Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LRRC39 Gene 0 13.56 9.74 8.50 28.98 18.86 20.23 9.07 10.69 22.10 8.65 3.39 4.47 3.80 2.48 8.16 4.51 4.45 2.30 4.94 9.69 3.57 6.32 3.57 2 370136 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 370138 Transcript 0 0.00 0.00 4.37 2.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.00 2.51 0.00 4 442964 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.57 1.48 0.00 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 342895 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 370137 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 ER1a ExonRegion 0 1.33 1.28 0.00 0.10 2.48 0.00 5.28 0.26 1.16 3.89 0.00 0.00 2.95 4.57 2.58 0.04 2.08 0.00 0.00 2.68 1.39 0.10 0.00 8 E1_Da NovelBoundary 0 3.04 0.00 1.36 9.89 7.13 27.37 0.00 6.37 12.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.79 1.62 0.00 6.52 0.00 2.51 4.35 9 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 4.33 0.00 4.24 0.00 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E1a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 I1 Intron 0 1.58 3.50 2.93 17.07 6.80 5.76 4.40 4.14 14.78 3.38 2.17 6.11 7.03 2.28 2.31 1.89 2.47 0.86 3.57 7.15 1.89 5.60 1.87 13 I1_AR1 ActiveIntronRegion 0 1.47 2.37 2.26 14.44 5.37 9.69 4.21 5.18 14.61 3.37 2.45 7.29 7.06 1.74 1.08 1.17 1.75 0.59 3.42 8.36 2.09 4.65 2.80 14 I1_SR1 SilentIntronRegion 0 1.65 4.12 3.31 18.53 7.58 3.61 4.51 3.57 14.89 3.39 2.01 5.47 7.02 2.59 2.98 2.28 2.86 1.01 3.65 6.50 1.79 6.13 1.36 15 E2_Aa NovelBoundary 0 7.56 3.29 8.87 4.13 10.78 2.84 2.25 9.04 14.99 4.19 0.00 0.00 0.00 2.12 0.00 0.00 0.00 2.57 0.00 8.76 0.00 3.00 0.00 16 ER2a ExonRegion 0 2.54 0.00 0.00 3.61 4.62 0.37 1.75 3.11 0.19 1.12 3.67 0.54 3.75 1.46 1.60 5.20 0.00 0.00 0.00 0.00 0.00 2.19 3.89 17 E2a_E3c KnownJunction 0 7.56 0.00 0.00 10.19 4.07 0.00 2.08 8.87 4.34 1.26 4.63 0.00 6.66 2.18 4.45 7.86 0.00 0.00 0.00 0.00 0.00 0.00 7.85 18 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.13 2.96 0.00 0.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER3b ExonRegion 0 0.11 0.66 0.03 2.15 2.34 0.46 1.39 3.59 2.53 2.95 0.10 2.81 0.12 0.04 0.07 0.15 0.00 0.00 0.00 0.00 0.00 0.26 0.15 20 E3_Ac KnownBoundary 0 0.00 2.83 0.00 6.59 4.33 0.00 1.63 4.68 4.89 7.33 0.00 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER3c ExonRegion 0 11.92 8.63 3.79 29.69 17.53 23.48 6.54 13.38 18.01 5.70 6.47 6.52 3.95 2.49 3.50 3.47 3.46 2.28 2.38 9.34 1.61 8.03 2.30 22 E3a_E4a KnownJunction 0 10.52 9.80 6.36 34.03 19.19 27.71 15.24 14.87 24.91 0.00 15.11 6.30 6.82 2.30 17.18 4.02 3.65 2.20 21.74 5.62 2.78 15.00 0.00 23 ER4a ExonRegion 0 12.70 8.38 5.60 26.04 25.97 32.58 7.39 13.50 24.41 3.85 7.73 6.66 0.75 5.04 6.08 4.09 7.72 5.18 10.40 10.02 7.15 9.04 1.66 24 E4a_E5a KnownJunction 0 19.56 14.87 9.88 23.84 15.70 17.77 11.92 12.65 31.63 5.53 9.58 0.00 0.00 2.35 0.00 8.12 14.03 0.00 4.24 14.57 10.69 15.86 0.00 25 ER5a ExonRegion 0 14.13 8.25 14.69 34.36 28.21 22.18 12.90 14.25 28.84 5.60 3.79 3.97 2.39 2.03 7.74 6.13 10.87 2.66 9.80 11.67 8.17 7.19 6.17 26 E5a_E6a KnownJunction 0 17.11 5.92 21.35 44.18 32.94 26.12 10.42 9.82 28.15 2.95 2.68 0.00 0.00 2.47 4.45 0.00 11.41 2.11 13.74 3.13 2.59 6.25 4.18 27 ER6a ExonRegion 0 14.89 5.80 15.02 34.26 21.62 17.72 5.96 9.27 31.75 7.70 2.62 1.33 1.64 0.82 12.37 1.19 11.59 0.40 10.35 7.53 4.34 5.32 4.24 28 E6a_E7a KnownJunction 0 29.19 6.18 10.82 30.43 24.11 12.21 13.03 11.17 23.55 7.95 0.00 12.60 0.00 2.77 4.45 3.59 4.49 0.00 4.05 8.88 5.31 2.33 4.35 29 E7_Aa NovelBoundary 0 0.00 0.00 0.00 13.65 20.03 13.06 6.40 6.82 11.55 24.87 0.00 0.00 0.00 0.00 0.00 0.00 4.77 4.19 0.00 6.07 0.00 0.00 0.00 30 ER7a ExonRegion 0 16.86 13.37 9.85 34.60 17.14 30.41 17.30 11.65 38.95 12.93 2.70 4.71 4.14 3.23 12.76 6.25 5.81 1.96 5.48 9.44 5.80 7.72 2.53 31 E7_Da NovelBoundary 0 0.00 6.64 2.31 14.12 18.51 8.01 0.00 7.60 7.61 25.06 0.00 0.00 6.82 0.00 4.45 0.00 0.00 0.00 0.00 2.36 0.00 0.00 0.00 32 E7a_E8a KnownJunction 0 26.30 12.50 12.42 31.80 24.96 29.87 24.82 16.72 39.12 9.21 0.00 12.90 6.17 2.94 20.27 12.56 4.77 2.32 4.42 9.08 6.30 5.45 0.00 33 ER8a ExonRegion 0 19.26 17.08 14.97 47.50 29.36 21.19 11.41 13.04 39.22 15.55 4.69 4.19 5.76 2.86 10.85 10.39 4.88 2.15 2.69 9.33 5.42 7.67 5.74 34 E8a_E9a KnownJunction 0 7.48 6.51 17.44 51.14 20.46 40.60 16.52 11.21 18.43 15.02 7.42 0.00 0.00 2.47 4.45 4.36 4.11 3.73 8.75 6.20 6.24 14.39 7.77 35 I8 Intron 0 7.79 13.69 4.60 17.77 13.31 10.16 6.67 5.46 5.12 11.44 0.64 3.96 3.88 2.42 3.02 0.79 0.55 1.71 1.80 8.33 0.15 0.97 0.78 36 I8_AR1 ActiveIntronRegion 0 8.64 11.06 9.11 45.11 26.14 28.27 10.80 12.26 10.01 21.31 0.44 13.97 5.25 7.23 9.36 3.37 0.00 4.80 5.05 23.62 0.50 5.19 3.99 37 E9_Aa NovelBoundary 0 22.60 14.67 26.40 82.21 30.98 25.89 9.58 12.45 18.11 52.76 12.95 19.36 6.33 4.30 6.30 0.00 0.00 3.98 0.00 25.38 2.59 8.57 0.00 38 ER9a ExonRegion 0 32.76 34.11 17.65 68.79 47.09 55.71 21.63 23.47 32.95 26.26 5.55 13.79 15.88 6.93 25.41 12.36 1.44 7.68 9.62 37.28 3.34 13.39 10.49 39 E9_Da NovelBoundary 0 39.49 58.54 47.75 132.22 65.96 15.79 39.88 34.34 26.01 51.09 9.84 6.30 6.82 2.47 13.35 3.42 4.11 6.26 9.13 23.97 0.00 11.57 0.00 40 E9a_E10a KnownJunction 0 0.00 0.00 0.00 2.06 3.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 E9a_E11a KnownJunction 0 6.08 0.00 2.81 35.66 11.38 15.73 5.48 14.66 13.34 9.99 2.11 6.45 0.00 0.00 4.45 0.00 0.00 0.00 4.71 3.26 2.72 5.82 4.27 42 I9 Intron 0 55.46 63.31 39.17 110.00 74.35 54.44 37.62 27.98 23.49 58.00 6.21 14.91 17.78 7.50 11.08 5.25 5.83 12.49 10.52 35.43 1.80 11.41 5.05 43 I9_AR1 ActiveIntronRegion 0 30.25 29.06 31.83 73.49 39.98 41.11 23.09 26.02 19.79 38.99 6.08 10.28 11.10 5.32 5.66 0.78 5.19 8.56 8.77 24.54 1.16 8.47 3.08 44 I9_SR1 SilentIntronRegion 0 68.93 81.59 43.14 129.59 92.72 61.63 45.41 29.09 25.51 68.21 6.30 17.40 21.35 8.67 13.98 7.62 6.18 14.60 11.48 41.28 2.14 12.99 6.10 45 E10_Aa NovelBoundary 0 181.66 471.03 87.70 332.59 248.73 190.06 232.91 77.59 38.31 160.10 45.17 146.45 167.20 65.10 59.09 41.01 44.04 8.71 21.46 77.98 0.00 51.44 48.83 46 ER10a ExonRegion 0 0.00 0.21 2.67 2.28 1.53 0.51 0.06 0.13 0.15 0.07 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.09 0.31 0.00 0.98 0.09 47 E10_Da NovelBoundary 0 39.12 132.15 48.43 165.55 70.80 81.09 70.44 40.83 15.25 67.91 22.16 24.16 40.74 23.72 17.92 19.74 16.64 3.27 17.22 22.43 0.00 19.10 19.89 48 E10_Db NovelBoundary 0 63.57 87.55 89.56 142.04 135.82 110.73 73.00 18.94 19.59 75.46 9.21 44.71 35.87 21.48 16.44 24.27 20.57 4.19 7.72 26.40 0.00 28.41 8.02 49 E10b_E11a KnownJunction 0 0.00 0.00 5.06 2.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 50 ER10b ExonRegion 0 0.00 0.00 3.68 2.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 2.08 0.00 51 E11_Aa NovelBoundary 0 149.14 182.53 127.20 354.70 119.35 137.76 72.03 88.39 59.06 221.85 47.01 159.20 227.10 72.46 70.34 62.38 88.83 23.92 17.04 58.61 15.32 85.60 29.36 52 ER11a ExonRegion 0 9.92 2.56 3.21 12.14 3.57 4.93 3.98 5.64 8.23 4.96 0.34 2.49 0.80 0.01 3.14 0.62 0.00 1.34 1.61 2.80 0.80 3.55 1.41