Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C1orf183 Gene 0 12.20 10.07 27.72 31.23 24.23 16.54 18.76 20.77 11.80 30.45 1.17 21.68 10.12 36.12 33.65 43.02 30.75 41.13 35.18 27.98 43.30 24.63 12.59 2 444059 Transcript 0 0.00 0.00 0.00 0.00 0.70 0.48 0.35 0.00 0.00 0.00 0.00 3.04 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 4.36 0.00 0.05 3 428322 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 357260 Transcript 0 14.51 10.94 32.34 36.47 27.89 15.83 19.42 24.45 10.86 29.48 0.70 24.68 9.44 27.90 28.51 37.84 28.49 39.21 32.68 28.77 37.79 24.26 10.21 5 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 1.41 0.96 0.70 0.00 0.00 0.00 0.00 0.67 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.00 2.98 0.00 0.09 6 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.75 0.00 0.00 7 Ix_SR1 SilentIntronRegion 0 2.49 13.38 9.87 18.14 15.40 5.60 4.36 9.08 4.33 12.85 0.68 2.99 1.36 0.45 0.00 0.35 0.78 4.00 4.12 9.00 0.78 0.00 0.00 8 Ix Intron 0 2.79 13.61 14.03 20.82 13.86 12.35 11.41 12.14 9.56 19.26 0.13 2.45 0.31 0.39 0.56 0.69 0.54 36.56 16.50 29.94 2.03 1.29 1.05 9 Ix_SR4 SilentIntronRegion 0 3.16 15.23 16.20 22.97 15.30 13.95 12.71 13.41 10.24 20.09 0.17 2.94 0.20 0.39 0.37 0.85 0.41 35.78 18.05 29.55 1.75 1.19 0.97 10 Ix_AR7 ActiveIntronRegion 0 2.12 9.88 9.28 17.33 10.70 29.60 16.83 13.33 6.18 15.89 0.00 0.00 0.00 0.00 2.90 0.00 0.00 34.58 22.30 47.11 2.20 2.08 2.94 11 Ix_AR6 ActiveIntronRegion 0 2.12 11.46 8.02 18.21 14.59 22.51 17.21 12.88 5.05 17.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 37.96 21.72 40.81 2.20 0.57 2.94 12 Ix_SR3 SilentIntronRegion 0 2.12 9.83 7.35 18.17 12.93 18.95 13.24 8.64 3.50 17.59 0.00 0.00 0.00 0.00 2.90 0.00 0.00 47.73 21.24 28.01 2.20 0.00 2.94 13 Ix_AR5 ActiveIntronRegion 0 2.12 8.81 6.74 20.67 11.59 18.34 12.58 8.64 1.85 17.20 0.00 0.00 0.00 0.00 2.90 0.00 0.00 48.66 15.93 19.86 2.20 0.00 1.96 14 Ix_AR4 ActiveIntronRegion 0 0.00 8.64 7.56 19.99 12.49 15.28 8.39 7.35 5.56 18.73 0.00 0.00 0.00 0.00 0.73 0.00 0.00 48.50 13.54 18.44 1.29 0.00 0.00 15 Ix_SR2 SilentIntronRegion 0 0.00 10.17 8.23 19.28 12.61 17.29 7.19 3.46 4.94 17.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45.93 13.20 20.36 0.00 0.00 0.00 16 Ix_AR3 ActiveIntronRegion 0 0.00 7.69 6.77 21.51 11.17 11.32 5.01 5.04 5.42 16.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46.11 8.73 20.07 0.00 0.00 0.00 17 Ix_AR2 ActiveIntronRegion 0 0.00 6.73 8.48 21.60 11.73 15.23 6.72 3.86 6.84 15.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.03 6.37 22.09 0.00 1.92 0.00 18 Ix_AR1 ActiveIntronRegion 0 1.89 9.04 8.14 13.32 8.85 6.35 7.42 7.53 7.46 18.29 0.00 0.89 0.20 0.36 1.43 0.30 1.01 40.62 10.81 35.06 3.82 1.65 1.50 19 Ix_SR1 SilentIntronRegion 0 1.28 6.87 4.40 12.66 8.76 5.27 5.84 9.02 7.80 13.39 0.00 1.04 1.78 0.57 0.73 0.00 1.22 34.56 11.90 26.34 2.06 1.92 1.09 20 ER2a ExonRegion 0 3.51 0.48 8.43 2.39 3.16 4.90 5.09 4.72 2.49 7.29 1.05 2.28 1.83 33.56 16.10 18.47 13.42 20.92 17.69 5.32 23.86 5.71 1.83 21 E2a_E3a KnownJunction 1 0.00 0.00 8.49 13.25 0.00 2.50 1.85 8.83 5.15 21.11 2.42 6.30 0.00 97.77 19.66 38.37 18.33 22.38 69.37 5.94 28.42 20.21 7.94 22 ER3a ExonRegion 0 2.01 1.32 10.07 14.06 3.12 7.85 8.70 6.88 7.74 23.76 1.57 7.11 3.25 43.62 42.06 51.58 21.87 40.27 32.98 17.11 38.64 20.05 10.40 23 E3_Da KnownBoundary 0 14.00 0.00 17.74 25.04 12.05 5.79 9.49 10.02 9.20 37.04 0.00 0.00 0.00 69.46 61.81 53.23 28.99 35.69 35.11 47.75 50.41 22.11 15.37 24 E3a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER3b ExonRegion 0 7.72 6.82 17.59 19.44 16.65 16.11 14.25 14.09 11.51 29.18 2.05 14.39 10.35 43.19 39.57 45.58 32.19 40.04 36.79 24.73 48.21 23.79 15.58 26 E3_Db KnownBoundary 0 14.30 13.29 18.72 19.28 20.29 7.89 25.53 17.13 6.60 28.34 0.00 17.71 13.47 29.14 44.38 22.81 31.23 8.66 8.47 20.45 36.20 37.17 24.58 27 ER3c ExonRegion 0 18.03 15.64 39.82 45.90 35.40 21.80 27.74 29.09 15.88 39.07 0.80 32.95 13.45 40.97 36.07 51.94 37.61 49.75 41.59 36.81 50.42 31.16 14.89 28 E3_Ab KnownBoundary 0 24.08 36.70 49.53 36.83 62.05 39.98 14.40 28.71 21.53 39.81 0.00 36.76 33.93 31.96 74.91 67.08 49.28 46.59 33.98 68.33 60.85 20.51 16.05 29 ER3d ExonRegion 1 7.39 20.41 46.56 50.38 35.22 19.57 17.72 26.59 15.94 38.58 1.19 7.08 13.64 17.07 55.23 36.58 34.81 60.94 34.98 40.89 54.41 18.79 12.12 30 E3_Dc KnownBoundary 0 6.96 21.11 74.98 82.24 32.77 18.63 23.80 35.08 13.02 51.92 2.53 6.30 13.64 23.54 54.14 43.66 27.96 86.06 33.41 58.23 37.31 18.98 11.35 31 ER3e ExonRegion 0 10.99 6.25 24.87 27.04 20.38 9.86 11.11 19.81 5.85 19.90 0.60 16.40 5.43 14.82 20.94 23.75 19.37 28.68 23.77 20.73 25.15 17.36 5.53 32 IG29_SR4 SilentIntergenicRegion 0 1.63 0.71 1.37 2.48 2.54 2.61 3.82 2.73 1.76 4.21 0.20 2.81 1.90 2.46 2.50 4.02 3.22 8.43 5.23 5.46 7.75 2.90 2.07 33 IG29_SR3 SilentIntergenicRegion 0 1.80 2.03 0.00 8.58 4.46 1.36 3.38 0.70 1.05 2.76 0.00 4.33 0.00 10.29 2.15 0.00 5.50 4.59 0.83 4.26 2.45 2.08 0.00