Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C1orf59 Gene 0 37.85 19.05 18.37 7.54 31.49 85.64 27.71 21.39 33.76 24.40 32.39 8.73 4.53 32.77 35.19 7.75 27.97 13.81 13.36 2.18 7.81 12.61 7.66 2 393851 Transcript 0 2.57 1.02 0.79 0.78 2.68 7.34 1.51 2.10 3.95 2.70 4.42 0.31 0.00 4.64 3.32 0.64 4.24 1.45 1.59 0.00 0.47 1.49 1.68 3 370032 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 370029 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 420055 Transcript 0 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.62 0.00 0.23 0.00 0.00 0.00 0.00 0.98 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 6 402983 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 493676 Transcript 0 0.00 0.00 0.00 0.00 0.00 2.58 0.00 2.38 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 3.83 3.32 0.00 0.00 0.00 1.56 0.00 8 370031 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 483729 Transcript 0 17.77 12.54 0.07 0.03 11.34 13.89 20.24 1.84 1.85 3.54 7.62 13.99 18.56 8.89 12.80 15.39 15.46 1.93 13.12 21.07 5.71 3.67 12.06 10 IG4_AR1 ActiveIntergenicRegion 0 12.79 7.30 14.89 23.00 12.43 6.28 8.28 7.94 5.21 7.51 6.53 31.46 3.60 9.67 8.29 4.52 2.65 2.68 4.85 3.32 0.47 1.14 0.12 11 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER2a ExonRegion 0 1.57 3.59 3.42 0.91 5.27 12.07 6.06 1.49 4.78 4.96 5.42 0.18 0.57 5.03 9.58 2.30 6.45 6.98 1.56 0.00 4.80 2.26 3.43 13 E2a_E4a KnownJunction 0 0.00 2.43 2.54 0.00 0.00 2.38 6.40 2.18 18.58 13.67 4.11 6.30 0.00 5.42 4.45 3.25 17.02 7.79 4.33 0.00 3.03 2.82 12.29 14 ER3a ExonRegion 0 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.62 0.00 0.23 0.00 0.00 0.00 0.00 0.98 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 15 E3_Ab KnownBoundary 0 0.00 0.00 1.69 0.00 0.00 0.00 0.00 2.09 0.00 2.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.39 0.00 0.00 0.00 0.00 0.00 16 ER3b ExonRegion 0 3.25 1.65 2.05 0.52 8.03 29.40 1.42 2.24 1.30 2.02 2.73 0.00 0.00 4.56 3.05 1.08 6.94 4.01 1.10 0.00 5.55 2.98 0.00 17 E3_Ac KnownBoundary 0 3.78 3.16 1.33 0.00 20.63 51.45 0.00 0.00 0.00 0.00 2.68 0.00 0.00 5.47 4.45 0.00 4.30 6.14 0.00 0.00 6.30 3.12 0.00 18 E3_Ad KnownBoundary 0 0.00 0.00 1.45 2.03 17.32 127.14 9.58 4.81 9.35 6.98 7.48 0.00 0.00 25.96 15.58 0.00 13.65 15.50 0.00 0.00 11.80 3.12 0.00 19 ER3c ExonRegion 0 8.47 4.07 3.00 1.36 24.68 138.76 12.50 1.73 4.94 5.61 11.38 0.00 0.00 32.30 18.05 2.97 19.81 7.39 3.19 0.00 12.73 9.95 0.00 20 ER3d ExonRegion 0 4.16 5.33 5.07 0.67 15.82 106.84 13.63 3.83 7.48 12.23 18.76 0.00 2.14 28.78 14.32 0.68 19.20 8.90 6.06 0.00 8.29 6.93 3.26 21 E3a_E4a KnownJunction 0 0.00 0.00 1.83 0.00 3.90 5.74 4.50 1.97 6.13 5.91 7.48 0.00 0.00 7.36 0.00 0.00 7.95 0.00 0.00 0.00 3.09 0.00 0.00 22 E3a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 5.17 0.00 2.22 0.00 2.69 0.00 0.00 0.00 0.00 0.00 0.00 7.67 4.60 0.00 0.00 0.00 3.12 0.00 23 I3 Intron 0 7.74 1.56 1.09 1.73 7.96 17.61 5.85 2.85 5.01 1.74 1.48 0.30 0.00 3.56 2.73 0.51 3.93 0.94 0.54 0.00 0.00 2.13 0.75 24 I3_SR1 SilentIntronRegion 0 7.84 1.58 1.10 1.75 8.07 17.85 5.93 2.89 5.07 1.77 1.50 0.31 0.00 3.60 2.76 0.51 3.98 0.95 0.55 0.00 0.00 2.15 0.76 25 ER4a ExonRegion 0 13.81 6.82 6.45 6.39 20.70 21.21 11.03 10.77 27.78 20.79 37.94 8.27 0.00 27.33 20.48 7.06 31.11 7.28 13.84 0.00 10.97 9.64 2.64 26 E4a_E5b KnownJunction 0 32.08 21.38 14.16 13.19 23.51 54.85 23.19 27.19 41.17 36.24 59.07 5.70 0.00 65.16 49.45 8.29 29.55 13.60 28.61 0.00 10.75 16.66 4.35 27 ER5a ExonRegion 0 5.14 2.03 1.58 1.56 5.35 14.67 3.03 4.20 7.59 5.41 8.84 0.62 0.00 9.28 6.63 1.27 8.49 2.90 3.19 0.00 0.94 2.98 3.36 28 ER5b ExonRegion 0 29.27 25.34 13.86 5.33 27.18 126.36 26.81 26.93 43.53 31.75 31.42 8.79 4.14 39.89 36.83 5.15 34.30 13.87 9.06 0.00 1.95 17.97 8.83 29 E5a_E6a KnownJunction 0 42.08 12.63 13.28 5.83 32.77 201.25 63.68 22.80 29.11 26.73 32.59 18.91 6.82 41.73 31.28 4.02 7.76 8.75 17.32 0.00 5.81 14.14 4.01 30 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 0.00 0.00 0.00 0.00 31 ER6a ExonRegion 0 52.99 30.11 19.10 10.20 43.19 155.03 38.52 27.75 42.53 25.30 51.47 10.57 3.03 47.10 25.57 7.63 26.93 12.13 18.15 0.00 8.46 23.67 10.86 32 E6a_E7a KnownJunction 0 90.61 40.26 21.61 11.29 62.82 155.25 37.14 31.87 41.38 34.11 43.48 12.90 0.00 38.20 64.53 8.72 46.84 14.92 18.17 0.00 11.86 21.80 4.35 33 ER7a ExonRegion 0 48.44 31.80 20.67 8.77 42.32 121.37 35.36 35.35 49.51 26.07 49.58 15.27 6.36 60.04 47.30 6.60 44.06 17.68 18.81 0.00 8.98 13.74 13.90 34 E7a_E8b KnownJunction 0 40.82 35.72 15.85 5.13 45.84 110.62 41.78 27.89 57.52 28.80 54.33 0.00 6.33 69.22 43.14 8.29 72.18 13.51 25.13 0.00 3.15 17.02 8.37 35 ER8a ExonRegion 0 17.77 12.54 0.07 0.03 11.34 13.89 20.24 1.84 1.85 3.54 7.62 13.99 18.56 8.89 12.80 15.39 15.46 1.93 13.12 21.07 5.71 3.67 12.06 36 E8_Ab KnownBoundary 0 3.63 3.16 0.00 0.00 3.82 20.22 2.25 1.56 0.00 5.83 2.26 0.00 0.00 2.47 0.00 0.00 4.58 2.57 0.00 0.00 0.00 0.00 0.00 37 ER8b ExonRegion 0 58.23 29.37 25.79 8.76 69.45 130.01 49.36 34.23 68.82 41.85 64.34 11.71 8.80 73.39 52.51 12.54 54.64 21.76 21.85 0.00 10.61 18.73 13.21 38 E8a_E9a KnownJunction 0 92.16 46.50 32.61 15.18 79.54 149.18 49.95 36.97 71.15 50.26 87.23 0.00 0.00 74.28 47.47 23.07 44.60 39.46 8.56 0.00 18.22 38.21 32.10 39 ER9a ExonRegion 0 80.03 32.03 45.24 18.13 54.21 194.74 49.02 41.41 66.43 55.71 69.57 18.73 3.01 65.00 69.03 13.85 49.59 29.15 18.94 0.66 10.93 24.86 14.65 40 E9_Da NovelBoundary 0 74.01 15.98 39.50 21.98 27.50 133.62 39.53 46.09 60.85 35.91 36.54 5.40 5.84 32.20 19.78 3.50 45.72 34.32 8.19 0.00 2.72 31.11 11.61 41 E9b_E10a KnownJunction 0 3.78 3.03 0.00 0.00 0.00 8.06 2.08 0.00 1.27 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 E9b_E11a KnownJunction 0 92.61 52.10 47.51 28.04 130.98 187.96 65.63 52.25 78.41 43.76 55.38 6.30 6.33 55.92 74.42 33.07 72.74 53.35 8.75 0.00 17.85 22.78 0.00 43 ER9b ExonRegion 0 85.64 30.03 46.66 23.80 88.51 184.23 61.92 57.57 82.47 41.55 66.46 8.66 4.69 57.97 63.38 26.75 70.59 44.06 12.01 0.00 18.99 34.62 9.26 44 E10_Aa NovelBoundary 0 23.34 22.56 48.58 42.98 29.29 20.33 56.79 60.58 39.67 36.91 9.21 18.91 13.47 2.30 6.30 27.17 16.64 40.87 27.95 45.57 16.19 8.02 10.93 45 ER10a ExonRegion 0 7.46 4.13 0.11 1.11 10.27 11.85 1.95 0.00 0.85 0.10 3.10 3.91 4.24 3.30 10.64 3.13 0.00 0.62 5.24 0.00 1.33 1.14 1.64 46 E10a_E11a KnownJunction 0 0.00 0.00 1.15 0.00 0.00 9.71 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 47 I10 Intron 0 12.90 2.28 1.17 1.95 5.15 5.59 3.82 2.89 3.54 1.37 0.62 0.00 0.00 0.00 1.37 0.00 1.06 0.44 0.00 0.00 1.06 0.33 0.94 48 I10_SR1 SilentIntronRegion 0 13.16 2.64 1.27 2.39 6.41 6.24 3.73 2.39 3.81 1.00 0.42 0.00 0.00 0.00 1.04 0.00 1.44 0.43 0.00 0.00 0.48 0.45 1.28 49 I10_AR1 ActiveIntronRegion 0 12.32 1.30 0.90 0.76 1.64 3.82 4.12 4.33 2.84 2.42 1.19 0.00 0.00 0.00 2.31 0.00 0.00 0.49 0.00 0.00 2.71 0.00 0.00 50 ER11a ExonRegion 0 70.02 23.70 41.50 18.16 76.15 145.38 69.83 43.53 62.34 40.50 65.56 17.67 4.40 56.66 86.45 17.17 50.15 30.13 24.28 1.11 18.01 21.88 5.66 51 E11_Da KnownBoundary 0 64.53 27.43 37.70 17.35 76.74 113.23 75.16 37.99 59.58 44.73 46.64 6.30 0.00 30.90 57.48 12.13 56.38 24.33 29.84 0.00 13.59 10.72 11.95 52 ER11b ExonRegion 0 64.82 36.41 21.84 18.73 40.48 138.51 47.70 37.88 74.13 43.33 54.35 19.02 2.10 43.80 58.80 13.03 52.32 38.94 17.72 0.00 19.90 11.97 8.37 53 E11_Db KnownBoundary 0 138.32 50.25 29.42 23.87 75.72 279.67 53.35 53.19 78.56 51.15 67.60 18.01 0.00 58.10 75.41 34.44 57.97 49.12 31.81 0.00 19.58 19.96 7.85 54 ER11c ExonRegion 0 61.47 25.84 33.33 11.56 38.45 100.27 32.65 33.31 44.05 35.56 34.60 7.06 2.73 33.96 50.11 6.26 29.50 14.86 18.80 0.21 7.29 18.19 6.87 55 ER11d ExonRegion 0 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.25 0.23 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00