Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CYB561D1 Gene 0 31.93 19.65 18.03 24.05 29.20 39.05 16.34 24.95 30.86 30.60 38.22 14.35 14.89 46.58 33.76 37.57 33.80 26.77 21.71 18.14 27.29 27.57 26.52 2 393709 Transcript 0 0.43 1.64 0.00 0.00 1.31 2.77 0.08 0.29 0.07 0.03 0.77 0.00 0.00 0.81 0.63 0.44 4.19 0.61 0.40 1.64 0.18 0.43 0.00 3 496961 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 369868 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 369865 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 463113 Transcript 0 0.00 0.00 3.37 5.83 3.57 12.10 0.00 4.81 3.33 0.00 2.68 0.00 0.00 0.00 0.00 0.00 4.49 0.00 0.00 0.00 0.00 0.00 0.00 7 310611 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 420578 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 430195 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 ER1a ExonRegion 0 0.87 0.00 0.00 0.00 2.61 5.54 0.15 0.59 0.14 0.05 1.54 0.00 0.00 1.62 1.25 0.88 0.15 1.22 0.80 3.29 0.35 0.85 0.00 11 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 4.33 8.69 0.00 0.00 0.00 0.00 2.58 0.00 0.00 2.35 0.00 0.00 0.00 2.11 0.00 6.01 0.00 0.00 0.00 12 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 13 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E1_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 4.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.36 0.00 2.57 0.00 0.00 0.00 0.00 0.00 15 ER1b ExonRegion 0 2.12 0.00 0.00 0.00 15.16 16.81 2.65 1.73 3.60 2.87 3.87 0.00 0.00 6.36 2.90 8.92 7.70 8.16 3.19 11.70 4.96 2.08 0.00 16 E1_Af KnownBoundary 0 12.37 12.76 3.61 1.73 47.88 18.68 14.44 0.00 11.66 6.31 13.32 0.00 0.00 24.72 8.90 37.94 23.56 25.08 22.49 20.58 26.69 8.14 19.21 17 ER1c ExonRegion 0 2.12 3.56 0.00 0.51 22.41 21.09 5.63 2.59 6.95 4.44 4.59 0.00 0.00 10.96 3.63 17.46 15.68 12.70 7.57 13.83 10.19 3.39 4.04 18 ER1d ExonRegion 0 2.12 8.13 0.00 1.36 29.43 20.17 9.27 3.46 7.41 8.03 3.87 0.00 0.00 17.87 5.80 26.75 19.81 18.48 19.11 17.02 13.22 4.17 8.81 19 ER1e ExonRegion 0 8.18 8.13 0.00 1.45 33.36 25.67 12.71 5.53 7.41 9.48 10.05 0.00 0.00 26.42 9.48 37.65 19.81 20.08 19.11 20.28 16.16 7.08 13.12 20 ER1f ExonRegion 1 20.68 9.65 0.00 3.98 23.05 26.61 12.12 8.02 9.31 13.44 18.44 0.00 0.00 37.40 18.75 45.04 14.81 20.66 18.13 14.73 16.27 11.22 30.42 21 E1_Da KnownBoundary 0 21.63 3.35 0.00 4.13 4.33 23.11 5.21 11.99 5.18 14.51 14.32 0.00 0.00 11.77 20.40 15.21 0.00 11.11 9.22 0.00 5.68 8.27 31.67 22 E1a_E4b KnownJunction 0 0.00 3.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.23 0.00 0.00 0.00 0.00 0.00 0.00 23 ER1g ExonRegion 0 4.58 1.15 2.42 3.09 1.07 3.53 1.93 3.07 10.17 12.06 11.77 1.37 1.80 6.40 7.35 3.91 8.98 4.39 5.25 4.29 14.93 4.10 4.97 24 E1b_E2a KnownJunction 0 0.00 0.00 1.83 2.06 0.00 0.00 0.00 2.55 0.00 2.82 11.48 0.00 14.45 9.89 15.95 3.67 12.44 0.00 0.00 0.00 2.41 3.00 0.00 25 E1b_E3a KnownJunction 0 0.00 0.00 0.00 3.36 0.00 0.00 0.00 0.00 6.60 3.28 19.22 0.00 0.00 19.31 13.35 7.60 0.00 0.00 18.35 6.52 16.62 5.88 0.00 26 E2_Aa NovelBoundary 0 2.96 11.71 0.00 5.79 0.00 2.21 6.14 0.00 1.68 2.69 2.16 0.00 0.00 14.66 4.45 4.02 8.60 6.72 0.00 8.18 2.29 11.08 3.33 27 ER2a ExonRegion 0 4.50 1.65 0.80 5.06 1.44 6.52 1.32 0.99 2.51 1.51 7.95 0.00 1.04 24.88 19.76 22.55 11.16 4.02 3.94 4.86 1.75 12.40 8.02 28 E2_Da KnownBoundary 0 23.12 5.72 8.57 22.67 15.45 13.97 10.16 9.41 19.62 9.43 12.58 0.00 0.00 21.43 36.22 45.97 12.16 46.47 4.80 29.79 23.35 10.65 27.15 29 E2a_E4c KnownJunction 0 0.00 0.00 3.37 5.83 3.57 12.10 0.00 4.81 3.33 0.00 2.68 0.00 0.00 0.00 0.00 0.00 4.49 0.00 0.00 0.00 0.00 0.00 0.00 30 ER2b ExonRegion 0 1.29 0.00 0.00 3.66 8.55 5.41 0.00 0.00 9.16 5.54 4.76 0.00 4.69 12.79 15.36 8.84 10.87 2.97 1.94 7.06 3.98 8.13 5.94 31 E2_Db NovelBoundary 1 3648.05 2601.12 946.74 1085.61 2393.63 2116.96 3259.83 992.18 958.38 746.74 1080.12 689.92 863.90 624.76 1337.42 4103.20 2084.62 1854.00 3100.23 3184.93 1393.39 1606.71 4293.17 32 E2b_E3a KnownJunction 0 6.52 0.00 0.00 0.00 14.77 8.40 0.00 0.00 11.83 9.64 7.16 0.00 0.00 9.36 5.32 0.00 4.68 0.00 0.00 3.26 0.00 2.57 0.00 33 E2b_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 I2 Intron 0 2.49 1.60 4.66 9.56 2.62 13.67 2.08 6.06 4.33 5.70 8.72 5.59 3.19 11.38 6.09 5.25 6.47 9.91 4.37 2.50 4.75 2.86 5.18 35 I2_SR1 SilentIntronRegion 0 2.50 1.60 4.67 9.60 2.63 13.72 2.08 6.09 4.35 5.72 8.75 5.62 3.21 11.43 6.12 5.27 6.50 9.95 4.39 2.51 4.77 2.87 5.20 36 E3_Aa NovelBoundary 0 21.93 15.85 9.85 8.62 52.80 25.78 5.92 12.82 8.71 6.85 10.37 6.30 12.82 19.07 4.45 19.57 13.56 11.48 30.49 2.94 8.46 8.82 16.90 37 ER3a ExonRegion 0 3.56 1.71 3.29 8.00 5.63 16.75 2.96 4.96 18.62 14.88 23.09 2.39 4.81 37.53 13.51 14.08 14.42 23.05 19.78 12.71 20.01 6.63 8.19 38 E3a_E4a KnownJunction 0 0.00 0.00 1.83 0.00 3.48 0.00 0.00 5.09 0.00 2.85 0.00 0.00 0.00 9.42 4.45 3.67 4.77 0.00 4.05 0.00 0.00 3.12 4.27 39 E3a_E4b KnownJunction 0 3.33 6.58 3.64 13.78 0.00 25.84 9.58 3.90 12.21 10.88 19.64 6.30 14.61 16.60 10.38 28.03 31.04 39.80 20.99 15.21 21.81 3.12 19.72 40 E4_Aa NovelBoundary 0 3.33 0.00 6.59 7.46 7.39 5.74 2.03 2.55 4.17 0.00 6.84 0.00 5.84 2.59 0.00 4.10 0.00 0.00 0.00 3.26 2.84 2.76 12.80 41 ER4a ExonRegion 0 0.11 0.05 4.87 4.19 0.34 2.09 0.08 4.21 1.95 4.03 1.61 2.44 1.68 4.79 3.24 5.03 1.65 2.65 2.00 3.22 3.39 2.22 4.18 42 E4_Ab KnownBoundary 0 0.00 0.00 9.85 7.92 0.00 15.05 0.00 2.51 4.48 4.86 4.47 0.00 8.28 4.89 0.00 11.28 4.58 7.38 4.80 2.56 2.41 0.00 0.00 43 ER4b ExonRegion 0 23.69 18.24 14.49 19.17 25.54 39.93 15.61 21.80 29.95 29.28 43.90 12.45 11.03 52.02 27.83 38.69 36.69 28.41 22.48 17.03 29.45 27.31 26.15 44 E4_Da KnownBoundary 0 73.27 36.97 10.88 10.16 22.16 37.42 14.31 25.26 27.63 42.82 15.95 13.80 26.46 14.54 27.57 22.81 11.22 0.00 3.95 20.20 8.22 17.39 7.94 45 ER4c ExonRegion 0 61.43 43.16 36.93 45.43 57.76 63.93 34.20 52.11 52.06 54.11 42.55 32.87 40.09 50.09 53.16 54.12 48.76 39.61 35.03 28.20 33.13 44.92 47.95 46 E4_Ac KnownBoundary 1 374.21 292.51 378.08 291.50 304.92 192.11 314.13 201.59 255.32 195.07 120.19 71.12 86.84 36.97 97.53 293.26 242.92 462.83 206.59 284.37 202.20 93.44 351.44 47 ER4d ExonRegion 0 56.92 15.52 26.63 40.60 35.41 35.82 12.22 27.88 32.96 31.46 34.12 14.10 14.65 48.45 54.32 39.21 26.78 23.64 17.26 23.50 28.53 29.92 23.92 48 E4_Db KnownBoundary 0 48.90 9.41 23.03 47.45 37.35 36.85 14.04 28.55 31.45 25.52 32.43 17.56 43.34 61.22 94.94 36.14 26.83 17.66 11.77 20.90 20.70 23.94 23.73 49 ER4e ExonRegion 1 36.84 8.61 13.92 17.21 15.64 16.01 6.52 15.10 16.34 15.67 17.15 7.08 12.20 21.34 46.21 14.24 15.08 10.11 10.24 8.71 12.09 11.97 6.23 50 ER4f ExonRegion 0 2.72 2.61 0.00 0.97 0.00 1.05 0.00 0.00 0.00 0.98 0.55 0.00 0.00 0.70 0.41 0.00 0.00 1.06 0.00 0.00 0.00 0.00 0.00