Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DNTTIP2 Gene 0 70.37 60.40 69.02 88.76 72.31 65.47 76.04 53.45 41.84 72.30 128.93 175.17 112.31 98.91 98.16 74.06 98.29 32.48 41.05 41.63 26.51 59.82 33.53 2 460191 Transcript 0 0.28 0.98 2.19 1.37 2.88 1.15 2.05 0.87 0.76 0.68 1.36 4.38 0.89 1.57 0.86 1.13 1.54 1.41 0.75 0.84 0.68 2.06 1.65 3 359208 Transcript 0 178.62 98.27 292.78 267.23 154.07 138.16 104.75 202.21 102.28 196.15 253.49 318.25 126.13 167.52 289.14 199.52 161.01 32.17 120.66 40.59 53.00 247.69 49.68 4 436063 Transcript 0 22.01 29.91 7.34 13.12 24.69 16.79 42.98 12.44 9.06 13.71 8.84 22.93 23.29 7.97 11.61 14.25 17.01 8.37 15.44 34.15 4.77 8.60 11.02 5 496672 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.05 0.00 0.00 3.15 0.00 0.00 6 470793 Transcript 0 17.24 5.99 7.30 5.60 9.29 6.94 6.49 1.21 3.18 1.77 4.67 9.74 0.35 8.19 9.87 4.26 7.95 1.72 5.32 2.08 2.29 7.28 4.55 7 496535 Transcript 0 26.21 9.16 17.91 14.06 15.67 8.12 13.93 17.85 14.98 10.66 17.31 17.13 12.47 18.35 14.21 17.22 10.27 4.22 9.39 7.91 2.26 12.00 7.66 8 462746 Transcript 0 12.38 0.78 11.72 6.19 7.21 4.01 4.15 6.44 6.57 7.19 6.21 5.65 4.78 3.26 10.55 3.75 2.24 0.30 2.16 0.86 0.46 2.80 0.34 9 ER1a ExonRegion 0 0.64 1.57 3.35 3.32 2.26 1.54 4.76 0.36 0.56 0.26 1.95 12.51 2.66 1.28 0.99 3.09 1.07 1.48 0.48 0.65 0.53 2.97 1.99 10 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E1_Ac KnownBoundary 0 2.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 0.00 0.00 0.00 0.00 5.13 0.00 3.67 12 E1_Ad KnownBoundary 1 167.59 103.73 49.76 76.95 138.20 319.13 216.84 14.50 42.10 84.78 497.39 17.56 59.74 496.32 255.27 341.71 429.64 155.49 71.34 132.69 251.50 89.77 201.03 13 ER1b ExonRegion 1 4.23 2.03 7.35 10.90 5.35 29.34 23.83 1.73 6.18 5.73 30.93 0.00 0.00 16.24 17.41 26.75 29.71 11.09 9.56 6.38 22.04 14.58 11.75 14 ER1c ExonRegion 1 54.32 37.76 31.45 44.79 48.61 134.72 85.04 16.07 22.44 44.46 226.54 9.38 21.73 187.42 94.29 141.57 185.95 71.02 30.58 54.54 113.05 46.95 92.01 15 ER1d ExonRegion 1 121.34 78.92 62.04 77.25 110.76 202.11 142.79 69.79 63.27 127.22 385.87 32.55 37.10 240.35 136.10 300.94 285.72 223.60 110.80 83.27 178.33 76.93 149.66 16 E1_Da KnownBoundary 0 0.00 0.00 0.00 0.00 4.33 2.50 0.00 0.00 1.71 6.07 2.42 6.30 0.00 0.00 0.00 0.00 0.00 2.03 12.52 0.00 0.00 0.00 4.35 17 E1a_E2a KnownJunction 1 19.71 28.68 20.31 22.67 27.33 9.60 1.81 27.97 27.11 38.14 43.70 95.88 85.87 14.54 9.02 61.69 53.76 65.16 12.14 14.83 13.96 18.98 14.94 18 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.05 0.00 0.00 3.15 0.00 0.00 19 ER1e ExonRegion 0 0.20 1.37 3.22 0.78 2.04 1.90 1.40 2.23 1.71 1.78 2.12 0.63 0.00 0.88 1.58 0.31 3.54 2.75 1.78 1.87 1.50 3.21 2.96 20 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER2a ExonRegion 0 51.78 80.46 115.87 129.51 92.96 127.67 91.91 88.19 82.25 150.17 400.75 257.23 175.51 275.89 165.66 220.14 284.04 118.63 84.85 85.60 133.64 134.14 94.16 22 E2_Ab KnownBoundary 0 232.26 108.60 182.81 258.74 225.13 146.68 201.29 169.96 143.00 196.09 447.53 621.20 493.96 406.74 296.31 299.66 342.40 72.92 98.45 93.51 79.63 223.93 93.30 23 ER2b ExonRegion 0 136.29 115.58 154.88 239.39 179.28 198.76 186.08 144.93 133.39 219.84 434.03 700.47 447.50 338.01 224.13 212.18 311.95 75.09 95.06 80.69 58.73 214.37 81.09 24 E2_Da KnownBoundary 0 192.85 102.68 221.75 335.42 215.53 182.91 257.73 168.32 151.56 259.70 387.52 665.02 444.13 336.34 234.25 219.86 348.57 93.52 118.50 93.32 53.75 140.41 116.61 25 ER2c ExonRegion 0 282.77 172.26 255.31 351.59 226.16 205.56 224.53 165.02 139.85 226.41 434.96 601.00 406.83 346.41 347.94 212.89 334.65 101.22 126.43 95.99 60.07 170.36 98.84 26 E2_Db NovelBoundary 0 10.22 0.00 26.08 4.99 3.90 7.33 5.39 6.86 6.25 8.46 0.00 25.81 8.28 0.00 0.00 4.36 0.00 2.28 0.00 2.81 0.00 3.12 0.00 27 E2b_E3a KnownJunction 0 554.69 474.98 295.38 401.88 301.61 210.96 196.74 227.02 154.02 243.07 451.38 659.46 353.55 337.75 552.69 195.59 304.53 127.72 132.43 128.22 86.98 168.76 71.62 28 E2b_E4c NovelJunction 1 7.56 9.14 21.11 8.56 8.23 0.00 0.00 1.81 2.55 6.88 0.00 24.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER3a ExonRegion 0 373.97 355.85 275.26 390.95 195.29 198.22 222.53 179.41 138.38 261.65 438.77 572.19 323.68 301.38 400.57 181.86 301.45 85.77 129.18 85.34 68.29 184.17 75.08 30 E3_Ab KnownBoundary 0 452.90 309.94 288.28 372.31 306.11 311.41 349.99 154.97 122.54 277.86 455.22 525.17 220.60 270.29 352.56 232.08 339.04 50.53 229.28 78.11 46.46 259.69 76.49 31 ER3b ExonRegion 0 405.70 272.18 305.65 378.14 413.28 288.11 354.01 188.64 127.53 286.39 398.75 568.44 275.86 305.56 410.86 207.64 292.50 67.99 162.53 102.56 52.14 232.93 80.82 32 E3_Da NovelBoundary 0 467.79 222.26 216.25 271.36 488.12 250.48 312.94 144.99 98.32 206.60 241.59 457.95 270.60 249.57 353.79 156.37 199.72 57.33 70.59 82.39 39.60 183.64 65.30 33 E3_Db NovelBoundary 0 3.70 0.00 15.73 8.92 8.15 8.29 8.21 8.13 33.74 12.54 14.79 55.67 26.30 16.83 15.20 11.71 4.39 2.57 0.00 0.00 2.41 25.17 0.00 34 E3b_E4a KnownJunction 0 24.37 9.01 6.18 1.56 0.00 0.00 8.04 1.89 3.04 1.29 0.00 12.00 0.00 0.00 4.45 3.42 4.77 0.00 4.52 3.26 0.00 3.12 0.00 35 E3b_E4c KnownJunction 0 534.91 294.55 363.77 446.86 449.49 240.26 327.69 261.52 140.86 285.52 295.86 609.20 475.62 302.31 561.22 318.55 260.87 91.45 115.67 119.40 31.88 189.70 105.94 36 ER3c ExonRegion 0 468.25 278.50 321.63 385.76 470.17 256.38 312.58 227.99 134.27 268.38 320.40 601.80 420.54 312.68 496.53 266.22 270.04 87.37 107.39 114.79 47.75 209.15 100.41 37 I3 Intron 0 22.27 3.91 10.47 9.44 13.19 11.79 15.18 12.06 13.06 17.56 29.53 40.81 34.76 19.31 17.69 19.43 18.00 6.04 10.80 3.27 7.55 21.70 14.06 38 I3_SR1 SilentIntronRegion 1 11.95 5.46 3.74 10.17 18.87 5.79 9.22 3.91 8.99 12.13 17.93 45.80 10.80 16.97 9.66 13.77 18.02 2.09 8.59 1.48 1.48 22.34 3.94 39 I3_AR1 ActiveIntronRegion 0 15.05 0.00 15.50 10.67 6.50 3.29 10.44 8.26 20.66 21.99 23.38 44.05 24.19 12.17 12.53 7.12 7.65 4.55 6.88 1.93 1.08 21.63 3.50 40 I3_AR2 ActiveIntronRegion 0 23.81 3.71 11.37 11.66 9.58 11.93 12.03 12.16 13.38 20.16 31.85 47.58 35.56 20.78 18.91 21.31 19.01 6.94 10.76 3.42 8.99 24.92 14.80 41 I3_SR2 SilentIntronRegion 0 22.87 4.22 10.12 7.81 15.59 12.98 18.24 13.11 12.64 16.03 29.63 35.62 37.40 19.16 18.09 19.73 18.19 5.95 11.36 3.46 7.70 19.53 15.41 42 ER4a ExonRegion 0 19.79 5.61 9.39 9.74 6.49 12.46 7.11 1.73 5.38 2.78 11.96 10.90 1.04 19.67 18.86 5.01 9.54 3.11 11.44 2.99 6.86 18.71 13.65 43 E4_Ab KnownBoundary 0 40.23 29.93 24.25 26.94 30.81 21.92 27.29 12.40 25.38 16.95 20.85 30.46 6.82 26.02 8.78 7.86 12.44 12.68 31.15 20.20 16.37 16.53 7.68 44 ER4b ExonRegion 0 22.11 2.30 10.93 10.62 19.72 10.95 7.07 1.96 4.91 3.74 12.87 11.96 5.18 16.16 8.09 3.60 10.51 3.94 14.92 0.00 2.03 6.20 3.25 45 E4_Da KnownBoundary 0 25.12 2.63 6.09 4.66 4.33 6.47 5.70 5.50 13.98 4.11 9.69 0.00 6.98 4.71 0.00 3.50 4.77 1.66 14.40 0.00 0.00 2.51 4.10 46 E4a_E4c KnownJunction 0 7.56 3.35 6.33 5.49 21.39 8.35 4.33 0.00 1.13 1.24 2.05 6.30 0.00 4.89 6.30 4.36 9.54 2.03 0.00 0.00 0.00 0.00 0.00 47 ER4c ExonRegion 0 26.21 9.16 17.91 14.06 15.67 8.12 13.93 17.85 14.98 10.66 17.31 17.13 12.47 18.35 14.21 17.22 10.27 4.22 9.39 7.91 2.26 12.00 7.66 48 E4_Ac KnownBoundary 0 22.37 11.51 24.78 11.02 35.14 12.66 4.15 14.29 18.23 12.52 12.85 30.61 0.00 16.30 27.94 19.23 0.00 8.42 17.98 12.59 6.05 13.90 28.17 49 ER4d ExonRegion 0 373.96 247.11 454.05 489.39 313.03 215.19 239.22 258.07 161.92 309.75 388.94 727.03 366.17 353.51 561.25 329.22 259.66 115.81 162.15 103.45 73.40 233.18 131.75 50 E4b_E5a KnownJunction 1 458.97 244.10 430.29 427.28 327.25 228.45 254.11 252.52 178.27 337.14 316.66 759.85 371.73 306.96 627.23 221.48 271.34 45.02 152.76 94.66 107.62 233.67 122.50 51 ER5a ExonRegion 0 259.73 266.61 394.25 393.32 358.83 236.83 225.31 267.01 149.17 270.26 380.11 578.78 296.69 318.15 565.38 256.79 256.79 76.21 144.71 78.07 78.45 197.61 97.05 52 E5_Da NovelBoundary 0 6.96 0.00 16.00 11.22 20.20 0.00 8.57 6.70 20.34 11.58 7.32 0.00 0.00 4.59 0.00 3.50 0.00 0.00 0.00 6.46 0.00 2.88 0.00 53 E5a_E6b KnownJunction 1 146.17 182.27 393.90 310.12 257.22 169.33 194.89 262.67 131.31 254.97 324.77 510.32 154.05 290.78 422.28 175.17 241.89 50.20 125.93 62.13 90.44 121.55 74.78 54 I5_AR1 ActiveIntronRegion 0 10.03 2.59 14.80 10.38 9.83 1.58 5.66 9.77 8.75 6.73 10.93 9.50 9.47 3.25 9.21 4.80 4.27 0.40 2.86 2.52 1.38 4.69 3.05 55 E6_Aa NovelBoundary 0 20.82 6.45 10.17 6.79 27.93 5.68 23.36 18.77 7.61 5.78 0.00 0.00 0.00 4.65 13.35 7.86 4.77 2.57 0.00 0.00 0.00 9.06 0.00 56 ER6a ExonRegion 0 12.38 0.78 11.72 6.19 7.21 4.01 4.15 6.44 6.57 7.19 6.21 5.65 4.78 3.26 10.55 3.75 2.24 0.30 2.16 0.86 0.46 2.80 0.34 57 E6_Ab KnownBoundary 0 20.23 0.00 25.72 9.36 10.53 0.00 8.04 5.75 9.75 5.02 5.37 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 ER6b ExonRegion 0 172.33 149.09 269.22 261.74 178.00 112.08 127.11 180.71 97.90 215.59 342.16 368.28 177.15 215.11 400.08 163.47 237.45 55.53 110.61 54.40 66.58 166.07 63.74 59 E6a_E7a KnownJunction 0 0.00 0.00 1.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 E6a_E7b KnownJunction 0 178.62 98.27 292.78 267.23 154.07 138.16 104.75 202.21 102.28 196.15 253.49 318.25 126.13 167.52 289.14 199.52 161.01 32.17 120.66 40.59 53.00 247.69 49.68 61 ER7a ExonRegion 0 8.57 5.71 16.86 11.75 7.14 6.81 4.79 10.12 4.71 10.60 12.70 14.43 6.48 8.04 14.09 9.20 8.33 1.58 6.22 2.33 3.36 13.00 2.24 62 ER7b ExonRegion 1 159.05 90.36 129.69 135.60 98.12 82.52 68.94 94.56 50.43 126.09 162.20 254.73 125.23 112.03 226.74 95.20 116.07 22.78 57.61 29.64 40.10 100.66 37.67 63 E7_Da KnownBoundary 0 0.00 5.72 2.72 11.89 12.56 2.16 3.97 9.78 4.25 22.91 14.06 24.31 6.49 2.47 0.00 0.00 7.85 0.00 3.95 0.00 2.78 0.00 0.00 64 E7_Db KnownBoundary 0 11.11 2.57 11.44 9.66 3.99 4.43 2.12 7.23 0.00 15.28 7.16 19.96 0.00 2.88 5.32 8.37 0.00 0.00 8.85 6.07 0.00 2.69 0.00 65 ER7c ExonRegion 1 12.70 10.17 10.42 33.39 24.08 22.01 11.25 16.42 6.18 42.44 20.30 64.94 4.69 8.12 13.06 13.37 9.90 4.62 6.37 9.57 2.20 6.25 5.87 66 ER7d ExonRegion 0 22.01 29.91 7.34 13.12 24.69 16.79 42.98 12.44 9.06 13.71 8.84 22.93 23.29 7.97 11.61 14.25 17.01 8.37 15.44 34.15 4.77 8.60 11.02