Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CCDC76 Gene 0 75.79 166.32 84.47 197.06 113.55 107.06 94.58 52.93 40.47 128.84 46.01 143.63 119.15 73.59 49.35 46.76 53.77 27.01 23.11 76.77 18.38 47.72 21.05 2 370143 Transcript 0 1.36 13.02 1.64 19.91 6.95 31.27 15.20 4.46 4.36 8.16 2.76 3.15 0.00 11.62 2.49 3.29 7.41 2.85 5.69 13.98 2.69 3.40 4.20 3 370141 Transcript 0 72.76 115.98 69.27 145.17 100.26 89.91 82.50 40.49 28.10 103.11 44.48 150.31 92.94 68.10 53.32 47.35 70.22 30.45 18.42 59.91 25.62 41.57 24.94 4 482437 Transcript 0 9.32 56.59 18.79 56.83 31.40 41.58 46.94 20.23 25.41 46.21 28.41 89.83 77.65 39.90 13.06 22.97 34.36 18.96 6.89 51.65 4.14 23.18 9.27 5 370139 Transcript 0 22.67 40.78 16.11 23.04 19.86 12.49 28.79 7.64 11.05 36.64 24.64 18.01 48.54 32.49 23.24 24.35 46.47 12.60 13.27 35.67 11.18 11.57 3.33 6 493651 Transcript 0 1.70 13.13 2.56 19.87 6.97 4.18 16.26 2.74 10.09 15.10 5.07 18.63 12.75 5.39 1.28 3.46 6.26 3.59 2.92 10.57 1.79 9.50 3.92 7 ER1a ExonRegion 0 2.72 6.97 2.10 0.00 2.87 16.37 12.20 0.37 0.26 2.70 5.52 0.00 0.00 20.77 4.97 6.58 10.14 3.96 7.05 10.18 2.36 0.74 8.39 8 ER1b ExonRegion 1 12.70 22.37 6.13 0.00 13.38 53.18 34.42 1.73 1.24 3.44 13.53 0.00 0.00 51.97 8.70 23.78 33.01 9.24 15.93 21.28 4.41 6.25 11.75 9 ER1c ExonRegion 1 50.88 53.44 14.97 11.18 37.03 120.48 73.93 6.29 8.97 10.99 37.88 1.21 2.53 90.53 23.09 82.57 47.93 23.02 23.76 48.08 39.80 12.46 27.96 10 E1_Ad KnownBoundary 1 94.02 75.51 26.76 22.54 47.62 161.16 79.23 15.94 17.51 22.59 38.64 0.00 20.94 52.68 21.63 116.38 39.27 85.60 17.51 54.14 51.46 10.59 39.27 11 ER1d ExonRegion 0 22.14 35.28 21.21 29.68 22.72 56.98 44.62 14.05 20.92 46.79 23.74 19.09 27.11 37.42 16.68 45.03 46.34 15.26 11.18 43.85 25.12 7.44 24.20 12 E1a_E2a KnownJunction 1 3.78 15.13 13.22 17.45 3.65 12.66 6.58 11.58 9.52 28.66 36.22 0.00 0.00 5.77 11.99 3.93 48.25 14.51 0.00 15.21 29.90 5.88 8.45 13 ER2a ExonRegion 1 9.68 21.85 27.24 40.25 12.01 28.64 16.68 21.00 20.31 57.61 82.87 39.79 74.34 92.44 13.33 34.53 40.38 34.36 10.10 61.07 42.20 20.35 11.56 14 E2a_E3a KnownJunction 1 0.00 38.55 40.57 68.66 25.30 36.00 25.44 28.59 31.19 82.57 78.65 57.32 139.28 148.45 25.22 85.96 42.92 46.76 34.17 78.75 35.65 44.39 12.12 15 ER3a ExonRegion 1 0.88 28.74 41.68 80.27 42.49 28.30 24.15 32.76 39.76 91.10 63.12 127.04 168.63 113.01 49.62 124.43 59.61 74.49 26.20 94.16 25.56 49.32 34.10 16 E3a_E4a KnownJunction 1 3.78 30.98 51.48 104.35 112.14 55.54 38.47 37.66 50.20 121.87 54.43 143.60 234.08 94.12 73.80 148.42 67.88 100.69 21.65 102.27 19.65 78.93 59.33 17 E4_Aa NovelBoundary 0 0.00 12.56 1.33 17.68 12.99 5.56 8.08 0.00 14.32 12.84 4.11 0.00 26.30 0.00 8.90 4.02 4.39 0.00 0.00 34.32 5.62 0.00 0.00 18 ER4a ExonRegion 0 5.14 47.55 32.89 104.92 92.89 77.49 63.45 31.14 46.33 116.66 68.11 164.86 173.01 83.19 48.22 83.36 47.47 55.99 21.13 97.97 22.77 48.95 37.20 19 E4_Da NovelBoundary 0 0.00 3.09 0.00 21.71 4.07 2.33 32.55 7.06 13.92 10.02 5.05 6.45 0.00 2.12 0.00 4.36 4.77 6.59 0.00 14.64 0.00 5.33 4.35 20 E4a_E5a KnownJunction 0 16.37 55.19 28.65 60.40 70.80 85.35 58.25 21.85 27.05 89.40 68.33 187.41 153.72 73.52 43.27 47.94 53.02 17.74 4.80 90.83 14.33 42.86 21.43 21 E4a_E6a KnownJunction 0 0.00 19.08 1.18 39.82 11.04 46.17 18.20 8.54 8.45 13.62 0.00 6.30 0.00 2.47 0.00 0.00 4.68 1.74 4.33 17.77 3.03 6.06 0.00 22 E4a_E6b NovelJunction 0 0.00 0.00 0.00 8.32 0.00 0.00 7.82 0.00 2.66 1.50 2.68 26.56 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER5a ExonRegion 0 32.35 99.01 37.04 62.44 56.76 87.63 67.86 21.48 33.33 94.85 69.78 255.25 166.50 81.37 44.02 42.84 64.70 17.69 12.10 106.72 20.43 45.72 13.68 24 E5_Da NovelBoundary 1 3.78 13.22 3.67 18.05 0.00 5.79 17.09 4.23 9.43 4.59 14.79 12.15 35.22 19.66 0.00 0.00 23.56 3.40 13.74 34.64 2.78 8.51 3.76 25 E5a_E6a KnownJunction 0 49.79 129.38 35.19 74.78 46.26 59.23 88.59 27.81 38.17 75.72 73.91 237.23 174.34 63.81 48.95 32.13 64.61 11.61 14.02 83.67 22.12 45.13 10.67 26 E5a_E6b KnownJunction 0 22.67 40.78 16.11 23.04 19.86 12.49 28.79 7.64 11.05 36.64 24.64 18.01 48.54 32.49 23.24 24.35 46.47 12.60 13.27 35.67 11.18 11.57 3.33 27 E6_Aa NovelBoundary 0 0.00 23.88 5.35 24.17 0.00 11.41 24.07 0.00 5.01 16.95 6.90 24.61 20.78 12.66 0.00 7.86 9.44 2.11 3.76 43.27 0.00 8.21 7.34 28 ER6a ExonRegion 0 52.08 92.50 42.52 109.79 62.23 111.14 87.44 36.90 49.43 104.64 83.29 254.73 176.37 85.55 55.33 42.30 77.61 18.56 15.70 95.00 27.32 54.90 19.67 29 E6_Ab KnownBoundary 0 72.83 100.84 60.14 145.60 63.58 126.06 88.10 40.29 50.29 123.89 88.55 291.24 294.62 99.12 73.18 58.79 70.97 24.79 0.00 96.83 37.31 67.23 18.78 30 ER6b ExonRegion 0 55.56 94.59 46.51 111.39 58.24 75.30 80.16 38.24 41.78 119.42 79.49 309.69 297.60 131.99 48.37 72.12 117.49 25.44 19.76 121.04 41.53 50.26 18.68 31 E6_Da KnownBoundary 0 17.93 27.43 1.83 39.59 0.00 38.10 24.02 16.51 13.72 33.85 23.53 149.60 86.68 43.56 4.45 20.59 25.62 10.99 0.00 73.44 8.65 13.78 16.13 32 E6a_E6c KnownJunction 1 9.63 29.80 28.44 37.42 33.53 31.00 11.26 15.65 9.06 51.84 32.64 171.51 140.41 36.26 34.86 15.89 77.89 7.71 0.00 23.71 5.62 19.90 12.29 33 E6_Db KnownBoundary 0 10.52 62.23 7.27 32.30 4.07 30.55 46.42 8.13 14.50 37.88 30.85 42.91 6.82 27.14 11.37 0.00 13.00 6.18 8.75 71.78 5.50 7.78 4.35 34 ER6c ExonRegion 1 13.59 46.38 6.17 46.34 1.96 40.48 34.42 15.49 17.10 47.68 26.69 109.74 39.87 38.23 10.38 12.12 24.12 10.66 3.80 83.88 7.54 10.66 10.73 35 ER6d ExonRegion 1 14.96 51.48 8.10 36.18 24.72 24.86 37.09 15.04 22.54 40.10 14.97 73.51 59.92 31.57 5.96 19.91 17.74 11.14 7.25 46.51 3.95 16.45 12.76 36 E6_Dc KnownBoundary 0 27.86 63.15 25.75 32.26 36.67 38.78 39.70 14.87 23.50 31.83 10.11 61.07 59.25 26.13 20.15 18.97 47.41 12.68 4.14 50.49 0.00 18.37 12.21 37 ER6e ExonRegion 0 10.58 51.55 22.42 36.53 39.80 36.49 43.49 24.63 28.90 35.01 25.56 91.35 64.14 32.04 12.69 19.76 36.72 24.90 1.11 40.16 3.42 25.84 7.78 38 E6_Ac KnownBoundary 0 6.59 51.04 11.27 34.39 43.12 24.19 55.56 34.13 26.91 34.46 27.90 88.38 99.67 31.84 8.90 16.15 21.60 22.80 0.00 46.53 2.90 27.31 8.37 39 ER6f ExonRegion 0 42.04 97.65 47.31 97.94 82.29 68.49 75.05 39.82 43.34 105.81 91.40 227.78 148.34 109.94 49.44 56.79 117.27 35.48 16.48 108.36 25.34 46.97 23.77 40 E6_Dd NovelBoundary 0 3.33 15.66 3.31 14.52 4.33 2.56 9.01 2.22 18.78 19.56 0.00 36.16 13.96 12.30 0.00 3.25 8.23 4.44 0.00 33.43 11.74 16.90 16.82 41 E6d_E7b KnownJunction 0 36.97 111.62 53.84 164.75 92.28 117.26 75.92 35.32 47.51 111.10 104.82 246.68 129.05 122.14 81.34 105.36 147.73 53.10 17.04 157.11 24.46 46.11 32.95 42 E7_Aa NovelBoundary 0 16.67 3.09 1.36 28.33 0.00 2.27 8.13 1.93 17.01 24.01 0.00 26.56 0.00 5.47 0.00 0.00 0.00 4.23 0.00 17.32 0.00 6.25 3.41 43 ER7a ExonRegion 0 1.70 13.13 2.56 19.87 6.97 4.18 16.26 2.74 10.09 15.10 5.07 18.63 12.75 5.39 1.28 3.46 6.26 3.59 2.92 10.57 1.79 9.50 3.92 44 E7_Ab KnownBoundary 0 3.33 11.58 4.73 39.52 7.56 4.60 19.39 6.37 8.65 26.08 6.84 17.26 12.66 2.35 0.00 7.78 11.69 1.91 0.00 17.32 8.90 12.12 3.67 45 ER7b ExonRegion 0 35.01 129.70 70.39 155.05 94.84 83.31 86.61 42.01 56.23 133.14 120.86 232.89 150.28 118.24 63.63 90.98 145.42 55.48 23.23 140.19 39.12 59.15 38.50 46 E7a_E8a KnownJunction 0 26.60 131.62 91.51 156.26 127.16 82.00 103.83 49.70 54.51 149.62 101.45 206.32 129.05 128.26 63.54 68.53 137.45 47.38 50.17 142.09 43.24 79.66 45.24 47 ER8a ExonRegion 0 49.67 114.31 73.96 164.98 69.64 56.14 89.41 41.58 43.74 126.89 100.12 167.23 121.00 116.31 55.32 100.38 118.04 51.15 31.43 133.70 25.06 60.53 44.09 48 E8_Da KnownBoundary 1 7.33 68.67 39.89 129.02 23.26 30.04 72.87 17.42 36.02 102.77 23.22 73.37 116.39 78.64 23.36 30.93 63.77 40.50 30.02 105.85 7.97 40.90 19.97 49 E8a_E9a KnownJunction 0 48.16 18.35 18.54 27.57 26.32 13.06 38.24 6.94 2.55 35.75 38.48 117.04 46.10 36.02 20.64 26.49 49.46 8.12 0.00 17.64 5.56 25.66 25.01 50 E8a_E10a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 0.00 0.00 6.82 12.71 0.00 0.00 0.00 0.00 0.00 0.00 2.78 2.76 0.00 51 ER8b ExonRegion 1 18.73 78.62 26.45 104.97 43.51 48.70 56.80 25.17 27.70 69.91 29.89 106.88 80.50 55.54 15.40 35.09 54.16 23.39 21.29 87.92 12.32 27.27 14.34 52 E8_Db KnownBoundary 0 12.67 74.07 25.66 123.89 37.78 41.91 54.89 24.27 30.84 66.73 30.48 126.34 88.47 60.86 19.28 40.33 48.25 19.57 26.64 97.86 2.97 33.74 8.71 53 ER8c ExonRegion 1 8.05 61.64 15.15 77.14 23.00 46.67 50.40 15.84 21.92 57.41 31.25 88.31 91.17 47.76 13.42 26.18 32.00 13.02 12.67 63.14 4.87 20.52 10.77 54 E8_Dc NovelBoundary 0 16.60 11.58 3.22 9.89 3.99 22.88 25.92 1.97 0.00 13.40 21.64 62.72 56.00 28.72 34.49 6.92 21.69 4.15 0.00 10.10 2.41 10.84 0.00 55 I8 Intron 0 34.00 94.27 31.59 118.60 59.29 80.08 62.97 35.08 28.94 75.75 30.21 83.41 93.50 53.64 27.42 32.84 33.20 26.21 21.29 72.30 11.25 27.79 18.18 56 I8_AR1 ActiveIntronRegion 1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.53 9.15 15.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 I8_SR1 SilentIntronRegion 0 21.23 60.18 26.10 87.62 40.04 61.79 49.04 30.58 23.85 59.01 37.81 71.66 66.08 63.40 32.75 45.97 48.85 38.74 27.43 85.57 16.57 26.30 26.03 58 I8_AR2 ActiveIntronRegion 0 43.20 119.00 36.24 142.44 73.50 94.56 74.09 39.27 33.23 89.10 26.80 93.32 113.75 49.27 25.28 26.15 25.00 19.62 18.41 67.15 8.45 29.84 14.12 59 E9_Aa NovelBoundary 0 173.36 258.18 83.88 250.58 85.82 203.41 146.27 32.45 46.87 107.39 34.27 106.83 109.73 29.20 54.52 74.60 40.77 58.20 25.51 87.69 32.99 39.86 38.84 60 ER9a ExonRegion 0 123.60 217.10 105.71 255.58 163.62 177.11 152.39 65.95 53.03 151.71 89.41 169.15 101.90 135.44 69.27 96.10 113.58 80.65 48.63 107.89 58.89 59.75 46.72 61 E9_Da NovelBoundary 0 58.16 198.25 30.96 213.23 76.32 94.95 96.50 44.20 34.00 95.17 23.01 38.11 49.51 43.15 23.24 37.43 38.99 24.04 8.66 69.41 8.53 14.02 15.71 62 E9a_E10a KnownJunction 1 63.94 58.41 57.09 98.46 104.41 80.07 86.82 33.72 26.24 91.63 24.64 128.59 28.08 62.16 72.56 58.53 69.57 37.85 17.32 75.61 46.70 38.94 22.37 63 I9 Intron 0 65.20 218.56 32.50 124.44 90.66 84.75 72.05 43.66 30.24 89.20 13.23 70.43 74.51 28.45 17.52 12.21 10.73 10.55 15.81 36.06 0.00 19.26 7.54 64 I9_AR1 ActiveIntronRegion 0 65.63 220.03 32.72 125.26 91.26 85.33 72.54 43.95 30.44 89.78 13.32 70.87 74.99 28.64 17.64 12.28 10.81 10.62 15.92 36.30 0.00 19.39 7.59 65 E10_Aa NovelBoundary 0 101.72 175.30 66.67 240.93 244.74 159.45 122.42 67.20 65.10 155.07 34.38 127.84 110.87 45.56 24.85 8.63 47.22 14.43 30.12 70.44 8.90 25.53 22.88 66 ER10a ExonRegion 0 118.46 256.25 136.55 306.82 173.43 148.31 123.77 80.20 49.64 184.64 37.21 165.25 148.18 70.62 69.26 39.72 40.62 17.93 26.13 74.70 11.31 63.59 18.33