Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ARHGAP29 Gene 0 40.67 21.07 57.15 59.98 34.50 38.86 40.55 23.26 34.12 17.34 0.14 0.49 0.63 0.35 0.89 0.59 0.52 63.51 5.86 13.03 36.76 70.55 35.54 2 370217 Transcript 0 5.68 2.05 7.17 6.57 3.02 4.44 8.51 4.06 4.48 2.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.05 0.00 2.18 5.78 10.15 6.13 3 260526 Transcript 0 82.01 35.82 89.65 108.29 69.51 81.90 68.55 42.30 73.59 32.25 0.00 0.33 0.05 0.00 0.02 0.00 0.00 146.69 10.06 27.30 95.81 133.91 89.11 4 482481 Transcript 0 9.47 7.48 15.31 13.55 7.85 7.65 15.01 7.09 8.73 4.97 0.99 2.57 3.94 2.33 5.93 3.96 3.54 22.79 3.47 7.91 10.17 19.50 13.73 5 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 0.00 0.00 6 E1_Ab KnownBoundary 0 0.00 0.00 3.61 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 7 ER1b ExonRegion 0 2.88 1.38 4.26 2.73 1.62 3.74 6.30 0.51 2.03 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.18 1.42 1.06 19.32 4.93 4.39 8 E1a_E2a KnownJunction 0 0.00 0.00 20.58 15.48 0.00 0.00 0.00 4.19 5.90 10.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38.05 4.05 7.73 80.93 25.23 14.43 9 ER2a ExonRegion 0 7.34 4.90 34.01 37.28 14.56 23.63 26.60 11.84 31.93 14.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85.15 6.20 13.55 49.89 72.96 41.21 10 E2a_E3a KnownJunction 0 27.71 9.47 29.63 41.89 4.16 16.64 23.76 25.59 54.69 10.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41.00 4.61 14.96 31.44 105.14 60.44 11 E3_Aa NovelBoundary 0 0.00 0.00 18.18 6.93 0.00 2.16 4.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.32 0.00 0.00 3.03 0.00 3.50 12 ER3a ExonRegion 0 18.28 12.85 48.30 43.38 22.54 27.24 37.03 15.97 51.12 17.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59.87 6.75 13.11 42.85 105.16 36.11 13 E3_Da NovelBoundary 0 0.00 0.00 21.82 3.56 3.40 2.16 1.68 1.52 3.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 4.35 14 E3a_E4a KnownJunction 0 22.15 5.66 55.17 53.41 54.16 31.46 54.98 18.20 46.24 20.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 94.76 8.47 14.19 45.47 108.38 28.26 15 I3_AR1 ActiveIntronRegion 0 5.34 1.24 20.25 7.66 0.80 1.57 3.92 0.19 1.87 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 0.00 2.05 0.57 0.00 2.14 16 ER4a ExonRegion 0 13.44 10.29 62.06 57.38 30.90 38.30 44.22 25.66 55.61 21.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70.84 11.10 20.90 70.16 123.77 45.84 17 E4a_E5a KnownJunction 0 10.59 17.83 61.12 53.94 22.84 31.40 38.64 25.67 68.58 22.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57.21 23.62 26.59 41.70 109.49 33.89 18 ER5a ExonRegion 0 25.51 14.37 43.44 47.89 19.43 20.72 29.33 22.73 56.82 19.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60.09 9.08 20.14 49.72 110.08 41.68 19 E5_Da NovelBoundary 0 0.00 0.00 17.86 4.73 0.00 5.22 3.53 4.68 1.24 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.23 0.00 0.00 5.44 3.00 3.16 20 E5a_E6a KnownJunction 0 38.30 21.44 35.66 46.21 30.90 49.80 55.78 16.80 31.63 16.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.24 4.52 19.88 71.29 78.01 34.15 21 ER6a ExonRegion 0 37.02 28.22 54.24 64.92 50.62 47.38 41.26 21.59 42.93 19.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64.22 8.00 22.58 65.80 111.79 32.66 22 E6a_E7a KnownJunction 0 38.45 38.22 63.21 78.84 84.64 44.46 53.97 26.90 48.61 20.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57.21 13.55 38.54 44.29 146.10 26.55 23 ER7a ExonRegion 0 21.20 16.30 61.42 74.50 40.83 44.68 60.25 26.21 58.95 27.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74.87 14.22 29.29 47.54 109.76 57.80 24 E7_Da NovelBoundary 0 7.56 0.00 23.45 6.39 12.48 0.00 9.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 9.60 0.00 0.00 0.00 0.00 25 E7a_E8a KnownJunction 0 21.04 18.02 57.89 65.73 8.32 42.25 56.97 24.97 69.50 28.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67.98 9.13 21.92 70.74 152.59 58.30 26 ER8a ExonRegion 0 29.50 21.02 54.18 62.36 32.52 46.27 42.53 22.34 55.41 30.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74.88 16.96 25.50 69.74 116.10 79.02 27 E8a_E9a KnownJunction 0 39.12 26.64 55.11 78.05 53.82 39.81 24.73 19.10 49.85 32.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 81.46 8.75 31.26 56.28 97.36 101.41 28 ER9a ExonRegion 0 51.98 27.99 51.92 61.12 35.36 38.10 57.40 25.30 51.70 28.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60.68 10.10 26.18 55.87 91.60 60.08 29 E9a_E10a KnownJunction 0 50.16 28.02 57.80 66.89 46.26 56.56 58.03 19.47 49.36 22.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65.45 3.67 25.89 59.06 95.46 36.19 30 E10_Aa NovelBoundary 0 2.82 2.50 16.17 12.89 0.00 24.82 10.78 2.46 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.45 0.00 31 ER10a ExonRegion 0 42.85 30.68 65.50 67.49 37.16 65.31 79.90 20.98 69.49 22.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 95.92 5.58 30.10 57.79 101.55 82.37 32 E10a_E11a KnownJunction 0 35.19 31.24 90.09 85.04 26.23 123.22 111.56 33.31 77.78 31.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 114.49 8.00 33.94 109.16 115.00 106.11 33 E11_Aa NovelBoundary 0 6.89 9.14 22.89 12.79 0.00 0.00 9.72 5.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 0.00 0.00 3.15 0.00 7.60 34 ER11a ExonRegion 0 29.71 28.97 71.18 83.24 36.14 73.05 69.66 32.62 73.77 30.36 0.00 1.15 0.00 0.00 0.00 0.00 0.00 125.11 7.21 34.36 87.50 120.35 84.29 35 E11_Da KnownBoundary 0 3.56 6.05 33.77 7.16 15.11 11.58 25.39 1.81 10.16 6.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.33 0.00 23.84 32.99 10.23 31.58 36 E11a_E12a KnownJunction 0 36.75 23.22 44.65 94.49 57.72 88.53 40.72 31.50 59.84 27.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 101.31 0.00 27.87 75.74 125.41 58.39 37 ER11b ExonRegion 0 11.37 4.10 14.33 13.14 6.04 8.88 17.03 8.13 8.97 4.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.62 0.00 4.37 11.57 20.30 12.26 38 E11_Db NovelBoundary 0 10.37 0.00 23.39 11.45 0.00 2.50 21.60 4.15 0.00 2.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.66 0.00 0.00 0.00 10.59 3.93 39 ER12a ExonRegion 0 44.14 22.94 60.06 83.46 49.27 82.07 89.45 34.61 70.73 30.24 0.00 1.57 0.00 0.00 0.00 0.00 0.00 155.10 16.80 29.85 103.46 129.36 92.99 40 E12a_E13b KnownJunction 0 33.19 31.05 52.45 68.22 40.75 68.94 66.11 28.51 71.09 18.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 159.31 4.33 27.80 91.25 106.79 78.88 41 E13_Aa NovelBoundary 0 18.74 5.92 56.00 33.33 3.82 0.00 34.76 5.09 24.74 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.70 8.37 42 ER13a ExonRegion 0 7.61 4.59 11.68 13.43 4.24 7.54 12.19 6.58 10.12 3.09 0.00 0.03 0.00 0.00 0.00 0.03 0.00 16.73 0.78 5.40 10.75 26.32 12.22 43 E13_Ab KnownBoundary 0 15.71 5.26 16.44 38.09 3.74 26.35 10.20 16.06 10.10 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52.44 0.00 9.33 29.71 16.53 10.93 44 ER13b ExonRegion 0 58.40 37.73 57.97 90.15 38.55 82.75 63.12 36.30 77.51 26.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 196.63 16.29 31.86 143.55 156.08 104.15 45 E13a_E14a KnownJunction 0 81.27 31.44 74.21 71.29 62.65 132.54 122.82 42.31 100.40 18.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 192.18 12.71 44.55 116.94 148.49 121.04 46 ER14a ExonRegion 0 58.77 33.58 60.53 94.03 62.15 106.82 106.67 45.52 85.90 31.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 191.41 21.02 34.15 95.42 164.20 109.17 47 E14a_E15a KnownJunction 0 70.38 44.40 97.34 87.14 77.93 123.11 86.21 58.65 85.91 28.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 227.08 25.32 42.89 93.04 255.40 147.17 48 ER15a ExonRegion 0 41.97 22.85 93.64 100.65 63.96 86.61 62.89 58.31 82.33 30.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 225.50 28.97 35.95 141.71 191.43 125.49 49 E15a_E16a KnownJunction 0 80.16 40.26 104.17 127.26 77.16 98.86 85.01 67.32 88.11 37.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 226.09 17.98 31.58 156.17 180.82 154.17 50 ER16a ExonRegion 0 53.60 35.47 93.87 122.45 52.41 100.01 73.47 53.32 79.32 34.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 252.99 21.78 35.12 151.14 172.24 120.43 51 E16a_E17a KnownJunction 0 62.38 28.35 54.26 91.83 43.29 94.60 88.50 59.02 73.49 29.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 183.14 22.97 24.35 191.63 145.74 110.63 52 ER17a ExonRegion 0 69.50 75.61 58.49 97.44 48.11 59.95 67.36 35.12 62.52 34.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 201.29 13.72 24.36 144.25 127.27 97.14 53 E17a_E18a KnownJunction 0 77.12 99.26 57.45 81.44 126.32 74.11 65.54 27.11 67.22 35.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 177.92 11.95 18.47 110.64 121.43 50.36 54 ER18a ExonRegion 0 57.84 77.77 75.32 112.55 60.40 68.37 80.10 35.18 67.13 41.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 88.01 8.93 27.30 58.14 149.53 64.12 55 E18a_E19a KnownJunction 0 101.80 172.01 73.27 118.27 99.07 70.07 76.14 49.37 51.85 50.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44.65 0.00 29.47 39.72 120.45 61.29 56 E19_Aa NovelBoundary 0 25.78 2.63 2.93 3.56 0.00 0.00 1.77 0.00 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 0.00 0.00 57 ER19a ExonRegion 0 88.40 105.10 97.45 130.57 62.22 63.82 83.99 41.46 64.40 48.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44.35 2.05 22.31 29.83 154.83 62.82 58 E19_Da NovelBoundary 0 18.67 3.35 26.58 7.66 11.38 0.00 20.89 2.38 1.79 2.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 3.07 3.09 17.45 0.00 59 E19a_E20a KnownJunction 0 94.54 97.15 83.97 131.85 50.25 65.64 47.70 37.87 59.87 37.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.57 9.41 12.40 31.07 144.14 50.53 60 ER20a ExonRegion 0 88.43 61.74 111.56 139.25 93.13 106.53 100.40 58.57 84.00 38.81 0.00 1.56 0.00 0.00 0.00 0.00 0.00 107.95 7.04 21.69 48.04 176.76 78.63 61 E20a_E21a KnownJunction 0 63.05 37.49 59.93 85.64 90.15 144.69 124.63 28.05 75.95 21.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 136.88 12.80 32.85 72.96 115.92 84.34 62 ER21a ExonRegion 0 81.80 36.91 92.66 105.19 74.69 112.59 85.86 56.75 77.36 29.14 0.00 1.15 0.00 0.00 0.00 0.00 0.00 184.45 12.46 21.00 109.43 145.81 97.28 63 E21a_E22a KnownJunction 0 131.80 28.42 130.42 143.04 119.19 164.39 120.21 56.89 87.56 37.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 198.77 32.00 13.81 118.86 164.53 99.28 64 ER22a ExonRegion 0 123.05 32.41 147.01 138.95 102.32 113.07 86.80 78.41 91.18 43.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 177.45 19.49 25.81 132.59 159.17 100.38 65 E22_Da KnownBoundary 0 3.33 0.00 24.42 10.49 8.66 0.00 6.45 1.85 6.57 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.65 0.00 0.00 2.72 5.08 3.67 66 E22a_E23a KnownJunction 0 183.51 55.98 134.86 143.94 106.62 82.45 63.46 65.27 101.01 45.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 200.30 17.79 31.45 150.55 178.62 161.85 67 ER22b ExonRegion 0 11.33 10.37 18.95 13.67 11.47 7.76 17.83 7.59 7.34 6.85 1.97 5.11 7.88 4.65 11.87 7.90 7.08 28.84 6.17 10.41 9.60 12.67 15.24 68 E22_Db NovelBoundary 0 3.41 5.59 14.87 22.54 0.00 5.05 20.40 4.03 4.25 4.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46.76 0.00 3.26 0.00 19.96 15.11 69 I22_SR1 SilentIntronRegion 0 4.90 4.85 6.02 9.69 6.38 3.34 6.41 1.63 0.77 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.28 0.89 0.15 9.12 6.87 3.09 70 E23_Aa NovelBoundary 0 21.93 0.00 1.54 0.00 7.39 0.00 7.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.19 0.00 0.00 6.30 2.57 0.00 71 ER23a ExonRegion 0 112.44 45.92 156.23 151.33 93.20 87.52 83.02 51.63 65.25 40.15 0.00 0.06 0.25 0.02 0.11 0.00 0.00 117.43 11.37 19.53 58.06 129.39 53.43 72 IG33_AR7 ActiveIntergenicRegion 0 10.99 5.91 8.63 9.51 7.44 13.87 13.48 5.71 7.72 4.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69.87 0.42 4.71 16.91 14.51 14.26 73 IG33_AR6 ActiveIntergenicRegion 0 18.21 0.25 9.73 13.96 7.22 5.06 5.94 5.45 10.67 7.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61.76 0.00 6.45 20.37 21.97 18.95 74 IG33_AR5 ActiveIntergenicRegion 0 10.47 9.49 6.18 14.97 5.17 8.90 8.10 5.16 13.27 6.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52.50 0.00 5.56 12.14 27.42 3.64 75 IG33_AR4 ActiveIntergenicRegion 0 8.78 10.05 14.60 21.66 8.75 11.37 12.86 6.38 14.53 7.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.47 0.53 2.95 2.92 24.27 6.61 76 IG33_AR3 ActiveIntergenicRegion 0 23.87 13.38 26.27 22.82 14.75 18.12 9.66 6.67 8.84 3.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.18 1.82 4.28 8.09 16.53 12.01 77 IG33_AR2 ActiveIntergenicRegion 0 18.05 8.16 23.36 20.23 8.20 11.78 7.02 4.82 7.08 3.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30.95 0.28 7.94 8.69 12.56 5.23