Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SLC16A1 Gene 0 13.45 45.59 34.76 36.76 18.47 37.55 32.99 15.73 11.73 32.60 199.20 112.36 117.32 135.47 48.53 88.00 128.00 67.95 42.05 68.68 57.19 51.41 47.28 2 429288 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 1.52 0.00 0.01 0.17 0.00 0.42 0.02 0.00 0.00 0.00 0.00 0.00 0.00 3 369626 Transcript 0 5.06 16.53 9.15 10.09 4.76 10.52 8.57 3.94 2.02 5.98 21.91 11.62 9.61 12.18 9.51 9.50 14.52 9.27 7.67 10.98 7.43 5.69 3.94 4 478835 Transcript 0 0.00 3.56 2.59 4.27 1.89 0.00 0.15 0.00 1.24 3.23 2.28 5.22 2.56 1.62 0.00 0.47 0.45 0.08 0.00 2.71 2.00 1.85 0.13 5 458229 Transcript 0 0.14 0.76 1.10 0.89 0.27 0.74 3.04 0.43 1.14 1.94 4.83 1.08 0.26 1.13 0.72 5.73 4.27 8.42 1.61 5.08 0.30 1.50 1.28 6 443580 Transcript 0 0.65 1.26 1.40 2.50 0.04 0.85 1.23 0.40 0.28 0.27 23.68 5.19 26.63 0.26 1.08 0.92 10.75 0.43 0.49 2.97 0.03 0.64 0.04 7 481750 Transcript 0 3.84 11.72 3.62 14.99 5.03 6.14 10.39 2.91 1.56 4.97 15.92 14.20 28.61 6.15 4.85 9.29 8.11 6.21 2.09 10.90 2.04 6.34 3.87 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 1.04 0.00 0.03 0.33 0.00 0.85 0.04 0.00 0.00 0.00 0.00 0.00 0.00 9 E1_Da NovelBoundary 0 38.45 81.37 109.37 82.14 32.17 108.01 43.94 50.40 36.02 53.54 48.43 25.66 34.09 85.35 64.03 82.97 74.80 105.87 119.53 49.47 40.90 17.64 15.79 10 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER2a ExonRegion 0 1.46 6.63 0.93 0.84 2.32 6.79 6.08 1.51 0.84 3.22 27.89 0.20 0.14 12.02 6.47 9.98 18.49 10.96 9.81 10.58 11.88 2.11 3.29 12 E2_Ab KnownBoundary 0 10.89 20.00 6.77 3.60 11.88 9.88 24.20 9.36 5.03 13.46 89.44 16.36 18.18 23.84 4.45 31.27 52.64 50.95 45.65 46.85 40.96 5.76 8.19 13 ER2b ExonRegion 1 10.89 60.27 14.84 23.24 27.82 98.47 52.16 13.27 9.40 32.46 295.83 30.56 26.27 127.01 50.67 154.02 233.97 190.26 41.49 97.19 155.72 38.21 88.70 14 E2_Ac NovelBoundary 1 6.59 5.66 11.06 11.95 0.00 4.20 4.11 6.78 7.09 18.88 140.93 37.21 19.48 59.74 34.24 22.90 106.03 36.23 4.33 46.85 95.08 15.19 22.62 15 E2a_E4a KnownJunction 1 8.74 15.00 17.44 28.17 0.00 0.00 9.58 18.61 17.82 50.20 763.61 35.41 21.59 194.77 54.76 35.97 528.19 82.78 31.91 131.29 352.32 44.15 22.62 16 ER2c ExonRegion 1 3.17 9.37 10.98 15.24 0.00 1.11 6.43 11.48 11.51 34.12 474.11 23.81 23.28 116.41 41.14 30.78 307.22 59.92 14.79 88.07 222.97 30.96 17.83 17 ER2d ExonRegion 0 0.28 1.53 2.21 1.77 0.54 1.48 1.58 0.87 1.11 2.33 2.76 2.16 0.52 2.27 1.44 4.19 8.54 6.31 3.21 3.65 0.59 0.68 2.57 18 E2_Db NovelBoundary 0 7.26 9.41 1.57 3.30 0.00 0.00 0.00 0.00 0.00 1.29 5.26 5.55 0.00 4.89 0.00 7.60 8.42 2.40 0.00 6.39 0.00 0.00 23.39 19 E2b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 4.50 0.00 1.16 1.56 6.90 0.00 0.00 0.00 0.00 7.26 0.00 10.53 0.00 6.52 0.00 2.33 0.00 20 ER3a ExonRegion 0 1.31 2.51 2.81 3.30 0.08 1.70 2.46 0.80 0.57 0.54 14.08 4.22 19.81 0.52 2.16 1.84 8.88 0.85 0.98 5.93 0.05 1.29 0.07 21 E3_Da NovelBoundary 0 3.78 3.16 9.02 25.40 7.72 0.00 10.20 2.38 0.00 4.35 0.00 0.00 0.00 0.00 4.45 7.78 4.77 0.00 0.00 2.56 0.00 2.88 4.27 22 E3a_E4a KnownJunction 0 0.00 0.00 0.00 1.70 0.00 0.00 0.00 0.00 0.00 0.00 33.27 6.15 33.44 0.00 0.00 0.00 12.62 0.00 0.00 0.00 0.00 0.00 0.00 23 ER4a ExonRegion 0 15.94 74.36 51.55 53.96 37.40 90.76 72.42 33.54 22.24 85.36 566.87 176.38 189.34 369.62 117.91 228.90 366.68 176.47 81.26 204.07 171.64 135.82 125.30 24 E4_Da KnownBoundary 0 3.41 6.18 11.24 11.39 4.33 0.00 2.25 2.26 2.95 6.02 4.84 6.30 6.82 0.00 0.00 3.25 0.00 2.36 0.00 8.88 2.59 2.88 0.00 25 E4a_E5b KnownJunction 0 37.86 95.25 100.14 56.57 19.19 15.96 21.77 30.89 27.95 110.11 545.51 256.43 284.40 403.15 199.64 201.06 405.14 155.57 109.37 262.44 186.57 198.58 119.25 26 ER4b ExonRegion 0 0.00 3.56 2.59 4.27 1.89 0.00 0.15 0.00 1.24 3.23 2.28 5.22 2.56 1.62 0.00 0.47 0.45 0.08 0.00 2.71 2.00 1.85 0.13 27 E5_Aa NovelBoundary 0 13.63 39.66 9.05 21.64 12.56 23.45 10.29 4.07 3.12 7.68 15.27 7.50 26.62 4.59 0.00 0.00 9.07 5.51 0.00 3.07 0.00 6.25 8.02 28 ER5a ExonRegion 1 3.84 11.72 3.62 14.99 5.03 6.14 10.39 2.91 1.56 4.97 15.92 14.20 28.61 6.15 4.85 9.29 8.11 6.21 2.09 10.90 2.04 6.34 3.87 29 E5_Ab KnownBoundary 0 0.00 5.59 14.93 18.58 21.90 9.77 14.35 3.98 0.00 6.74 11.85 17.71 25.97 12.01 0.00 12.05 35.53 7.71 4.14 25.76 6.24 5.94 6.66 30 ER5b ExonRegion 0 28.65 75.17 86.98 88.31 15.79 44.49 47.81 45.24 40.07 119.49 773.97 345.27 374.55 474.47 167.24 267.22 523.78 137.75 131.27 263.13 240.91 228.44 129.93 31 E5_Da NovelBoundary 0 3.63 5.99 6.59 16.75 0.00 2.78 2.25 6.53 3.15 5.02 5.00 0.00 6.82 0.00 0.00 0.00 7.01 16.79 4.33 6.52 5.75 0.00 3.24 32 E5a_E6a KnownJunction 0 23.34 108.40 110.64 90.26 21.05 52.07 76.45 35.53 32.75 116.93 718.87 374.67 376.92 537.41 168.49 294.20 509.21 228.99 137.79 275.16 245.07 254.73 137.78 33 ER6a ExonRegion 0 28.38 102.51 94.26 88.69 22.50 51.48 74.34 36.11 30.79 94.17 677.66 457.00 448.68 524.05 163.11 315.16 497.46 225.08 157.14 246.81 226.49 208.89 179.57 34 ER6b ExonRegion 0 27.64 99.00 76.83 95.78 45.67 90.13 92.03 49.14 33.36 98.62 659.85 381.85 367.02 544.70 153.41 363.34 461.81 290.99 165.82 217.66 216.83 194.94 173.83 35 E6_Db KnownBoundary 0 59.20 126.69 72.14 109.01 82.00 98.01 140.97 54.75 35.91 104.92 794.31 329.66 408.25 368.83 131.41 254.38 461.06 181.98 115.39 232.79 129.05 181.50 147.00 36 ER6c ExonRegion 0 44.82 150.28 105.64 118.29 69.04 130.19 129.04 53.69 41.11 121.22 833.44 495.14 475.23 476.77 138.08 320.39 494.35 200.56 172.38 257.44 136.68 214.19 172.92 37 E6_Dc KnownBoundary 0 27.93 136.88 117.20 124.69 51.19 122.09 112.84 64.08 56.13 95.31 741.92 753.10 615.71 435.75 281.35 328.97 491.82 185.92 172.99 216.17 168.47 224.79 127.19 38 ER6d ExonRegion 0 45.17 153.02 135.97 122.39 76.43 138.26 121.10 49.09 49.96 104.76 709.44 488.76 527.75 512.65 182.01 316.65 408.14 258.19 159.55 221.50 221.63 155.36 186.36 39 E6_Dd NovelBoundary 0 6.37 21.38 20.70 17.55 0.00 10.85 3.89 12.69 2.52 15.45 16.69 23.56 26.78 12.24 0.00 18.97 18.23 21.72 14.02 17.51 2.84 0.00 3.76 40 E6d_E7a KnownJunction 0 54.31 180.43 123.71 115.77 41.43 136.51 84.75 50.03 46.09 83.84 478.86 481.51 428.38 436.46 141.42 224.04 312.95 220.91 95.63 202.17 159.82 115.36 161.08 41 I6 Intron 0 5.24 16.80 9.11 12.32 4.81 13.54 12.68 5.96 3.53 7.50 20.06 29.72 38.97 10.15 7.19 10.91 11.06 9.39 6.48 19.78 1.76 6.65 5.63 42 I6_AR1 ActiveIntronRegion 0 4.21 14.82 10.48 13.89 5.32 18.62 10.82 8.53 6.91 7.55 24.75 16.25 26.37 12.65 11.49 13.12 15.30 17.03 7.03 19.26 1.46 6.89 5.84 43 I6_SR1 SilentIntronRegion 0 6.06 18.88 9.84 13.27 5.21 13.66 14.64 6.20 2.85 8.03 19.83 36.27 44.88 8.64 6.36 9.71 10.78 8.33 6.57 21.95 1.77 7.40 5.05 44 E7_Aa NovelBoundary 1 10.22 34.34 8.07 18.51 17.15 24.47 29.99 8.63 1.79 9.11 24.69 24.61 87.82 9.42 8.90 23.24 28.80 6.05 19.20 29.66 5.81 5.08 3.33 45 ER7a ExonRegion 0 50.87 173.11 152.09 140.34 69.74 137.80 110.02 52.36 31.83 93.63 505.24 310.89 443.62 427.49 181.85 252.31 324.45 203.89 128.86 185.54 141.88 112.44 145.33 46 E7_Da KnownBoundary 1 27.93 58.41 63.07 55.30 16.21 64.00 69.91 23.41 14.35 34.20 212.58 49.97 254.37 195.24 60.20 73.06 162.51 48.42 37.27 92.81 43.61 48.74 39.52 47 ER7b ExonRegion 0 8.67 26.44 17.36 19.34 7.20 14.25 11.07 6.38 3.20 8.73 15.94 23.03 19.07 12.33 12.54 9.02 10.54 7.57 5.53 11.39 2.98 9.28 4.59