Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GPSM2 Gene 0 23.51 46.56 23.46 25.56 46.72 62.65 88.75 26.83 17.61 56.80 68.23 45.71 27.66 57.99 23.29 51.43 28.88 77.31 21.37 55.64 74.30 79.09 30.21 2 406462 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.01 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.23 0.11 0.00 3 435987 Transcript 0 0.00 3.35 0.00 2.00 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.42 4.45 0.00 0.00 8.04 0.00 5.88 3.15 0.00 3.93 4 369987 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 264126 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 435475 Transcript 0 0.18 3.63 0.39 0.00 1.40 0.92 4.78 0.73 0.21 3.91 3.91 4.02 0.73 4.20 0.17 4.95 3.57 5.83 0.00 6.94 6.27 5.09 1.20 7 446797 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 7.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 2.69 4.10 8 427626 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 431112 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 441735 Transcript 1 41.26 22.90 19.29 24.26 28.69 16.65 32.23 18.32 16.43 9.23 8.32 20.82 32.32 8.73 13.48 12.66 7.07 6.57 6.52 24.33 4.14 8.52 4.14 11 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.03 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.91 0.43 0.00 14 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.00 15 ER2b ExonRegion 0 0.90 10.68 1.74 1.36 6.54 30.70 26.06 2.24 1.67 7.52 19.38 1.63 0.00 17.78 4.77 9.61 3.03 17.18 7.11 10.85 23.02 10.16 6.54 16 E2a_E4a KnownJunction 1 7.48 13.42 12.51 5.16 28.78 28.62 51.54 12.69 5.50 45.24 42.33 0.00 5.68 38.91 5.07 58.62 4.77 66.91 45.27 60.79 35.71 29.39 36.45 17 E2a_E4b KnownJunction 0 0.00 3.35 0.00 2.00 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.42 4.45 0.00 0.00 8.04 0.00 5.88 3.15 0.00 3.93 18 ER3a ExonRegion 0 0.00 0.00 0.81 0.00 0.79 1.82 3.82 0.00 0.35 2.03 0.69 0.00 0.00 2.30 0.00 2.86 3.15 5.05 0.00 2.09 7.32 0.22 0.94 19 E3_Ab KnownBoundary 0 0.00 0.00 1.63 0.00 0.00 14.48 7.77 0.00 3.10 1.67 0.00 0.00 0.00 2.47 0.00 3.16 0.00 16.08 0.00 5.69 16.25 2.82 8.71 20 ER3b ExonRegion 0 0.65 1.89 1.07 0.00 1.74 5.15 4.88 0.54 1.03 2.22 3.68 1.38 0.00 5.93 1.26 4.85 7.04 11.61 0.00 5.08 13.99 3.56 3.73 21 E3_Da KnownBoundary 0 0.00 9.08 3.55 0.00 0.00 0.00 4.06 2.26 1.62 1.26 19.74 0.00 0.00 4.94 0.00 7.60 12.53 19.11 0.00 15.28 16.99 11.88 7.68 22 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 7.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 2.69 4.10 23 ER3c ExonRegion 0 0.54 4.51 0.36 0.00 3.41 0.94 6.02 2.18 0.29 3.87 6.41 5.76 2.18 7.82 0.52 11.99 3.71 7.72 0.00 9.99 11.50 11.92 2.67 24 E3b_E4a KnownJunction 0 0.00 6.38 0.00 0.00 0.00 0.00 4.50 0.00 0.00 5.83 4.63 6.30 0.00 2.47 0.00 0.00 3.83 4.73 0.00 8.76 0.00 3.12 0.00 25 E4_Aa NovelBoundary 0 0.00 6.71 1.33 4.86 0.00 0.00 6.67 2.01 1.19 5.53 2.63 11.70 6.82 4.83 0.00 19.23 7.85 0.00 0.00 9.46 11.61 7.59 20.91 26 ER4a ExonRegion 0 16.49 20.31 12.95 14.76 44.53 74.33 83.44 29.04 14.65 60.69 88.39 52.98 33.74 71.52 13.57 39.70 32.88 65.33 30.06 58.33 62.55 88.70 28.46 27 E4_Ab KnownBoundary 1 10.96 33.74 10.23 11.92 111.46 52.98 112.08 28.67 16.90 38.09 76.28 108.64 13.47 132.14 14.59 47.94 30.95 38.55 14.31 88.01 100.51 114.81 21.00 28 E4_Ac KnownBoundary 1 22.08 19.67 19.19 8.69 42.11 97.10 98.35 29.08 25.00 61.54 66.65 52.97 21.91 75.70 0.00 62.38 61.71 102.22 9.22 65.45 96.25 80.15 24.76 29 ER4b ExonRegion 1 19.58 35.59 18.46 16.01 92.15 96.73 125.11 40.51 31.57 75.70 102.32 126.10 32.54 147.69 12.51 74.30 59.21 117.68 15.93 99.07 142.41 129.83 31.20 30 ER4c ExonRegion 1 12.97 34.68 27.05 14.30 33.52 83.39 98.62 38.72 28.59 84.72 109.93 64.39 34.11 100.55 13.13 67.39 56.30 139.09 23.86 70.41 128.58 124.41 30.27 31 E4a_E5a KnownJunction 0 9.56 37.56 35.54 15.32 24.53 42.53 105.20 40.29 22.22 83.16 112.77 55.22 81.49 82.82 14.22 39.05 38.43 119.30 30.97 59.63 139.25 118.92 42.00 32 E5_Aa NovelBoundary 0 0.00 9.41 0.00 4.13 0.00 0.00 7.95 2.55 0.00 0.00 0.00 0.00 0.00 0.00 9.27 4.02 13.18 4.56 4.52 6.52 16.25 2.45 0.00 33 ER5a ExonRegion 1 4.76 30.06 28.24 17.85 39.63 44.21 70.36 34.05 21.69 81.02 92.37 81.44 52.67 104.15 18.31 64.44 45.78 151.40 26.57 81.45 160.25 92.59 37.85 34 E5_Da KnownBoundary 1 3.78 22.96 31.99 21.04 53.48 81.54 102.15 29.45 30.44 94.55 125.29 124.54 52.27 177.35 23.73 151.33 91.63 202.38 40.19 114.73 203.25 151.25 43.36 35 ER5b ExonRegion 1 5.00 29.83 44.77 31.84 62.67 80.42 100.81 45.22 27.76 95.61 135.81 87.66 59.00 147.68 18.12 135.94 79.03 225.77 34.58 90.63 210.57 152.34 62.01 36 E5_Db KnownBoundary 0 10.15 38.15 47.04 51.74 112.73 110.79 129.93 54.59 34.37 106.59 156.41 82.38 40.91 147.63 29.79 149.88 49.28 236.12 44.61 91.21 185.64 112.79 52.07 37 ER5c ExonRegion 0 17.05 46.96 34.45 37.78 69.72 82.35 107.44 37.47 25.47 85.61 128.23 105.95 32.12 120.31 28.36 99.71 36.00 187.91 47.54 100.96 167.52 114.67 46.82 38 E5c_E6a KnownJunction 1 24.67 51.24 27.88 34.79 52.97 87.00 150.46 28.79 20.05 86.58 116.61 174.81 19.32 107.48 19.41 77.50 55.26 145.13 47.06 133.91 159.08 119.28 53.86 39 ER6a ExonRegion 0 17.63 45.40 32.16 38.25 51.63 78.81 125.77 44.46 21.66 100.21 140.96 89.42 41.76 108.40 23.94 133.75 54.61 217.45 34.03 102.97 162.22 121.32 66.85 40 E6a_E7a KnownJunction 1 31.78 108.20 19.99 44.92 89.56 85.46 141.23 29.12 26.19 90.63 115.82 48.47 26.46 121.49 45.37 106.04 23.94 164.61 53.55 77.34 160.87 112.49 54.80 41 ER7a ExonRegion 0 18.47 59.37 25.92 37.44 69.33 94.18 146.78 36.14 16.34 86.74 117.88 60.89 29.55 117.80 34.79 102.61 45.59 192.37 32.34 84.48 191.48 122.62 53.72 42 E7a_E8a KnownJunction 0 14.52 60.78 25.75 34.16 80.65 103.01 167.55 35.20 23.03 92.24 93.13 43.96 49.67 148.80 38.94 85.87 51.61 193.84 4.24 88.08 224.25 97.30 114.81 43 ER8a ExonRegion 1 19.43 41.48 23.10 44.89 66.09 72.67 115.77 32.01 31.07 94.89 108.08 30.20 46.84 131.03 38.35 111.54 49.67 248.49 22.26 118.76 203.86 129.58 76.28 44 E8_Da KnownBoundary 1 27.26 64.86 20.40 29.63 62.48 87.22 121.84 33.56 31.11 89.88 119.24 13.95 70.13 79.70 32.76 106.98 54.04 210.91 58.07 115.11 145.55 125.34 73.50 45 ER8b ExonRegion 1 16.42 45.78 19.90 24.96 62.85 72.68 119.67 32.38 25.64 88.14 107.68 29.57 44.50 107.94 45.85 102.57 62.31 197.35 54.93 80.80 160.49 131.01 66.61 46 E8b_E9a KnownJunction 0 16.89 45.52 17.42 24.77 96.35 94.66 151.30 34.79 22.16 91.63 81.86 24.01 21.75 140.39 37.83 86.56 64.33 160.34 42.92 83.41 148.51 148.67 53.69 47 ER9a ExonRegion 0 24.38 72.68 29.99 40.75 64.54 102.49 128.52 42.65 35.35 95.78 123.77 58.93 32.39 124.23 42.04 81.76 60.87 144.06 31.50 105.91 119.74 120.16 63.44 48 E9a_E10a KnownJunction 0 41.04 90.18 40.48 42.29 78.95 91.88 162.74 58.78 32.46 94.18 88.97 103.68 25.49 109.25 78.99 119.20 73.87 160.13 21.74 123.23 112.56 101.34 92.53 49 ER10a ExonRegion 0 29.25 105.03 35.09 44.93 75.64 79.29 133.56 42.71 40.02 92.08 116.31 90.84 42.03 90.76 50.14 89.13 60.81 104.56 48.88 103.83 94.90 132.93 54.42 50 E10a_E11a KnownJunction 1 33.41 128.73 42.07 72.12 116.47 75.64 112.13 69.37 36.20 96.27 95.13 160.85 95.12 88.59 59.09 91.94 42.64 129.91 59.30 98.82 93.41 129.39 46.18 51 ER11a ExonRegion 0 35.59 119.07 46.14 64.83 73.89 101.72 151.33 60.73 33.27 113.33 120.51 125.95 64.93 98.74 43.44 110.24 48.91 108.10 57.10 120.94 112.17 162.78 56.01 52 E11_Da NovelBoundary 1 0.00 0.00 1.60 2.06 8.66 0.00 8.30 1.97 6.05 9.21 0.00 23.41 6.82 2.18 0.00 4.36 0.00 2.28 0.00 3.20 0.00 5.27 0.00 53 E11a_E12a KnownJunction 1 50.82 129.45 36.66 76.08 78.18 115.56 170.87 57.83 29.48 97.54 81.65 150.65 26.62 103.60 68.36 109.03 47.12 114.58 73.23 97.92 69.19 157.13 71.02 54 ER12a ExonRegion 0 41.03 122.34 50.99 68.00 136.22 125.28 201.80 55.56 28.52 110.33 121.53 121.23 59.46 97.80 49.86 88.25 45.10 118.55 43.35 110.85 111.44 171.65 54.96 55 E12a_E13a KnownJunction 0 84.53 175.50 59.13 71.25 72.75 106.30 177.98 61.69 31.19 119.83 145.83 119.14 61.03 112.72 70.71 117.15 65.64 117.15 27.39 110.70 150.37 205.44 58.64 56 E13_Aa NovelBoundary 1 10.15 10.85 2.96 5.63 20.29 8.06 26.67 5.05 6.16 6.82 4.90 6.30 39.93 7.24 10.38 7.26 0.00 1.74 0.00 6.20 0.00 0.00 0.00 57 ER13a ExonRegion 0 61.75 172.96 51.22 58.13 69.90 70.01 137.59 57.38 30.48 117.07 147.87 107.26 58.51 121.04 52.95 133.08 52.48 127.31 38.38 89.89 122.80 189.24 67.54 58 E13_Ab KnownBoundary 0 58.31 190.23 53.25 57.80 109.42 70.13 152.94 63.50 35.30 128.86 145.19 136.24 93.99 110.25 55.26 138.51 37.77 136.34 76.24 111.79 113.05 184.44 73.75 59 E13_Da NovelBoundary 0 6.89 6.05 6.27 9.36 15.20 0.00 28.40 4.60 4.69 4.57 2.16 6.30 21.91 4.89 4.45 13.07 0.00 1.74 4.80 12.34 0.00 14.63 0.00 60 E13a_E14a KnownJunction 0 43.56 142.80 55.82 37.42 62.22 106.87 178.90 48.26 27.95 114.43 136.19 102.33 54.05 130.08 56.00 70.84 55.73 97.50 33.51 90.12 78.70 138.08 48.57 61 ER13b ExonRegion 0 42.33 136.84 50.32 41.94 73.45 79.39 143.46 50.96 31.12 116.24 149.33 110.47 66.72 115.21 57.37 110.64 48.24 117.48 53.95 93.89 90.35 144.50 52.20 62 I13 Intron 0 7.08 5.74 3.79 8.72 13.12 3.98 20.22 6.05 6.07 4.25 2.14 13.53 13.53 2.64 4.71 5.91 4.25 3.01 2.23 8.03 3.13 11.25 4.51 63 I13_SR1 SilentIntronRegion 0 7.35 5.88 3.79 8.65 13.67 3.94 20.93 6.28 6.24 4.26 2.20 14.08 13.78 2.94 4.70 6.19 4.14 3.20 2.17 8.52 3.38 10.69 4.59 64 I13_AR2 ActiveIntronRegion 0 11.32 5.22 1.17 5.51 8.03 1.83 4.55 0.00 3.38 3.44 3.87 15.06 9.38 2.05 8.70 5.94 5.02 3.70 3.19 2.13 0.00 8.52 3.19 65 E14_Aa NovelBoundary 0 45.71 9.27 11.95 11.85 30.65 2.78 22.30 4.11 9.66 15.10 2.47 6.30 6.82 2.59 4.45 12.05 18.42 0.00 4.80 16.36 8.40 27.19 7.26 66 ER14a ExonRegion 0 61.04 129.67 59.27 53.19 126.33 159.94 209.64 48.50 42.71 123.65 152.28 97.74 53.60 97.35 58.34 89.47 53.78 97.37 38.22 97.51 104.31 231.51 56.21 67 E14_Da NovelBoundary 1 0.00 0.00 2.84 10.52 8.66 2.27 15.24 0.00 6.25 3.71 0.00 20.26 43.83 0.00 4.45 3.67 0.00 0.00 0.00 3.07 0.00 6.00 4.18 68 E14a_E15a KnownJunction 0 71.35 124.32 75.66 64.19 126.74 155.99 173.38 48.55 36.69 155.93 160.83 84.48 45.78 79.17 55.88 56.40 64.89 69.56 39.72 81.11 114.72 257.85 61.55 69 I14 Intron 0 5.71 5.48 2.24 7.75 8.57 5.58 15.49 2.96 3.59 3.10 1.39 8.53 18.16 2.05 4.49 4.36 4.67 3.05 2.38 7.67 2.00 2.17 3.69 70 I14_SR1 SilentIntronRegion 0 5.71 5.49 2.25 7.76 8.58 5.59 15.50 2.96 3.59 3.11 1.39 8.54 18.18 2.06 4.49 4.37 4.68 3.05 2.38 7.68 2.00 2.17 3.69 71 E15_Aa NovelBoundary 0 10.15 8.75 8.63 26.64 15.70 5.45 34.36 16.72 7.61 1.67 2.47 18.91 15.10 2.12 0.00 4.10 9.54 3.77 0.00 9.72 3.09 14.45 7.94 72 ER15a ExonRegion 0 81.50 115.21 70.84 73.64 98.82 150.19 224.91 59.20 42.40 138.19 163.74 106.56 64.31 85.41 63.99 92.93 60.45 93.84 25.50 106.41 105.14 194.86 50.16 73 E15_Da NovelBoundary 1 21.41 28.81 13.10 42.75 48.30 19.87 40.85 13.97 13.31 9.64 4.79 24.46 36.36 2.47 19.66 0.00 8.70 1.87 0.00 25.69 0.00 7.35 12.98 74 E15a_E16a KnownJunction 0 90.24 146.16 82.34 76.28 121.14 178.65 224.96 81.08 32.58 149.84 193.68 79.23 36.85 95.65 58.35 89.38 63.11 141.02 30.49 115.50 150.30 194.60 52.67 75 I15 Intron 0 14.42 9.01 8.80 14.73 15.12 10.77 19.43 8.42 8.66 4.65 2.03 11.10 17.74 3.09 6.59 5.76 8.23 5.44 3.35 11.43 3.05 4.15 3.74 76 I15_SR1 SilentIntronRegion 0 14.45 9.03 8.82 14.77 15.15 10.79 19.47 8.43 8.68 4.66 2.04 11.12 17.78 3.10 6.60 5.77 8.24 5.46 3.36 11.45 3.05 4.16 3.75 77 E16_Aa NovelBoundary 1 13.19 30.59 10.11 18.31 11.46 17.15 22.04 6.82 6.28 3.09 0.00 6.75 41.07 5.24 18.54 23.33 8.04 14.80 11.95 12.34 9.08 8.70 31.41 78 ER16a ExonRegion 0 73.07 104.67 66.14 70.09 123.00 159.83 220.61 72.60 39.12 137.89 123.42 77.41 69.24 107.49 64.45 91.62 56.70 146.46 45.99 121.84 163.95 139.86 65.97 79 E16_Da KnownBoundary 1 33.64 18.68 13.87 19.48 50.00 23.51 26.23 20.13 15.91 14.99 11.90 42.61 48.37 8.89 10.26 17.26 3.74 14.26 22.59 11.12 14.64 20.02 6.91 80 E16a_E17a KnownJunction 0 129.87 129.78 71.35 57.93 196.86 155.82 285.95 71.67 27.26 132.13 144.93 35.71 37.17 133.91 64.03 92.54 56.66 190.19 84.80 125.92 171.62 164.60 86.73 81 ER16b ExonRegion 1 41.26 22.90 19.29 24.26 28.69 16.65 32.23 18.32 16.43 9.23 8.32 20.82 32.32 8.73 13.48 12.66 7.07 6.57 6.52 24.33 4.14 8.52 4.14 82 E16_Db NovelBoundary 1 48.53 42.76 11.65 40.32 57.13 4.66 44.83 17.29 20.49 9.97 0.00 12.00 47.07 2.12 14.09 6.58 11.22 4.56 13.84 29.66 2.59 2.94 3.76 83 I16 Intron 0 34.31 63.84 37.88 78.86 64.99 76.74 73.13 58.50 73.37 49.29 10.93 36.49 30.12 10.72 18.22 21.29 18.35 18.56 19.22 34.50 7.67 27.67 22.41 84 I16_SR1 SilentIntronRegion 0 53.73 69.28 47.57 104.86 82.26 100.62 83.87 81.57 93.81 68.60 17.62 24.26 29.64 16.05 24.46 38.03 19.31 30.33 29.73 43.40 11.92 29.33 33.12 85 I16_AR1 ActiveIntronRegion 1 19.46 59.85 30.53 59.09 51.90 58.59 65.08 40.92 57.86 34.57 5.82 46.03 30.59 6.65 13.47 8.46 17.66 9.54 11.19 27.76 4.42 26.48 14.24 86 E17_Aa NovelBoundary 1 22.97 80.58 56.92 132.92 56.11 36.85 93.18 64.81 85.44 98.21 14.16 49.22 54.22 21.96 27.69 12.22 12.16 15.38 16.47 42.82 6.18 21.55 11.18 87 ER17a ExonRegion 0 36.81 48.15 22.15 18.49 52.47 84.12 109.89 27.71 16.98 43.00 35.46 22.44 14.52 37.90 20.48 37.41 13.79 57.97 23.73 44.17 55.05 53.69 24.34 88 E17_Da KnownBoundary 0 40.97 21.18 1.42 2.03 7.98 47.98 65.05 0.00 3.50 0.00 0.00 0.00 0.00 2.88 0.00 0.00 0.00 2.07 0.00 0.00 0.00 0.00 0.00 89 ER17b ExonRegion 0 8.90 5.94 1.45 0.00 1.75 6.15 9.61 0.00 0.62 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.69 0.16 0.00 0.23 0.00 0.22 0.00 90 ER17c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00