Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DENND2D Gene 0 212.19 0.85 1.62 12.23 87.47 14.23 24.74 40.28 14.98 5.31 184.23 141.16 124.32 245.70 121.00 143.91 112.61 0.70 0.77 0.49 3.38 2.31 2.63 2 473822 Transcript 0 2.14 0.00 0.00 0.00 2.04 0.11 0.09 0.01 0.00 0.01 6.71 9.65 0.42 13.79 4.98 8.85 11.48 0.00 0.00 0.00 0.02 0.00 0.00 3 369752 Transcript 0 0.00 0.00 0.00 2.06 4.33 0.00 2.25 0.00 0.00 0.00 55.65 12.15 13.64 84.53 52.41 84.08 127.54 0.00 0.00 0.00 0.00 3.00 0.00 4 463713 Transcript 0 1.56 0.00 0.72 0.00 2.68 0.00 0.00 1.30 0.00 0.00 5.32 2.93 0.00 7.45 2.23 13.32 9.26 0.00 0.00 0.00 0.00 0.00 0.00 5 357640 Transcript 1 185.71 0.00 0.00 1.59 113.48 24.68 35.88 14.88 8.94 3.19 83.15 5.23 5.47 29.03 3.75 6.09 8.94 0.00 0.00 0.00 0.00 0.74 0.00 6 473682 Transcript 0 48.70 0.08 0.07 2.88 20.51 2.34 7.36 16.13 7.85 1.37 46.22 27.76 22.73 60.52 16.46 34.11 28.91 0.43 0.00 0.00 0.62 0.63 0.81 7 488786 Transcript 1 12.97 0.00 0.00 0.42 5.61 3.39 2.62 2.52 1.24 1.81 40.99 0.81 2.57 40.05 2.89 2.62 1.88 0.00 0.00 0.44 0.00 0.46 0.00 8 477586 Transcript 1 11.38 0.00 0.80 1.08 9.88 8.68 6.72 9.19 4.64 5.79 108.64 18.50 12.99 131.47 8.16 13.03 10.44 0.00 0.00 0.00 0.00 0.14 1.31 9 468692 Transcript 0 241.51 0.08 0.02 12.41 88.97 7.58 26.85 29.47 6.74 4.17 63.35 87.61 60.66 116.02 31.91 80.01 44.17 0.00 0.04 0.00 1.01 0.08 0.08 10 ER1a ExonRegion 0 8.47 0.00 0.00 0.00 8.15 0.45 0.38 0.00 0.00 0.05 12.42 5.73 1.66 31.23 13.82 16.57 20.35 0.00 0.00 0.00 0.09 0.00 0.00 11 E1_Ab KnownBoundary 0 34.30 0.00 0.00 0.00 15.28 2.90 2.08 0.00 0.00 0.00 14.95 6.15 0.00 42.09 32.76 43.66 21.41 0.00 0.00 0.00 0.00 0.00 0.00 12 ER1b ExonRegion 0 18.10 0.00 0.00 1.40 3.08 0.34 1.66 1.11 0.88 0.76 42.34 10.60 18.23 86.79 88.04 161.63 77.93 0.00 0.00 0.00 2.00 1.52 2.14 13 E1_Ac KnownBoundary 0 2.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40.43 5.85 6.33 33.61 20.27 64.94 54.32 0.00 0.00 0.00 0.00 0.00 7.17 14 E1_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.24 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1a_E4c KnownJunction 0 0.00 0.00 0.00 2.06 4.33 0.00 2.25 0.00 0.00 0.00 55.65 12.15 13.64 84.53 52.41 84.08 127.54 0.00 0.00 0.00 0.00 3.00 0.00 16 ER1c ExonRegion 1 1.76 0.00 0.00 1.36 0.00 0.00 1.32 1.73 0.00 0.00 60.24 8.66 15.63 92.03 70.60 121.86 122.13 0.00 0.00 0.00 0.00 2.08 5.87 17 ER1d ExonRegion 0 1.78 0.00 0.47 0.00 0.87 0.04 0.07 0.00 0.02 0.00 7.13 0.23 5.00 10.76 5.53 10.64 7.44 0.00 0.00 0.00 0.00 0.00 0.14 18 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E1b_E4c KnownJunction 0 3.11 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.63 5.85 0.00 11.65 4.45 23.67 18.51 0.00 0.00 0.00 0.00 0.00 0.00 20 Ix_SR2 SilentIntronRegion 0 2.23 0.00 0.00 0.00 1.11 0.73 0.00 0.00 0.00 0.00 10.86 31.79 14.91 7.30 6.55 3.62 10.93 0.00 0.00 0.00 0.88 0.00 0.34 21 ER2a ExonRegion 0 0.08 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 3.98 19.95 0.00 7.55 6.09 3.03 12.75 0.00 0.00 0.00 0.00 0.00 0.00 22 E2a_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.95 12.90 0.00 16.36 0.00 11.45 12.81 0.00 0.00 0.00 0.00 0.00 0.00 23 Ix Intron 0 9.31 0.00 0.00 0.10 4.87 0.93 2.54 3.25 1.49 0.52 34.29 30.10 9.52 16.55 4.77 5.26 7.01 0.00 0.00 0.00 0.33 0.21 0.15 24 Ix_SR1 SilentIntronRegion 0 4.23 0.00 0.00 0.00 1.77 0.00 1.00 2.93 0.23 0.00 10.44 50.82 12.36 3.87 6.61 3.51 8.21 0.00 0.00 0.00 0.00 0.00 0.00 25 Ix_AR2 ActiveIntronRegion 0 10.27 0.00 0.00 0.00 5.71 0.85 2.92 3.88 1.98 0.75 39.03 32.56 10.24 18.30 4.80 5.88 7.77 0.00 0.00 0.00 0.09 0.30 0.08 26 ER3a ExonRegion 1 185.71 0.00 0.00 1.59 113.48 24.68 35.88 14.88 8.94 3.19 83.15 5.23 5.47 29.03 3.75 6.09 8.94 0.00 0.00 0.00 0.00 0.74 0.00 27 E3_Ab KnownBoundary 1 44.23 0.00 0.00 3.50 6.54 0.00 5.03 3.66 2.58 2.93 66.91 12.45 0.00 12.54 0.00 3.59 22.81 0.00 0.00 0.00 0.00 0.00 0.00 28 ER3b ExonRegion 1 27.63 0.00 0.00 5.75 9.88 3.56 3.47 21.96 12.58 3.70 119.03 4.84 0.00 28.09 4.10 2.27 9.26 0.00 0.00 0.00 0.00 0.31 0.00 29 E3a_E4c KnownJunction 1 24.52 0.00 0.00 7.03 31.15 7.38 3.97 32.53 14.15 1.16 90.08 0.00 0.00 27.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 30 ER4a ExonRegion 1 25.95 0.00 0.00 0.84 11.23 6.78 5.24 5.03 2.48 0.45 71.82 1.62 5.15 60.67 5.78 5.24 3.76 0.00 0.00 0.88 0.00 0.91 0.00 31 E4_Ab KnownBoundary 1 23.26 0.00 0.00 0.00 3.82 5.11 5.56 8.67 4.54 2.74 108.19 0.00 0.00 98.83 4.45 8.12 4.21 0.00 0.00 0.00 0.00 2.27 0.00 32 ER4b ExonRegion 1 13.02 0.50 0.45 1.64 5.90 2.19 2.45 8.92 5.45 3.80 112.28 5.82 2.96 99.16 10.34 10.04 4.02 0.46 0.00 0.53 0.00 0.94 0.00 33 E4_Da KnownBoundary 1 3.04 0.00 0.00 3.20 16.30 21.46 0.00 6.20 8.45 5.05 64.02 12.30 0.00 124.61 19.66 15.72 13.65 0.00 0.00 0.00 0.00 2.27 0.00 34 E4a_E4c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.17 10.16 0.00 0.00 19.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER4c ExonRegion 1 11.38 0.00 0.80 1.08 9.88 8.68 6.72 9.19 4.64 5.79 108.64 18.50 12.99 131.47 8.16 13.03 10.44 0.00 0.00 0.00 0.00 0.14 1.31 36 E4_Ac KnownBoundary 1 25.71 0.00 0.00 3.06 17.32 5.11 10.16 13.72 7.49 8.65 144.35 24.31 12.50 155.81 9.64 16.32 8.79 0.00 0.00 0.00 0.00 0.00 0.00 37 ER4d ExonRegion 1 143.69 1.19 1.19 11.92 147.56 34.50 45.03 52.96 28.01 10.37 389.66 96.19 85.52 487.48 156.49 271.53 203.18 1.14 0.84 0.00 4.68 5.68 5.07 38 E4b_E5a KnownJunction 0 342.51 0.00 0.00 16.88 80.56 38.78 30.87 71.06 36.75 8.89 425.74 181.71 126.29 627.35 219.30 295.48 225.06 2.40 9.60 0.00 2.84 3.12 12.12 39 ER5a ExonRegion 1 248.57 1.84 0.82 15.94 81.76 21.79 28.89 59.29 32.51 7.82 461.55 144.29 133.19 563.43 198.24 228.85 255.02 3.07 4.45 0.00 6.75 3.71 2.26 40 E5a_E6a KnownJunction 0 280.94 0.00 0.00 17.15 145.33 8.23 43.77 84.12 32.93 8.97 524.34 247.13 271.09 748.66 235.61 392.20 303.88 0.00 0.00 0.00 10.63 8.94 7.68 41 ER6a ExonRegion 0 257.10 0.00 0.00 17.21 102.90 13.91 26.23 88.47 34.32 7.90 502.44 303.25 399.26 771.06 261.53 410.32 348.81 3.27 4.28 0.79 8.22 5.27 9.73 42 E6_Da KnownBoundary 0 32.67 0.00 0.00 3.76 4.24 0.00 3.62 6.98 5.87 1.67 22.22 6.45 18.83 27.02 10.51 23.58 34.41 2.45 0.00 0.00 0.00 0.00 0.00 43 E6a_E6b KnownJunction 1 204.11 0.00 0.00 19.68 73.34 2.90 8.26 86.30 28.50 5.80 363.20 124.09 292.19 527.05 340.69 355.29 319.68 0.00 0.00 3.26 19.89 6.06 7.85 44 E6_Db KnownBoundary 0 35.64 0.00 0.00 1.47 0.00 0.00 4.24 6.33 3.73 0.00 40.69 5.70 14.93 28.43 4.45 46.23 40.30 0.00 0.00 0.00 0.00 0.00 0.00 45 ER6b ExonRegion 1 82.54 0.00 0.00 5.45 8.03 7.34 9.27 17.28 14.82 1.15 75.38 38.97 79.73 164.04 29.01 101.05 85.82 1.85 0.00 0.00 4.41 0.00 5.87 46 ER6c ExonRegion 0 67.16 0.31 0.28 4.71 24.70 5.53 7.95 21.44 10.95 2.25 74.19 47.68 53.17 132.45 38.95 74.56 53.44 0.92 0.01 0.00 1.78 0.96 2.02 47 E6_Ab KnownBoundary 0 32.15 0.00 0.00 3.60 24.45 4.54 12.28 19.39 6.60 1.40 37.54 24.76 33.28 64.63 32.26 88.10 34.13 0.00 0.00 0.00 0.00 0.00 0.00 48 ER6d ExonRegion 0 143.35 1.35 0.00 13.88 81.77 22.98 28.28 61.80 18.30 7.02 471.98 238.12 199.17 692.32 311.30 294.28 346.21 0.17 3.10 0.77 12.02 3.65 5.72 49 E6_Dc KnownBoundary 0 20.82 0.00 0.00 0.00 8.06 2.56 2.25 6.24 5.12 1.56 6.63 18.01 12.99 28.84 0.00 16.58 16.64 0.00 0.00 0.00 2.78 0.00 0.00 50 E6c_E6c KnownJunction 0 200.85 0.00 0.00 11.82 107.30 57.81 56.75 52.70 20.66 6.72 521.08 225.97 209.56 606.75 310.53 227.80 375.78 0.00 4.61 0.00 8.34 4.84 6.83 51 ER6e ExonRegion 0 67.25 0.00 0.00 1.98 26.09 2.11 9.20 14.63 3.78 0.73 23.27 33.77 14.36 44.16 13.81 27.72 29.77 0.59 0.00 0.00 0.38 0.95 0.79 52 E6_Ac KnownBoundary 0 89.20 0.00 0.00 3.36 40.32 8.46 20.40 12.20 2.66 0.00 21.74 13.95 41.39 57.33 13.35 69.98 35.16 0.00 0.00 0.00 0.00 0.00 3.24 53 ER6f ExonRegion 0 182.93 0.00 0.00 13.55 102.33 29.06 42.67 79.21 30.83 13.58 524.42 243.76 248.03 674.22 293.73 381.61 374.57 1.85 1.19 1.95 10.28 4.53 5.53 54 E6_Dd KnownBoundary 0 278.27 0.00 0.00 24.84 90.58 49.46 51.85 103.63 31.19 19.37 550.19 210.52 341.54 658.37 285.43 499.61 472.18 7.09 0.00 3.13 19.09 2.82 3.24 55 ER6g ExonRegion 0 248.14 1.13 0.52 32.00 127.30 32.77 39.15 114.11 48.54 20.35 638.68 304.91 411.94 818.83 364.91 677.48 476.80 4.89 1.89 0.71 16.69 6.06 12.73 56 E6e_E7a KnownJunction 0 27.12 0.00 0.00 3.36 11.46 0.00 4.50 17.87 12.70 1.67 63.96 7.35 6.82 34.43 4.82 19.74 15.99 0.00 0.00 0.00 0.00 0.00 0.00 57 E6e_E8a KnownJunction 0 422.07 3.35 1.60 39.69 198.13 15.16 38.69 120.51 55.87 15.96 688.49 305.80 523.34 1068.28 541.94 787.74 558.48 6.55 4.52 0.00 20.39 8.27 15.37 58 E6e_E9a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 7.90 0.00 0.00 17.54 0.00 3.93 8.60 0.00 0.00 0.00 0.00 0.00 0.00 59 ER6h ExonRegion 0 0.00 0.00 0.00 0.00 5.35 0.00 0.00 2.59 0.00 0.00 0.00 0.00 0.00 3.25 0.00 2.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 ER7a ExonRegion 0 33.27 0.00 0.00 1.46 19.81 1.73 7.80 10.59 3.98 0.82 23.46 22.25 16.58 31.05 8.27 14.43 16.43 0.20 0.00 0.00 0.33 0.62 0.43 61 ER8a ExonRegion 0 380.53 1.68 2.85 27.61 164.84 42.10 46.61 100.68 41.09 12.20 676.93 348.89 375.52 804.41 377.38 489.60 431.46 1.87 3.38 2.18 12.54 6.88 6.25 62 E8a_E9a KnownJunction 0 774.06 0.00 4.67 35.06 278.95 63.83 82.81 103.14 40.62 11.15 621.26 323.96 417.34 666.91 305.71 534.22 333.61 0.00 4.80 0.00 17.30 8.27 4.35 63 E9_Aa NovelBoundary 0 37.19 3.35 0.00 0.00 6.79 0.00 14.62 15.12 2.95 0.00 13.48 5.55 12.99 41.50 22.25 8.72 13.84 0.00 0.00 0.00 0.00 0.00 4.35 64 ER9a ExonRegion 0 393.11 0.00 3.63 24.06 183.74 29.26 54.48 72.60 27.61 11.21 514.63 324.42 344.59 689.99 342.38 432.36 318.18 0.79 2.70 1.83 13.75 5.36 4.88 65 E9_Da NovelBoundary 1 72.68 0.00 3.19 6.76 26.91 2.84 2.25 24.52 19.99 1.18 52.33 18.01 32.79 93.41 8.90 105.53 27.49 0.00 0.00 0.00 2.66 0.00 4.35 66 E9a_E10b KnownJunction 0 561.73 0.00 1.36 16.88 306.79 23.23 43.99 52.12 29.37 10.21 456.69 292.90 344.13 644.71 356.88 302.40 398.41 0.00 4.42 0.00 16.49 0.00 3.67 67 I9 Intron 0 196.34 1.12 0.89 7.18 81.73 12.75 30.07 30.54 11.84 3.96 86.38 108.38 120.96 131.25 29.83 71.30 42.26 0.22 1.65 1.10 1.21 0.95 1.52 68 I9_SR1 SilentIntronRegion 1 27.03 1.57 1.12 0.31 14.53 2.20 10.40 15.61 1.84 1.25 22.42 22.51 28.54 68.21 12.10 14.10 17.26 1.79 0.00 2.01 1.76 0.12 0.00 69 I9_AR1 ActiveIntronRegion 1 62.86 2.03 1.23 2.59 18.73 3.67 25.55 20.74 5.93 1.15 42.33 49.79 80.67 108.65 20.02 33.88 35.65 3.70 0.00 2.98 2.20 2.08 0.00 70 I9_AR2 ActiveIntronRegion 1 135.34 0.68 1.21 5.03 68.53 5.95 26.34 34.64 11.96 5.44 77.62 90.70 91.26 116.96 23.91 59.49 50.74 0.38 4.75 1.92 0.73 1.79 1.75 71 I9_SR2 SilentIntronRegion 1 167.34 1.29 0.95 7.49 84.81 15.53 34.79 33.53 13.79 3.55 100.25 139.91 157.61 157.72 32.28 87.00 42.99 0.00 0.37 1.10 1.78 0.84 1.35 72 I9_AR3 ActiveIntronRegion 0 331.90 1.04 0.47 9.09 94.05 13.59 24.71 22.06 8.47 3.93 70.17 62.99 74.65 91.25 31.37 52.81 35.86 0.35 2.04 0.27 0.28 0.53 1.88 73 E10_Aa NovelBoundary 0 423.78 0.00 0.00 23.51 99.66 2.16 26.94 18.48 15.10 10.10 69.81 96.93 52.43 113.43 58.97 56.65 44.79 0.00 0.00 0.00 0.00 0.00 0.00 74 ER10a ExonRegion 0 241.51 0.08 0.02 12.41 88.97 7.58 26.85 29.47 6.74 4.17 63.35 87.61 60.66 116.02 31.91 80.01 44.17 0.00 0.04 0.00 1.01 0.08 0.08 75 E10_Ab KnownBoundary 0 422.96 0.00 0.00 27.74 242.11 30.32 50.79 53.07 16.55 7.17 113.03 110.14 99.51 162.69 59.21 145.69 66.39 0.00 0.00 0.00 3.15 0.00 0.00 76 ER10b ExonRegion 0 707.95 4.51 0.78 42.22 426.10 49.02 87.96 91.02 36.00 14.94 475.92 331.36 400.03 652.02 330.18 386.88 335.00 0.14 1.17 0.00 15.16 3.81 5.16 77 E10_Da NovelBoundary 0 43.64 5.26 0.00 9.02 15.28 9.65 19.87 4.03 11.69 3.33 21.90 25.81 20.45 25.08 14.71 14.95 13.46 0.00 0.00 3.00 0.00 3.00 3.33 78 E10a_E11a KnownJunction 1 819.11 6.38 1.27 47.41 363.50 27.94 84.04 79.77 32.26 12.81 315.87 378.87 428.38 424.51 318.93 325.81 180.18 0.00 0.00 0.00 8.59 5.33 10.76 79 I10 Intron 0 54.61 0.98 0.44 1.95 19.91 6.60 10.49 13.60 3.98 2.05 21.34 16.29 18.64 20.23 11.22 22.83 19.01 0.22 1.53 1.02 0.26 0.75 0.00 80 I10_SR1 SilentIntronRegion 0 54.99 0.98 0.44 1.96 20.05 6.65 10.56 13.70 4.00 2.07 21.49 16.40 18.77 20.38 11.30 22.99 19.14 0.22 1.54 1.03 0.27 0.76 0.00 81 E11_Aa NovelBoundary 0 47.27 3.35 1.33 5.59 24.96 10.11 20.67 12.28 4.60 2.61 17.27 18.61 15.10 33.08 36.71 21.11 21.13 0.00 0.00 0.00 0.00 2.88 3.93 82 ER11a ExonRegion 0 853.60 5.79 2.72 58.28 341.08 51.63 97.40 118.55 50.09 21.12 543.26 526.41 526.83 813.32 483.08 594.60 332.69 3.02 0.00 2.05 12.73 9.85 9.85 83 E11_Da NovelBoundary 0 132.17 0.00 1.33 3.23 43.97 7.44 14.88 24.36 8.45 0.00 37.59 20.11 20.94 32.14 8.90 25.21 17.20 2.57 9.22 3.07 0.00 0.00 4.18 84 E11a_E12a KnownJunction 0 1590.58 13.09 7.13 56.94 578.69 100.11 132.31 170.21 61.20 24.39 1057.27 516.47 581.13 868.74 496.82 584.55 811.59 1.70 0.00 5.31 37.62 8.82 15.45 85 I11 Intron 0 121.64 1.57 1.69 4.38 36.69 11.02 14.48 25.40 6.52 4.74 26.80 21.66 25.55 43.48 18.46 28.85 21.87 0.42 0.98 1.31 1.36 0.96 2.26 86 I11_SR1 SilentIntronRegion 0 122.38 1.58 1.70 4.41 36.92 11.09 14.57 25.55 6.56 4.77 26.97 21.79 25.69 43.74 18.57 29.03 22.00 0.43 0.99 1.32 1.37 0.97 2.28 87 E12_Aa NovelBoundary 1 174.25 2.83 5.20 2.06 67.49 18.46 35.15 14.91 5.99 6.04 35.80 24.01 71.10 54.27 28.56 20.51 35.34 2.03 4.80 5.56 0.00 0.00 3.67 88 ER12a ExonRegion 0 1065.80 4.93 5.44 49.35 383.30 49.02 88.38 138.36 42.40 16.35 522.63 530.18 493.18 693.09 397.74 465.21 334.12 0.66 2.03 1.53 10.47 5.95 11.20 89 E12a_E13a KnownJunction 0 1547.24 0.00 1.69 66.16 568.17 79.16 156.12 132.26 41.70 18.51 465.33 571.84 441.69 725.18 472.22 431.43 257.88 0.00 0.00 0.00 3.03 2.39 3.76 90 ER13a ExonRegion 1 732.00 3.27 10.88 43.90 262.24 37.39 68.64 114.00 35.30 14.28 357.98 538.26 389.22 504.02 385.43 290.07 201.08 0.56 2.56 1.92 6.12 5.47 5.09 91 IG16 Intergenic 0 119.97 0.62 0.92 7.69 84.44 7.15 22.61 24.97 12.56 1.76 43.18 80.64 68.90 63.93 25.23 41.31 38.43 0.97 2.04 0.83 0.61 2.55 1.47 92 IG16_AR1 ActiveIntergenicRegion 0 120.09 0.62 0.92 7.70 84.53 7.16 22.63 24.99 12.58 1.76 43.22 80.73 68.98 64.00 25.26 41.35 38.47 0.97 2.04 0.83 0.61 2.56 1.47