Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C1orf162 Gene 0 724.56 22.29 15.27 76.52 107.43 52.13 30.47 39.58 38.49 18.45 6.91 5.62 5.36 17.17 6.29 28.59 5.66 10.82 5.16 14.35 1.14 5.07 3.84 2 343534 Transcript 0 71.73 5.32 3.22 8.19 22.80 22.18 7.11 8.25 6.45 5.51 1.39 0.60 0.93 6.40 2.04 7.20 1.43 3.51 0.48 2.66 0.69 0.97 0.41 3 369718 Transcript 0 409.11 3.03 13.42 22.24 113.41 31.00 34.49 32.74 44.53 13.30 2.21 0.00 6.17 19.19 4.45 68.27 8.88 1.95 0.00 0.00 0.00 3.00 4.10 4 464591 Transcript 0 62.65 14.54 10.35 48.87 29.50 23.44 10.34 16.00 12.17 7.54 3.41 3.06 2.02 5.54 1.49 8.28 2.11 7.43 4.06 7.81 0.18 3.91 3.06 5 IG27 Intergenic 0 7.98 10.30 5.40 25.67 10.75 14.25 10.99 8.66 12.26 7.59 4.14 8.55 9.30 5.07 2.10 2.37 3.56 6.43 5.93 16.97 1.55 4.14 3.08 6 IG27_AR1 ActiveIntergenicRegion 0 3.36 10.74 7.24 22.02 11.99 22.77 18.18 8.17 17.51 12.19 5.11 19.85 17.57 9.27 1.85 4.71 5.23 6.08 5.05 27.55 3.49 8.81 6.21 7 IG27_SR1 SilentIntergenicRegion 0 8.27 10.28 5.28 25.90 10.68 13.72 10.55 8.69 11.94 7.30 4.08 7.84 8.79 4.80 2.11 2.22 3.46 6.45 5.99 16.31 1.43 3.85 2.88 8 ER1a ExonRegion 0 42.79 4.38 1.16 17.18 4.56 19.02 8.03 3.48 4.18 6.94 4.24 2.33 0.00 3.33 2.34 1.94 0.00 8.65 0.08 2.97 0.00 2.46 0.79 9 E1_Ab KnownBoundary 0 89.28 11.31 0.00 49.81 24.02 44.97 22.61 5.38 8.16 9.43 4.63 0.00 0.00 7.30 5.19 0.00 0.00 16.54 0.00 3.26 0.00 5.57 4.35 10 ER1b ExonRegion 0 621.53 11.15 3.65 38.27 80.59 65.19 33.44 14.06 25.52 12.37 3.39 3.79 10.02 18.00 2.65 12.20 4.02 11.61 0.97 7.84 1.40 3.66 4.05 11 E1_Da NovelBoundary 0 21.86 3.29 3.90 54.70 20.54 8.01 1.99 8.63 16.49 7.87 2.37 0.00 0.00 2.12 4.45 0.00 0.00 5.80 0.00 17.64 0.00 2.88 4.35 12 E1a_E2b KnownJunction 0 2353.97 11.84 17.39 46.68 210.70 164.96 74.63 35.57 38.92 22.54 6.69 18.01 6.17 45.56 8.90 43.66 4.11 6.55 0.00 8.82 0.00 5.39 7.85 13 I1 Intron 0 9.25 9.66 3.82 34.72 16.01 13.24 9.05 4.65 9.26 8.44 1.65 7.01 4.77 3.37 2.24 1.13 0.63 3.59 1.82 15.76 0.63 2.37 0.84 14 I1_SR1 SilentIntronRegion 0 9.28 9.69 3.83 34.84 16.07 13.29 9.09 4.67 9.30 8.47 1.66 7.04 4.79 3.38 2.25 1.13 0.63 3.60 1.82 15.82 0.63 2.38 0.84 15 E2_Aa NovelBoundary 0 28.52 12.30 3.08 32.83 27.50 36.51 17.36 3.70 10.36 8.97 4.84 0.00 0.00 8.95 0.00 0.00 0.00 2.57 4.80 19.43 2.66 0.00 8.11 16 ER2a ExonRegion 0 23.07 13.56 5.78 44.86 21.25 18.77 9.79 10.51 11.66 10.36 3.33 3.83 3.27 5.20 1.66 2.47 1.19 6.34 2.24 12.20 0.54 2.87 1.89 17 E2_Ab KnownBoundary 0 53.42 12.76 15.26 23.14 28.69 18.80 2.25 12.86 6.80 22.11 0.00 6.30 0.00 4.94 5.69 3.76 3.55 14.92 0.00 16.81 0.00 0.00 7.85 18 ER2b ExonRegion 0 761.00 16.36 24.04 69.19 100.37 90.56 32.73 40.31 31.64 23.89 9.95 6.08 8.28 23.22 9.01 36.74 15.31 23.90 9.22 22.05 1.97 5.63 11.00 19 E2_Da NovelBoundary 0 31.41 16.71 0.00 17.35 0.00 15.22 10.47 9.12 14.76 11.58 2.68 0.00 0.00 4.89 0.00 0.00 0.00 0.00 12.33 3.00 2.90 2.39 0.00 20 E2a_E3a KnownJunction 0 459.86 8.62 16.41 86.97 49.75 42.87 30.69 30.81 25.09 14.02 10.74 5.85 0.00 16.42 9.64 21.19 7.95 25.74 21.93 16.11 2.47 6.12 4.35 21 I2 Intron 0 52.55 9.06 5.30 22.41 31.99 26.85 9.08 10.57 9.89 7.37 2.19 1.26 2.36 5.74 0.35 1.05 0.93 5.01 2.70 6.92 0.94 2.80 1.66 22 I2_SR1 SilentIntronRegion 0 52.70 9.09 5.31 22.47 32.08 26.93 9.11 10.60 9.92 7.40 2.19 1.26 2.37 5.75 0.35 1.05 0.94 5.02 2.71 6.94 0.94 2.81 1.67 23 E3_Aa NovelBoundary 0 263.08 40.65 8.04 64.23 91.77 50.77 29.94 22.92 17.19 14.56 5.05 0.00 0.00 2.47 0.00 7.01 4.77 4.56 4.80 30.30 0.00 0.00 0.00 24 ER3a ExonRegion 0 330.03 19.93 18.78 83.27 50.15 34.87 31.19 57.26 51.59 30.46 10.91 6.06 9.05 14.20 5.68 17.15 15.04 18.98 12.38 21.31 0.28 4.79 5.20 25 E3_Da KnownBoundary 0 161.44 17.83 13.72 67.26 42.87 32.88 30.16 24.77 24.88 20.60 2.11 0.00 0.00 16.66 4.45 11.45 4.49 18.74 0.00 6.20 0.00 2.45 6.91 26 E3a_E4a KnownJunction 0 186.48 8.88 4.32 39.66 35.65 14.54 10.07 66.21 53.24 31.08 7.32 0.00 0.00 18.84 0.00 19.05 12.34 1.62 0.00 0.00 0.00 2.33 0.00 27 ER3b ExonRegion 0 143.25 26.72 13.60 71.24 60.20 49.38 21.24 25.26 21.27 10.77 6.89 5.36 2.80 11.42 2.81 18.54 5.15 14.08 5.62 11.24 0.00 5.74 3.09 28 E3_Db NovelBoundary 0 289.01 21.31 7.66 55.50 70.12 67.06 17.89 23.17 23.90 11.68 2.53 12.30 6.01 10.30 4.45 3.33 4.77 16.17 0.00 5.94 3.15 0.00 0.00 29 E3b_E4a NovelJunction 0 35.71 0.00 4.35 7.09 7.47 0.00 5.92 0.00 0.00 1.67 0.00 0.00 0.00 2.35 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E3b_E6a KnownJunction 0 21.63 3.35 11.68 30.50 7.05 2.16 0.00 12.24 3.59 1.50 0.00 0.00 0.00 0.00 0.00 3.85 0.00 1.87 4.33 0.00 0.00 3.12 4.18 31 I3 Intron 0 182.87 26.84 15.34 62.56 50.31 39.98 14.03 26.27 17.30 9.91 4.25 7.13 5.19 11.35 8.29 19.02 1.98 12.85 10.19 13.19 1.32 6.25 2.35 32 I3_SR1 SilentIntronRegion 0 184.30 27.03 15.46 63.04 50.70 40.28 14.13 26.48 17.44 9.98 4.29 7.19 5.23 11.44 8.36 19.17 2.00 12.96 10.27 13.30 1.33 6.30 2.37 33 E4_Aa NovelBoundary 0 191.52 14.54 8.84 76.61 47.71 25.38 20.54 36.19 27.08 13.32 4.42 12.45 0.00 14.89 22.87 20.17 3.65 19.36 31.81 33.62 0.00 16.17 3.76 34 ER4a ExonRegion 0 323.45 16.14 21.27 66.77 107.14 44.67 27.12 73.72 54.77 26.89 9.95 7.52 7.75 52.76 11.73 54.16 9.24 22.52 10.26 15.99 3.55 7.59 4.30 35 E4_Da NovelBoundary 0 149.14 15.52 8.46 72.32 50.51 14.65 7.95 33.85 25.26 24.44 9.42 0.00 0.00 4.59 5.19 28.11 3.83 11.11 17.69 15.60 0.00 18.86 7.94 36 E4a_E5a KnownJunction 0 23.71 6.45 6.15 1.73 32.17 31.52 2.21 9.20 4.28 2.47 0.00 0.00 0.00 8.48 0.00 7.35 3.93 0.00 0.00 0.00 0.00 0.00 0.00 37 E4a_E5b KnownJunction 0 409.11 3.03 13.42 22.24 113.41 31.00 34.49 32.74 44.53 13.30 2.21 0.00 6.17 19.19 4.45 68.27 8.88 1.95 0.00 0.00 0.00 3.00 4.10 38 E4a_E6a NovelJunction 0 25.04 13.42 14.19 13.82 8.66 2.44 4.33 1.52 4.05 7.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 18.17 2.49 0.00 0.00 0.00 39 I4 Intron 0 120.09 14.73 6.06 25.13 29.07 32.10 6.39 15.55 9.44 5.16 2.33 5.38 5.49 7.70 6.80 8.09 1.99 8.05 4.81 8.35 2.00 6.92 1.77 40 I4_SR1 SilentIntronRegion 0 121.52 14.90 6.12 25.43 29.42 32.48 6.47 15.73 9.56 5.21 2.36 5.44 5.56 7.78 6.88 8.19 2.02 8.14 4.86 8.45 2.02 7.00 1.79 41 E5_Aa NovelBoundary 0 161.73 5.99 4.67 31.53 32.94 47.76 23.27 15.03 9.64 5.64 2.32 0.00 0.00 14.54 10.75 30.08 3.65 2.57 3.95 5.62 2.97 11.14 3.16 42 ER5a ExonRegion 0 195.03 10.46 5.58 13.86 46.44 32.69 18.19 20.31 17.36 12.65 1.32 0.06 3.70 13.78 5.80 19.51 1.78 5.40 1.84 7.67 2.75 1.43 0.85 43 E5_Ab KnownBoundary 0 349.17 12.56 3.31 32.53 45.67 41.74 6.40 18.03 24.42 24.66 5.37 0.00 6.82 14.48 0.00 27.43 0.00 8.91 8.75 11.76 2.41 0.00 4.27 44 ER5b ExonRegion 0 1111.13 9.34 23.08 53.43 159.40 107.93 40.80 88.05 70.50 27.29 8.60 7.33 23.35 26.68 8.53 79.22 14.35 8.71 3.77 3.60 0.31 5.10 6.59 45 E5_Da NovelBoundary 0 217.08 6.71 15.37 66.13 45.93 21.46 17.22 27.52 14.87 15.96 8.00 6.30 0.00 12.13 4.70 16.15 17.86 9.41 0.00 14.64 2.29 6.00 0.00 46 E5a_E6a KnownJunction 0 2247.51 9.54 27.32 49.51 229.54 154.40 55.25 106.14 79.77 20.98 10.74 12.60 6.49 40.56 4.45 85.87 18.05 5.14 0.00 0.00 0.00 11.82 4.01 47 I5 Intron 0 125.67 16.03 10.35 50.53 32.30 27.11 11.74 15.87 14.98 12.21 4.29 1.07 0.95 5.58 1.01 7.32 3.25 7.47 2.35 9.44 2.71 4.11 1.45 48 I5_SR1 SilentIntronRegion 0 127.33 16.27 10.50 51.24 32.75 27.51 11.92 16.05 15.20 12.39 4.35 1.08 0.97 5.66 1.02 7.43 3.30 7.58 2.39 9.57 2.75 4.17 1.47 49 E6_Aa NovelBoundary 0 514.17 27.23 12.18 126.79 51.36 21.12 16.47 34.54 26.45 22.75 2.11 6.30 6.82 12.36 4.45 8.72 8.98 3.56 22.40 25.63 0.00 6.18 6.49 50 ER6a ExonRegion 0 2393.10 48.00 46.77 200.36 328.47 124.40 79.08 134.01 127.34 45.23 17.58 12.45 8.91 45.54 19.62 96.61 16.19 17.73 12.57 25.31 2.98 10.65 8.36 51 E6_Da KnownBoundary 0 23662.34 259.03 61.80 313.85 2196.27 664.16 509.68 91.51 145.05 43.19 21.01 0.00 0.00 31.49 26.45 330.43 30.11 42.95 38.31 40.01 0.00 42.80 31.50 52 ER6b ExonRegion 0 12999.38 148.40 36.10 177.18 1276.54 384.53 287.47 51.54 82.85 24.79 16.60 5.11 8.66 67.88 35.41 223.90 20.06 29.00 24.18 24.17 0.00 25.22 19.13 53 ER6c ExonRegion 0 25.40 0.00 0.00 0.00 8.03 5.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00