Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C1orf103 Gene 0 58.32 98.41 31.51 51.46 60.76 41.11 47.03 35.86 32.43 44.85 99.93 203.42 152.94 73.25 72.17 73.28 84.95 25.01 38.09 46.66 16.33 44.39 30.24 2 485275 Transcript 0 0.00 3.42 0.06 0.43 0.00 4.83 1.56 0.08 0.95 4.48 0.62 0.00 0.00 3.47 2.37 11.89 3.75 6.47 19.69 3.58 5.41 0.57 18.69 3 324843 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 443367 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 369763 Transcript 0 2.12 0.00 3.68 1.36 0.00 0.00 0.00 1.73 0.00 0.00 0.00 0.00 0.00 1.62 8.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 494675 Transcript 0 2.05 0.35 0.96 0.64 1.43 1.75 3.03 2.19 0.34 3.07 6.31 11.09 14.93 2.63 3.01 0.76 1.59 0.39 0.59 1.52 0.08 1.46 0.06 7 ER1a ExonRegion 0 0.00 3.42 0.06 0.43 0.00 4.83 1.56 0.08 0.95 4.48 0.62 0.00 0.00 3.47 2.37 11.89 3.75 6.47 19.69 3.58 5.41 0.57 18.69 8 ER1b ExonRegion 1 16.17 17.33 9.47 16.81 16.82 32.79 21.31 16.92 17.65 34.71 102.74 25.98 20.49 83.37 47.04 141.82 107.99 70.09 106.44 50.98 53.84 46.15 132.98 9 E1_Da NovelBoundary 0 0.00 0.00 6.30 0.00 4.24 8.69 8.66 1.73 2.37 0.00 2.58 0.00 6.33 4.94 0.00 32.73 13.56 7.34 28.24 5.94 2.84 0.00 13.06 10 E1a_E2b KnownJunction 0 3.19 14.67 6.80 19.31 11.46 7.44 16.16 22.51 9.32 24.69 39.59 81.48 33.60 40.50 35.60 80.75 40.95 23.59 9.32 37.58 26.07 13.66 15.19 11 E1a_E3a KnownJunction 0 6.08 2.89 12.21 21.78 30.98 62.75 35.64 9.04 19.13 23.48 65.75 5.55 6.82 39.50 4.45 38.02 26.93 21.93 18.54 28.06 9.27 9.25 23.99 12 I1_AR3 ActiveIntronRegion 0 16.53 4.13 2.31 12.68 2.58 0.87 2.19 6.76 7.53 4.79 8.98 17.22 31.57 4.84 12.01 5.52 6.33 0.80 2.46 8.82 1.04 0.00 3.70 13 ER2a ExonRegion 0 4.10 0.69 1.93 1.27 2.86 0.71 6.06 4.39 0.69 6.13 5.61 22.18 29.86 2.96 6.02 1.52 3.19 0.78 1.17 3.04 0.16 2.92 0.12 14 E2_Ab KnownBoundary 0 6.37 2.83 0.00 1.80 0.00 2.10 0.00 2.14 0.00 6.66 0.00 6.30 6.66 0.00 0.00 0.00 7.95 2.53 0.00 2.56 0.00 0.00 0.00 15 ER2b ExonRegion 0 10.43 12.78 3.66 7.24 4.53 11.79 9.51 5.74 3.19 15.37 22.29 22.86 23.02 22.72 7.19 22.04 14.75 12.33 6.93 11.64 9.41 5.99 7.59 16 E2_Da KnownBoundary 0 23.04 34.73 1.42 1.90 3.99 0.00 7.60 0.00 1.39 0.00 5.37 6.30 0.00 0.00 0.00 3.50 4.30 0.00 0.00 0.00 2.29 0.00 0.00 17 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.78 0.00 0.00 0.00 0.00 7.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER2c ExonRegion 0 34.00 60.66 20.25 38.58 42.84 35.37 33.47 29.07 25.30 37.20 114.25 220.27 172.16 74.44 39.39 75.37 88.69 29.01 31.88 39.94 13.40 37.55 16.32 19 E2b_E3a KnownJunction 0 49.93 64.92 28.92 41.85 38.46 47.76 32.95 6.70 19.76 25.14 75.49 155.30 136.84 51.09 50.44 36.32 87.98 15.01 18.07 53.75 14.21 22.29 15.11 20 ER3a ExonRegion 0 62.78 79.35 53.01 81.57 96.40 78.47 73.76 50.69 61.41 59.95 185.71 288.77 251.03 116.76 102.21 101.31 156.42 30.86 50.51 86.22 23.64 62.08 36.22 21 E3a_E4a KnownJunction 0 100.98 126.10 54.52 94.33 93.63 63.88 75.34 55.82 50.69 67.21 135.24 356.82 183.43 105.95 146.98 103.82 128.38 20.31 47.91 113.07 25.88 50.27 15.37 22 Ix_AR1 ActiveIntronRegion 0 11.68 3.24 2.63 3.12 12.85 7.41 7.45 4.17 1.91 3.52 2.44 22.22 18.02 3.61 9.61 13.78 6.22 1.16 1.90 3.32 0.00 1.07 0.00 23 E4_Aa NovelBoundary 0 27.04 8.75 8.22 7.39 19.78 13.40 8.13 4.07 1.62 9.59 0.00 7.35 32.95 10.42 15.08 13.07 4.77 0.00 4.80 0.00 0.00 0.00 3.41 24 ER4a ExonRegion 0 93.02 123.60 55.63 102.02 127.90 78.37 109.27 57.26 58.86 72.91 153.52 350.68 253.59 114.98 128.78 110.44 145.33 24.36 52.22 72.78 19.91 68.79 40.42 25 E4_Da KnownBoundary 1 139.14 132.81 34.98 79.28 110.95 43.16 114.65 60.42 47.45 85.37 114.92 367.62 89.44 132.50 173.56 101.51 87.80 14.92 47.72 50.75 8.65 80.22 12.12 26 ER4b ExonRegion 1 125.25 244.89 54.34 73.21 88.76 36.84 54.98 55.37 41.70 58.84 59.39 237.75 156.18 59.13 131.45 40.91 48.41 6.91 24.66 48.05 5.94 57.29 14.84 27 ER4c ExonRegion 0 2.12 0.00 3.68 1.36 0.00 0.00 0.00 1.73 0.00 0.00 0.00 0.00 0.00 1.62 8.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00