00 0.00 6 E1_Ab KnownBoundary 0 0.00 0.00 1.60 0.00 4.07 5.62 0.00 2.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1b ExonRegion 0 1.12 0.40 0.78 1.36 0.89 21.19 0.37 0.05 0.82 2.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.75 3.72 5.56 0.00 0.00 0.00 8 E1_Ac KnownBoundary 0 6.96 0.00 1.57 1.96 3.57 47.47 2.16 0.00 1.56 6.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.67 8.56 12.02 0.00 0.00 0.00 9 ER1c ExonRegion 0 8.87 15.57 6.31 15.20 2.43 63.15 8.73 7.04 0.65 9.71 0.00 0.00 0.05 0.00 0.03 0.00 0.00 10.28 11.78 7.84 0.00 0.00 0.00 10 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 11 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E1a_E5a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 3.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 0.00 0.00 0.00 0.00 13 I1 Intron 0 1.18 3.97 16.45 7.55 0.99 11.92 0.86 2.39 0.68 3.97 0.36 0.00 0.00 0.00 0.00 0.00 0.00 8.70 4.14 7.31 0.00 0.00 0.00 14 I1_SR1 SilentIntronRegion 0 1.18 3.97 16.48 7.56 1.00 11.95 0.86 2.40 0.69 3.98 0.36 0.00 0.00 0.00 0.00 0.00 0.00 8.72 4.15 7.33 0.00 0.00 0.00 15 E2_Aa NovelBoundary 0 237.75 187.40 128.56 78.18 167.91 87.39 200.54 115.09 124.33 76.05 69.70 76.52 51.46 16.72 146.36 206.53 204.77 114.04 167.63 172.26 93.96 92.46 209.65 16 ER2a ExonRegion 0 1.11 1.19 0.08 0.06 1.43 0.00 0.00 0.00 0.00 0.00 1.02 1.87 2.03 4.82 9.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.63 17 E2_Da NovelBoundary 0 105.87 133.00 408.21 317.18 78.44 112.38 165.43 321.73 478.76 284.01 34.54 7.05 23.54 16.54 68.11 180.38 86.58 362.59 44.99 92.87 76.54 73.17 81.35 18 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 I2 Intron 0 1.99 11.49 17.32 15.36 1.33 6.96 2.36 4.25 0.67 3.58 0.00 0.09 0.10 0.00 0.05 0.00 0.00 3.80 3.42 9.47 0.00 0.00 0.00 20 I2_SR1 SilentIntronRegion 0 1.99 11.49 17.32 15.36 1.33 6.96 2.36 4.25 0.67 3.58 0.00 0.09 0.10 0.00 0.05 0.00 0.00 3.80 3.42 9.47 0.00 0.00 0.00 21 ER3a ExonRegion 0 3.48 11.41 9.54 12.66 4.37 13.03 7.26 0.06 0.00 1.48 0.00 1.68 4.24 4.35 15.82 0.00 0.00 2.03 6.99 5.99 0.00 0.00 3.22 22 E3_Da NovelBoundary 0 124.76 101.69 105.14 162.18 57.64 34.47 113.01 114.76 87.38 76.31 22.11 25.21 106.49 29.31 45.99 64.68 54.70 149.69 52.52 95.88 29.90 27.00 55.91 23 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E3a_E5a KnownJunction 0 0.00 3.22 1.57 16.58 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER4a ExonRegion 0 0.00 0.00 0.14 0.00 0.00 0.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 E4_Da NovelBoundary 0 45.19 17.69 19.93 24.24 31.15 0.00 26.54 20.21 20.31 16.28 5.16 13.20 32.14 2.47 5.93 8.37 0.00 7.05 4.05 25.95 2.78 8.76 11.61 27 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 ER5a ExonRegion 0 3.60 8.03 14.05 30.77 11.09 21.90 10.07 14.90 11.59 23.51 7.39 1.38 2.73 2.74 1.58 2.84 2.15 10.42 13.20 13.47 2.11 1.99 3.76 29 E5_Da NovelBoundary 0 0.00 3.35 14.10 13.48 4.33 2.33 8.79 13.97 10.56 7.98 4.32 0.00 6.66 0.00 0.00 6.66 3.55 7.25 0.00 3.26 2.53 0.00 6.66 30 E5a_E6a KnownJunction 0 5.78 8.55 9.58 22.54 0.00 32.71 6.14 11.50 5.38 4.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.07 0.00 0.00 0.00 0.00 0.00 31 E6_Aa NovelBoundary 0 15.93 47.69 57.98 58.60 30.56 31.29 35.20 88.35 102.81 74.09 20.37 6.15 0.00 13.01 9.89 22.64 50.68 72.46 37.37 69.22 19.95 5.02 10.84 32 ER6a ExonRegion 0 0.91 9.97 6.50 19.04 2.33 45.56 6.66 6.98 2.98 2.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.42 2.19 0.48 0.00 0.00 0.23 33 E6_Da NovelBoundary 0 13.78 9.21 35.01 34.09 4.24 10.73 5.74 70.98 78.27 59.58 4.63 6.00 13.31 5.36 0.00 24.78 4.21 48.09 22.12 19.05 11.18 2.88 4.27 34 E6a_E7a KnownJunction 0 0.00 3.35 10.29 14.32 0.00 26.29 7.46 7.15 3.36 4.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 3.26 0.00 0.00 0.00 35 E6a_E7b KnownJunction 0 3.41 2.63 15.46 15.52 3.74 5.11 0.00 6.24 3.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 8.85 0.00 0.00 0.00 0.00 36 E7_Aa NovelBoundary 0 141.51 64.73 84.50 75.95 77.25 95.12 163.89 98.00 110.42 85.29 36.27 261.09 275.96 180.35 41.29 91.51 86.40 38.84 81.88 101.24 57.14 25.23 85.45 37 ER7a ExonRegion 0 2.65 2.54 2.14 14.99 0.67 25.67 8.61 1.30 1.24 5.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.31 1.59 2.13 0.00 0.00 2.94 38 ER7b ExonRegion 0 86.98 31.62 83.90 89.16 32.01 37.81 37.38 77.47 72.26 52.75 6.35 15.10 18.72 11.64 14.38 13.41 16.33 62.00 28.19 39.71 6.80 10.27 12.52 39 E7_Da KnownBoundary 0 1128.35 224.24 243.99 326.83 234.47 253.09 240.51 289.49 270.05 230.10 33.69 33.46 7.47 7.83 16.32 118.60 112.11 260.00 115.39 145.92 79.57 30.98 90.06 40 ER7c ExonRegion 0 4.94 13.92 8.41 17.07 2.51 18.91 10.64 4.17 3.14 1.89 0.00 12.39 0.00 3.02 0.00 0.00 1.45 2.96 5.03 10.84 1.94 0.00 0.00 41 ER7d ExonRegion 0 0.00 0.00 1.23 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.25 0.00 0.00 0.00 0.46 0.00 0.00 0.00 0.00 0.00