Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RBM15 Gene 0 18.61 23.76 21.67 18.25 17.05 16.15 27.35 29.17 24.62 30.78 86.01 53.11 52.00 98.34 46.15 82.27 103.76 110.82 26.90 83.88 30.87 20.97 26.14 2 393601 Transcript 0 1.81 0.87 0.00 0.00 0.00 0.00 1.70 0.00 0.00 0.00 0.00 1.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 294837 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 369784 Transcript 0 15.59 17.57 8.09 9.50 14.67 7.62 20.80 10.50 9.64 18.37 17.78 30.49 19.10 26.14 32.58 19.35 32.15 8.16 10.07 33.93 2.00 2.17 6.44 5 487146 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 1.81 0.87 0.00 0.00 0.00 0.00 1.70 0.00 0.00 0.00 0.00 1.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 Ix_AR1 ActiveIntronRegion 0 6.29 8.43 16.76 11.50 9.21 9.80 5.44 8.22 11.09 10.53 7.10 6.70 2.53 6.19 10.19 4.51 2.60 9.09 11.19 13.42 0.88 2.16 0.70 8 E2_Aa NovelBoundary 0 3.41 0.00 1.66 3.20 3.74 15.79 0.00 4.23 5.12 1.50 4.95 0.00 0.00 4.77 8.90 0.00 0.00 4.31 4.14 2.62 0.00 0.00 0.00 9 ER2a ExonRegion 0 1.04 1.67 0.80 2.56 1.47 2.62 1.38 1.27 0.51 1.13 2.59 0.20 0.01 2.53 3.32 1.63 2.02 4.37 2.62 2.97 0.93 0.46 0.64 10 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.12 0.00 3.33 9.54 0.00 0.00 0.00 3.15 0.00 0.00 11 ER2b ExonRegion 0 9.79 16.51 21.94 17.77 12.36 17.34 27.34 32.21 29.61 34.87 111.09 56.40 62.22 134.12 49.44 110.81 137.95 155.40 33.53 106.46 43.22 25.47 34.96 12 E2_Da NovelBoundary 1 10.45 18.15 6.59 9.19 8.23 25.27 17.09 24.11 31.22 48.11 119.40 92.73 159.08 74.46 4.45 60.33 108.09 32.87 16.47 70.44 30.21 13.66 23.05 13 E2a_E3a KnownJunction 0 0.00 12.37 4.82 1.96 12.22 2.10 13.69 5.54 2.86 5.88 7.42 6.30 6.82 24.37 17.80 4.10 21.51 2.24 0.00 14.32 0.00 0.00 0.00 14 E2a_E4a KnownJunction 0 20.60 18.94 24.25 14.18 34.72 4.94 4.50 21.60 14.32 8.81 54.07 66.47 26.46 39.14 33.99 27.86 46.28 63.17 4.80 59.51 14.52 5.88 0.00 15 I2 Intron 0 23.04 29.96 16.34 17.64 42.59 27.32 46.47 34.86 27.95 42.59 65.65 117.19 102.04 58.11 28.62 52.66 64.31 14.28 14.44 46.70 8.41 38.83 17.96 16 I2_AR1 ActiveIntronRegion 0 23.05 29.98 16.35 17.65 42.62 27.34 46.50 34.88 27.96 42.61 65.69 117.27 102.10 58.15 28.63 52.69 64.35 14.29 14.45 46.73 8.41 38.86 17.97 17 E3_Aa NovelBoundary 1 66.68 45.19 15.02 31.10 94.23 35.77 71.63 26.78 49.25 57.67 53.70 143.00 53.57 67.10 90.61 60.33 47.50 6.18 4.14 59.06 2.59 35.03 12.12 18 ER3a ExonRegion 1 43.73 51.30 18.04 15.05 64.78 30.89 38.08 20.69 24.86 34.71 60.76 81.59 84.49 51.13 79.80 49.27 69.88 8.77 18.26 36.11 3.26 22.04 26.35 19 E3_Da KnownBoundary 1 74.46 66.50 24.66 24.04 78.27 49.35 62.62 37.38 44.30 76.58 79.07 93.33 114.12 64.45 92.47 65.62 86.11 13.31 24.19 78.23 9.27 18.80 24.84 20 ER3b ExonRegion 1 32.75 27.25 12.90 13.97 27.96 20.77 36.44 17.11 21.49 35.78 38.61 78.58 44.32 33.86 56.94 38.49 53.64 10.72 16.56 53.78 6.01 6.51 14.98 21 E3_Db NovelBoundary 0 62.90 39.60 28.68 25.80 89.64 69.16 79.85 44.28 34.66 76.74 100.71 75.17 76.29 78.05 110.64 70.92 111.83 17.20 23.25 53.82 10.87 65.76 36.96 22 E3b_E4a KnownJunction 0 14.00 13.09 6.56 12.55 3.82 0.00 12.28 8.83 4.57 13.46 7.32 6.60 6.17 20.19 22.99 15.47 21.32 11.52 13.65 33.68 0.00 0.00 4.35 23 I3 Intron 1 109.98 79.41 32.34 27.36 83.68 43.67 63.91 53.70 34.68 54.54 44.64 102.46 50.36 45.44 88.13 37.90 41.03 7.23 13.54 37.53 3.36 44.95 12.48 24 I3_AR1 ActiveIntronRegion 1 110.32 79.66 32.45 27.44 83.95 43.80 64.11 53.87 34.79 54.71 44.77 102.77 50.51 45.58 88.41 38.02 41.15 7.25 13.58 37.64 3.37 45.09 12.52 25 E4_Aa NovelBoundary 1 192.85 126.62 83.73 47.58 123.26 61.33 83.11 75.90 53.01 82.82 56.07 130.24 79.38 81.23 166.51 78.61 34.50 39.09 35.58 59.51 19.34 32.21 26.72 26 ER4a ExonRegion 0 125.63 130.94 74.93 63.52 82.90 38.47 91.11 80.51 48.39 74.16 116.72 155.40 101.07 84.32 123.28 80.18 113.09 70.73 41.04 129.95 20.51 40.38 24.74 27 ER4b ExonRegion 0 8.47 10.17 0.31 3.07 6.69 0.00 8.94 0.86 1.24 1.43 5.32 4.33 11.73 6.90 2.90 2.23 1.65 4.62 0.00 4.26 1.10 0.00 0.00 28 IG50 Intergenic 0 8.22 17.87 11.55 21.33 19.60 7.42 42.84 22.32 9.53 13.62 9.83 29.51 35.72 15.68 12.47 21.11 22.91 29.58 9.79 43.42 3.76 3.96 7.34 29 IG50_AR1 ActiveIntergenicRegion 0 10.56 24.74 14.85 28.10 16.06 10.52 50.00 27.15 11.26 16.47 29.57 56.38 30.58 45.71 19.54 58.32 51.56 116.94 22.26 104.18 11.01 6.39 14.44 30 IG50_SR1 SilentIntergenicRegion 0 2.13 11.48 3.55 7.01 6.22 3.07 18.19 8.10 3.26 3.70 5.89 16.65 18.18 5.33 5.64 12.27 17.26 14.88 5.51 31.20 2.89 2.11 3.82 31 IG50_AR2 ActiveIntergenicRegion 0 2.05 19.27 3.90 9.98 11.71 1.80 28.02 10.51 5.43 3.88 10.01 27.70 42.96 2.03 4.95 13.14 14.92 13.65 6.46 25.73 1.14 1.48 6.06 32 IG50_SR2 SilentIntergenicRegion 0 3.05 14.82 3.05 12.93 16.98 5.39 33.19 10.79 7.07 6.59 5.20 41.27 46.47 3.17 5.82 10.34 5.53 10.85 2.46 33.23 1.06 4.79 7.13 33 IG50_AR3 ActiveIntergenicRegion 0 4.15 10.30 7.86 9.67 16.24 5.74 28.54 13.62 4.04 10.24 7.20 35.17 32.77 3.45 11.21 8.51 14.23 12.90 1.60 27.25 2.90 5.32 6.35 34 IG50_AR4 ActiveIntergenicRegion 0 7.14 8.93 6.09 8.58 12.01 2.84 26.81 8.83 6.81 4.77 2.54 26.06 24.38 2.80 8.61 4.72 10.41 7.75 1.12 23.06 1.24 4.21 1.92 35 IG50_SR3 SilentIntergenicRegion 0 7.23 12.32 7.82 12.30 19.64 3.93 30.26 8.86 5.21 10.10 4.48 16.84 23.60 6.00 8.30 13.25 18.25 17.46 7.88 33.75 4.06 2.76 8.31 36 IG50_AR5 ActiveIntergenicRegion 0 4.09 12.96 9.70 16.18 24.75 6.23 40.27 12.28 7.09 8.12 6.17 22.56 40.10 6.15 10.97 18.98 20.73 19.24 4.61 30.64 1.63 3.10 9.01 37 IG50_SR4 SilentIntergenicRegion 0 10.80 19.83 12.67 18.89 18.18 6.26 40.00 24.69 9.71 13.45 8.11 28.32 35.94 10.88 12.77 16.72 20.21 18.80 8.23 34.89 3.14 3.68 5.88 38 IG50_AR6 ActiveIntergenicRegion 0 6.57 15.41 10.18 32.43 15.10 9.42 67.17 24.70 13.55 16.93 13.14 36.15 55.44 25.37 19.51 30.93 38.95 32.70 22.32 68.72 3.80 4.47 7.14 39 IG50_SR5 SilentIntergenicRegion 0 5.08 16.11 13.25 21.12 20.12 9.20 51.78 22.68 10.71 16.03 8.58 26.67 33.41 18.84 13.01 24.84 20.64 24.63 9.50 47.62 4.81 3.64 8.32 40 IG50_AR7 ActiveIntergenicRegion 0 1.41 4.07 1.12 3.86 9.14 3.51 3.53 8.21 2.06 5.93 3.54 0.00 0.00 12.05 4.11 1.24 5.50 20.94 0.00 14.01 1.84 0.00 0.00 41 IG50_AR8 ActiveIntergenicRegion 0 5.63 17.51 6.07 18.32 32.24 9.48 52.25 20.19 7.05 18.57 7.07 1.27 21.28 23.33 11.18 17.83 22.95 34.79 3.26 41.72 10.59 1.27 6.52 42 IG50_AR9 ActiveIntergenicRegion 0 12.87 26.54 20.69 37.94 46.84 18.34 94.85 59.87 21.39 35.69 6.21 18.81 44.40 15.98 25.49 20.38 12.70 28.24 11.24 57.22 0.83 2.45 8.91 43 IG50_AR10 ActiveIntergenicRegion 0 18.97 32.90 13.26 13.09 15.96 14.34 49.79 22.96 7.28 19.29 1.66 16.54 35.34 5.05 9.22 4.46 4.83 4.22 9.21 31.08 0.00 0.00 0.00 44 IG50_AR19 ActiveIntergenicRegion 0 0.00 3.05 6.33 18.17 13.38 4.58 19.86 10.66 7.62 16.82 0.00 9.38 12.51 9.74 2.90 0.00 1.65 9.24 3.19 7.45 0.00 3.13 0.00 45 IG50_AR20 ActiveIntergenicRegion 0 0.00 6.10 9.80 26.80 13.38 7.34 25.16 14.60 9.19 17.20 0.00 14.91 23.45 14.62 2.90 0.00 3.30 9.85 4.96 12.06 1.22 4.17 0.00 46 IG50_AR21 ActiveIntergenicRegion 0 3.42 7.51 21.11 44.56 15.85 7.34 34.73 32.44 14.63 23.47 0.00 36.63 38.96 16.74 2.68 8.69 3.30 12.08 9.07 22.42 2.20 4.17 4.74 47 IG50_SR7 SilentIntergenicRegion 0 9.34 18.17 14.54 33.77 30.02 10.19 50.99 28.18 12.21 17.62 6.62 25.85 44.66 18.65 11.15 15.72 19.03 17.68 9.06 31.82 1.97 4.74 7.14 48 IG50_AR22 ActiveIntergenicRegion 0 0.00 1.02 0.37 4.63 5.89 0.00 7.15 2.59 0.00 1.03 0.00 14.72 4.22 5.20 5.22 0.00 1.65 2.03 3.19 9.36 2.20 5.42 0.88