Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ATXN7L2 Gene 0 15.97 15.13 41.38 53.38 14.11 15.93 11.78 22.07 29.46 34.90 32.05 7.20 11.18 30.50 23.89 24.40 27.45 64.00 27.98 28.74 23.91 27.62 25.19 2 463678 Transcript 0 2.29 3.00 3.38 8.34 3.32 4.18 2.15 2.42 5.10 5.59 3.75 1.38 1.88 1.94 1.50 0.64 3.17 8.95 5.58 6.53 6.10 3.75 3.38 3 369870 Transcript 0 0.00 1.38 2.08 1.50 0.00 1.45 0.00 2.34 2.30 0.75 4.47 0.00 2.84 2.65 7.60 3.46 2.34 6.11 2.07 2.62 5.59 3.06 0.00 4 497545 Transcript 0 11.43 7.35 20.56 37.92 9.44 10.18 9.04 10.97 18.03 21.21 13.01 3.15 4.10 11.37 8.95 10.45 9.67 43.86 17.20 20.64 13.87 17.49 14.45 5 369869 Transcript 0 0.09 2.96 3.69 1.83 5.58 3.54 1.23 2.74 2.38 3.77 0.00 0.00 0.00 2.48 0.00 1.40 2.50 2.35 0.00 0.64 3.21 1.52 3.23 6 459635 Transcript 0 0.00 0.00 8.37 7.99 0.00 0.00 0.00 0.00 5.03 11.85 10.27 0.00 0.00 9.48 0.00 0.00 4.77 10.53 0.00 5.82 2.78 6.25 0.00 7 ER1a ExonRegion 0 0.00 0.00 3.03 0.90 0.23 0.20 0.29 0.57 1.43 0.38 1.24 0.39 0.41 0.24 0.20 0.00 0.37 1.83 1.32 0.94 1.71 0.69 2.57 8 E1_Ab KnownBoundary 0 0.00 0.00 1.30 0.00 3.31 0.00 1.90 0.00 1.59 2.50 4.47 0.00 0.00 2.35 0.00 0.00 0.00 0.00 4.14 0.00 0.00 0.00 0.00 9 ER1b ExonRegion 0 0.77 2.21 1.30 1.42 2.14 1.63 1.46 2.91 2.06 4.05 7.39 2.58 0.07 6.65 10.35 4.13 1.90 8.53 2.89 2.70 5.47 2.28 3.29 10 E1a_E2a KnownJunction 0 0.00 0.00 1.42 2.06 0.00 0.00 0.00 1.64 0.00 3.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.19 0.00 0.00 0.00 0.00 0.00 11 E1a_E3b KnownJunction 0 0.00 2.76 4.17 3.00 0.00 2.90 0.00 4.68 4.60 1.50 8.95 0.00 5.68 5.30 15.20 6.92 4.68 12.23 4.14 5.24 11.18 6.12 0.00 12 I1 Intron 0 2.59 2.12 8.76 9.65 3.87 6.14 3.77 4.66 8.91 7.81 9.80 4.24 4.98 8.51 4.95 4.98 4.63 23.82 11.97 13.19 12.96 7.64 10.23 13 I1_SR1 SilentIntronRegion 0 2.59 2.12 8.77 9.67 3.88 6.15 3.78 4.67 8.93 7.83 9.82 4.25 4.99 8.53 4.96 4.99 4.64 23.86 11.99 13.22 12.98 7.65 10.25 14 E2_Aa NovelBoundary 0 44.82 24.14 9.28 42.65 3.23 25.44 15.41 20.33 31.25 25.89 6.90 0.00 0.00 19.19 14.09 4.02 18.05 36.27 18.45 39.18 16.43 23.39 12.21 15 ER2a ExonRegion 0 9.16 8.92 9.08 21.22 13.03 9.70 8.31 7.49 13.90 17.02 11.72 5.11 7.11 7.54 5.80 2.55 12.31 28.05 20.99 22.11 22.71 14.33 10.94 16 E2_Da NovelBoundary 0 3.78 14.41 11.27 37.26 12.65 8.86 8.04 9.20 12.21 28.04 9.63 11.70 0.00 18.78 20.27 24.78 7.85 52.69 35.01 46.66 32.43 46.90 47.72 17 E2a_E3b KnownJunction 0 0.00 3.09 0.00 9.16 0.00 6.81 0.00 0.00 5.06 1.67 2.05 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 3.07 0.00 0.00 0.00 18 E3_Aa NovelBoundary 0 18.00 15.52 4.91 34.83 4.33 10.22 11.75 20.41 23.29 14.83 21.74 6.30 6.66 10.36 0.00 11.54 13.65 26.57 28.61 35.79 19.46 11.63 4.35 19 ER3a ExonRegion 0 14.65 13.26 20.84 33.68 13.86 14.02 15.75 12.29 19.63 25.99 15.60 6.98 5.34 12.47 8.35 13.17 8.81 49.15 20.55 25.87 15.37 24.10 18.26 20 E3_Ab KnownBoundary 0 6.74 15.00 44.94 43.28 0.00 2.90 8.13 19.43 22.08 36.18 19.11 0.00 6.82 4.77 0.00 3.85 4.77 72.63 26.17 25.69 13.04 33.56 26.04 21 ER3b ExonRegion 0 9.74 15.46 43.79 63.41 14.65 21.55 14.42 22.68 38.73 40.04 68.66 18.05 5.56 32.61 27.58 28.53 52.00 97.25 40.04 42.16 32.24 56.16 34.20 22 E3_Da KnownBoundary 0 24.23 13.42 30.96 45.48 14.09 11.24 9.89 15.24 19.30 15.47 16.64 6.15 8.28 7.12 4.45 12.99 9.35 81.79 4.05 18.09 16.68 5.51 16.22 23 E3a_E3c KnownJunction 0 7.26 3.09 26.40 25.80 4.33 7.15 3.93 16.31 25.43 31.21 57.80 0.00 12.82 34.67 27.44 18.97 29.73 43.98 39.06 21.86 34.47 40.35 23.82 24 ER3c ExonRegion 0 9.02 6.35 17.23 41.13 5.42 9.26 6.23 13.17 19.52 18.16 10.78 1.65 3.46 7.83 7.22 7.40 9.23 58.98 19.24 20.77 18.51 13.67 12.47 25 E3_Ac KnownBoundary 0 11.11 17.23 11.68 45.02 3.74 0.00 0.00 25.34 20.78 17.30 15.21 0.00 6.82 4.36 8.90 12.73 0.00 46.18 9.60 23.84 17.24 14.21 8.71 26 ER3d ExonRegion 0 18.62 18.22 41.52 59.97 12.84 5.71 9.76 35.43 33.61 53.08 41.17 6.29 4.28 35.29 29.57 29.66 29.80 83.72 47.32 51.84 28.46 34.88 24.28 27 E3b_E4a KnownJunction 0 26.67 21.90 43.35 74.15 25.30 18.23 12.81 35.28 46.06 53.80 45.85 19.66 0.00 28.96 18.91 15.04 42.26 122.54 20.71 34.00 34.97 39.43 15.54 28 ER4a ExonRegion 0 17.63 26.57 44.30 54.18 18.44 21.39 19.93 27.09 35.63 52.46 48.62 6.44 14.23 41.50 30.90 32.06 40.96 91.18 39.07 35.40 27.74 38.05 31.69 29 E4_Da NovelBoundary 0 0.00 0.00 1.80 0.00 0.00 0.00 3.97 4.48 0.00 1.07 10.16 0.00 0.00 2.35 0.00 0.00 9.07 5.14 8.85 3.26 2.66 6.12 12.80 30 E4a_E5a KnownJunction 0 8.89 40.32 54.58 66.66 35.48 26.23 21.95 34.30 35.33 51.01 55.01 6.30 40.91 63.69 36.84 30.68 66.67 88.71 12.24 39.12 38.61 32.70 30.22 31 E4a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 ER5a ExonRegion 1 14.84 42.26 56.91 63.90 24.88 20.64 19.65 30.52 35.96 49.45 65.56 10.80 14.60 58.35 38.85 26.50 64.15 103.49 37.30 36.85 29.78 32.97 35.54 33 E5_Ab KnownBoundary 0 24.23 46.37 81.93 70.12 15.03 22.71 19.92 45.10 51.65 61.16 66.12 12.60 6.82 43.68 33.01 30.16 28.33 118.72 30.40 38.03 34.90 28.41 15.71 34 ER5b ExonRegion 0 18.28 31.60 78.40 77.73 20.70 25.39 23.51 38.60 55.76 53.19 73.80 15.22 12.54 66.03 43.21 41.56 61.19 108.54 55.31 42.13 38.84 42.84 42.57 35 E5_Da NovelBoundary 0 3.63 3.22 5.17 11.75 3.14 13.97 9.98 0.00 4.05 2.47 14.95 11.40 0.00 12.89 18.30 4.10 0.00 26.70 0.00 3.26 6.12 5.76 7.85 36 E5a_E6a KnownJunction 0 13.26 33.88 83.50 84.34 8.32 36.00 28.35 37.05 57.78 67.85 84.18 18.46 0.00 38.91 31.28 46.06 74.43 93.52 59.30 50.81 44.17 32.15 28.68 37 I5 Intron 0 5.99 3.42 5.96 13.10 3.31 6.32 4.32 3.87 6.67 6.94 9.72 1.33 3.16 11.26 6.93 7.34 7.86 27.25 12.10 14.64 9.14 11.03 10.88 38 I5_SR1 SilentIntronRegion 0 6.01 3.43 5.98 13.14 3.32 6.34 4.34 3.88 6.69 6.97 9.75 1.33 3.18 11.30 6.96 7.37 7.89 27.35 12.14 14.69 9.17 11.07 10.92 39 E6_Aa NovelBoundary 0 0.00 6.05 22.26 13.25 12.73 12.10 4.46 2.34 6.57 12.57 15.90 0.00 6.82 9.71 0.00 12.39 9.54 26.12 12.14 17.26 17.05 16.78 0.00 40 ER6a ExonRegion 0 25.37 40.35 69.18 81.33 29.82 47.63 27.47 33.30 62.16 53.66 66.44 28.12 12.66 74.49 44.92 49.52 67.69 98.91 47.36 47.19 41.47 51.33 38.53 41 E6_Da NovelBoundary 0 0.00 6.31 7.89 15.18 3.90 0.00 5.83 1.81 14.61 12.84 1.95 0.00 0.00 9.48 20.27 23.16 4.77 18.16 22.40 6.33 17.05 8.02 23.30 42 E6a_E7a KnownJunction 0 31.12 26.77 75.57 95.93 40.58 24.30 19.43 34.26 50.43 45.37 49.01 18.61 6.82 58.45 57.98 70.58 24.40 133.44 51.30 37.84 31.14 35.27 31.24 43 I6 Intron 0 6.23 3.27 11.98 13.59 3.58 3.19 4.79 8.96 6.41 10.30 8.28 7.70 3.10 7.40 9.43 12.73 10.16 26.33 14.92 10.82 6.49 17.85 13.37 44 I6_SR1 SilentIntronRegion 0 6.27 3.28 12.04 13.66 3.60 3.21 4.81 9.01 6.44 10.35 8.32 7.75 3.12 7.44 9.48 12.80 10.22 26.47 15.00 10.87 6.52 17.94 13.44 45 E7_Aa NovelBoundary 0 6.22 2.50 12.57 15.68 0.00 0.00 4.15 15.36 8.22 9.78 0.00 6.30 0.00 9.48 25.84 12.48 0.00 20.98 18.45 8.31 11.31 8.51 4.35 46 ER7a ExonRegion 0 20.79 21.33 80.91 91.07 21.83 22.73 15.49 53.77 58.84 63.54 70.41 15.87 19.09 65.74 53.23 48.51 62.16 120.15 47.98 41.54 39.43 47.03 31.54 47 E7_Da KnownBoundary 0 13.71 9.74 51.12 93.96 11.71 28.28 14.35 19.06 29.54 34.11 17.16 0.00 0.00 24.37 13.23 20.08 17.48 88.42 35.95 33.11 14.95 54.87 27.15 48 E7a_E7c KnownJunction 0 5.78 18.62 29.21 27.70 14.86 17.55 27.20 47.52 40.02 28.04 58.38 49.82 20.94 37.44 40.55 19.40 40.49 70.80 13.27 9.14 30.83 31.47 34.23 49 ER7b ExonRegion 0 19.96 9.13 40.95 73.02 14.54 16.25 11.48 16.21 28.84 35.52 19.12 3.96 5.05 20.92 15.47 18.78 15.75 62.86 28.50 33.78 18.68 26.38 23.17 50 E7_Ab KnownBoundary 0 43.27 17.96 38.70 76.45 31.15 26.12 23.14 13.60 37.59 32.13 24.27 12.60 0.00 9.24 10.51 14.61 36.93 58.70 46.02 44.74 11.18 31.78 15.79 51 ER7c ExonRegion 0 26.50 13.27 33.30 59.30 15.03 26.47 13.45 20.64 35.96 27.44 29.11 4.65 9.32 29.15 15.18 25.71 29.31 75.03 43.60 41.88 26.25 38.55 36.15 52 E7_Ac KnownBoundary 0 62.97 18.81 51.39 60.00 8.40 9.37 10.29 16.88 26.36 31.08 30.27 5.85 18.83 39.97 5.56 13.76 3.93 47.92 24.00 31.70 19.95 32.03 56.17 53 ER7d ExonRegion 0 25.65 31.02 86.58 88.26 22.41 31.25 16.66 42.63 56.52 68.77 63.77 16.95 40.86 66.29 43.27 58.51 48.85 114.50 39.93 43.37 41.73 47.49 49.18 54 E7b_E8a KnownJunction 0 27.04 27.56 126.31 159.22 14.60 25.84 12.32 55.86 73.23 84.56 69.60 49.07 58.44 63.16 65.39 58.28 30.67 148.98 14.31 49.34 57.02 49.42 71.96 55 ER8a ExonRegion 0 20.87 23.32 119.36 131.36 17.50 32.60 16.92 58.46 75.80 79.91 92.62 13.52 49.21 74.47 68.58 66.46 73.95 147.53 55.85 52.20 62.95 63.67 66.32 56 E8a_E9a KnownJunction 0 34.67 30.78 137.01 156.39 22.67 38.73 19.25 72.58 82.61 112.98 83.34 0.00 20.13 76.46 50.19 46.91 62.55 193.01 53.46 68.71 62.70 42.86 44.56 57 ER9a ExonRegion 0 35.45 34.81 128.84 147.06 28.90 36.00 18.94 59.73 71.52 92.62 83.56 16.22 29.92 77.19 74.06 80.34 65.32 164.47 68.23 53.95 65.79 65.86 70.57 58 E9_Ab KnownBoundary 0 46.16 41.11 130.78 118.47 28.95 23.74 21.73 68.55 72.66 89.93 69.49 12.60 26.30 28.43 62.67 48.28 68.35 163.70 46.31 50.49 45.90 40.72 46.44 59 ER9b ExonRegion 0 25.73 23.84 73.82 83.91 22.34 20.84 14.88 35.39 38.70 55.77 46.48 10.72 21.28 53.45 48.36 41.85 41.74 84.15 35.42 40.89 37.31 36.43 39.06 60 E9_Da KnownBoundary 0 0.00 0.00 1.63 6.76 0.00 2.61 1.99 0.00 1.48 5.26 2.68 0.00 0.00 4.77 0.00 0.00 0.00 2.11 0.00 0.00 2.53 2.45 0.00 61 E9a_E9c KnownJunction 0 0.00 0.00 8.37 7.99 0.00 0.00 0.00 0.00 5.03 11.85 10.27 0.00 0.00 9.48 0.00 0.00 4.77 10.53 0.00 5.82 2.78 6.25 0.00 62 E9a_E10a KnownJunction 0 26.45 22.30 46.86 79.08 38.71 10.96 12.72 26.94 44.85 32.02 29.17 20.26 0.00 21.72 38.07 43.24 45.72 34.45 7.81 14.96 20.88 39.99 22.11 63 ER9c ExonRegion 0 2.09 0.68 3.22 3.86 3.96 1.21 2.69 2.19 4.14 5.18 6.52 0.00 2.54 4.29 4.77 2.46 4.90 4.46 0.52 2.13 2.93 5.81 3.88 64 E9_Ac KnownBoundary 0 0.00 0.00 0.00 5.03 0.00 0.00 0.00 3.90 2.60 5.64 2.05 0.00 0.00 0.00 10.38 0.00 0.00 1.87 0.00 0.00 5.62 8.27 0.00 65 ER9d ExonRegion 0 2.64 1.16 8.99 14.00 1.77 1.21 3.18 5.01 3.61 15.52 11.32 0.00 0.00 8.61 4.75 10.58 10.76 10.68 0.00 8.43 2.60 10.82 9.31 66 E9b_E10a KnownJunction 0 10.30 0.00 8.69 13.52 0.00 0.00 1.68 4.48 2.37 14.51 2.68 0.00 0.00 9.71 0.00 7.26 11.50 4.23 0.00 5.50 5.81 0.00 11.35 67 ER10a ExonRegion 0 20.76 13.64 30.73 38.91 15.42 9.91 11.21 16.43 20.62 22.75 16.05 6.48 8.63 17.76 18.80 13.44 28.71 12.61 14.70 10.83 14.98 20.64 12.12 68 E10_Da KnownBoundary 0 70.38 30.92 20.46 23.44 42.02 2.90 17.27 4.93 15.51 18.86 14.74 13.50 0.00 21.19 10.14 13.24 13.37 17.53 23.91 13.04 9.33 21.31 17.58 69 E10_Db KnownBoundary 0 0.00 0.00 0.00 2.03 0.00 0.00 0.00 0.00 1.68 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70 E10_Dc KnownBoundary 0 0.00 0.00 6.80 2.06 0.00 2.27 0.00 4.23 2.86 2.36 0.00 0.00 0.00 0.00 0.00 4.19 0.00 2.07 0.00 0.00 0.00 0.00 4.35 71 ER10b ExonRegion 0 32.48 14.68 15.66 18.01 20.71 0.32 9.79 3.76 10.20 15.36 7.31 6.02 0.00 15.04 3.53 10.34 8.47 15.26 14.82 10.64 1.92 9.51 8.30 72 ER10c ExonRegion 0 17.23 3.49 9.80 8.57 13.38 3.67 5.11 4.69 6.00 9.99 0.55 0.00 0.00 5.34 0.00 2.97 5.66 8.18 5.92 5.17 0.00 1.79 7.13 73 ER10d ExonRegion 0 0.09 2.96 3.69 1.83 5.58 3.54 1.23 2.74 2.38 3.77 0.00 0.00 0.00 2.48 0.00 1.40 2.50 2.35 0.00 0.64 3.21 1.52 3.23