Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FAM73A Gene 0 21.20 32.59 16.67 27.31 42.30 57.80 39.04 28.11 48.74 41.96 10.55 38.87 37.85 19.19 16.31 22.41 21.62 22.53 19.14 20.05 21.19 35.01 28.90 2 443751 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 370791 Transcript 0 16.63 64.27 12.36 33.02 48.43 62.73 42.54 30.08 67.37 57.97 16.27 52.55 57.80 26.16 15.54 25.90 25.08 31.68 21.92 22.98 34.24 53.82 43.60 4 477627 Transcript 0 0.50 0.12 0.66 0.86 0.80 0.88 0.89 1.24 1.62 2.84 0.12 0.00 0.46 1.31 2.01 1.77 2.64 1.80 3.04 1.40 1.06 1.17 0.70 5 476203 Transcript 1 280.23 189.63 1044.26 1211.36 175.18 137.73 271.41 1196.81 1117.60 1033.29 147.88 30.76 43.91 37.06 113.69 321.26 187.97 1822.03 238.35 273.90 146.53 204.71 282.16 6 ER1a ExonRegion 0 13.30 10.60 1.65 2.97 38.41 116.68 48.89 7.16 17.90 12.61 12.21 3.52 2.49 18.31 10.17 40.79 28.86 17.41 24.19 8.32 30.33 28.10 34.38 7 E1a_E3a KnownJunction 0 0.00 3.35 1.80 7.56 20.88 9.77 8.04 7.23 31.39 17.84 0.00 5.85 6.66 2.30 0.00 4.36 8.60 35.65 17.32 3.07 3.15 8.39 8.71 8 ER2a ExonRegion 0 1.51 0.36 1.98 2.57 2.39 2.63 2.66 3.72 3.08 5.71 0.35 0.00 1.38 1.81 1.71 5.30 4.01 5.40 4.98 4.19 3.19 1.05 2.10 9 E2_Da NovelBoundary 0 6.52 0.00 1.83 1.63 0.00 2.27 3.97 3.53 9.40 8.09 0.00 0.00 0.00 2.12 14.22 4.19 0.00 14.18 4.80 3.26 0.00 0.00 8.71 10 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 2.82 0.00 0.00 0.00 2.12 4.33 0.00 3.93 0.00 4.14 0.00 0.00 2.45 0.00 11 ER3a ExonRegion 0 4.60 3.05 6.75 8.70 4.15 12.10 15.54 13.42 29.05 23.31 22.33 18.95 15.67 15.09 10.10 16.14 32.78 16.89 21.24 13.29 43.42 22.90 13.24 12 E3_Da NovelBoundary 0 14.30 0.00 1.69 7.13 0.00 18.23 5.70 9.04 15.74 12.97 0.00 20.26 19.80 0.00 9.89 0.00 3.74 4.19 0.00 8.37 0.00 0.00 0.00 13 E3a_E4a KnownJunction 0 3.11 2.83 10.14 7.46 3.57 13.69 6.40 24.32 55.21 39.49 22.69 6.30 27.92 47.38 24.72 56.65 44.41 17.00 31.06 11.31 19.83 76.73 51.39 14 E3a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E4_Ab NovelBoundary 0 0.00 5.66 5.62 2.53 0.00 2.16 5.03 10.02 23.18 25.55 4.00 5.70 0.00 17.07 5.69 28.80 10.38 11.03 20.52 2.36 4.70 23.27 12.72 16 ER4a ExonRegion 0 2.12 4.07 9.80 6.81 5.35 9.17 15.89 20.74 58.36 40.72 23.68 17.32 24.62 51.97 22.48 52.01 40.44 22.63 32.65 12.77 17.63 61.98 41.11 17 ER4b ExonRegion 0 4.63 11.74 8.12 13.66 21.79 56.68 25.74 16.87 66.87 39.43 13.11 25.62 33.70 24.58 8.82 35.91 29.10 35.41 22.69 16.54 16.88 34.17 32.06 18 E4_Da KnownBoundary 1 10.45 14.80 9.91 24.37 86.67 199.83 95.26 23.91 75.40 42.36 14.69 24.01 75.32 20.07 13.35 12.82 60.59 24.21 25.60 17.51 14.21 40.35 15.79 19 ER4c ExonRegion 0 12.42 26.78 7.32 27.72 73.91 197.24 83.08 22.29 74.51 49.47 18.05 59.88 69.44 13.94 14.09 20.80 38.32 20.11 27.05 20.64 16.14 39.94 30.55 20 E4b_E5a KnownJunction 0 6.15 22.96 7.48 41.69 14.01 106.30 48.58 15.44 70.89 47.12 13.48 49.82 53.57 16.42 22.25 15.98 26.27 25.16 8.56 10.80 16.43 57.31 26.04 21 ER5a ExonRegion 0 15.63 17.22 9.86 35.01 30.55 57.21 40.06 25.44 86.37 52.08 19.23 69.81 50.03 27.20 18.95 28.88 32.38 35.35 27.71 27.00 29.42 62.70 37.56 22 E5a_E6a KnownJunction 0 13.93 31.05 16.59 39.82 38.20 86.88 26.14 44.15 98.23 47.87 18.16 76.22 54.22 46.32 8.90 15.89 38.06 49.12 32.75 26.40 45.16 57.44 62.57 23 ER5b ExonRegion 1 10.46 24.40 10.52 38.08 30.06 78.21 26.25 39.25 95.39 47.09 17.96 73.09 52.14 36.59 11.61 20.63 40.39 42.50 35.79 30.66 44.98 56.13 54.76 24 ER6a ExonRegion 0 12.13 18.53 14.50 31.59 45.49 82.16 39.53 38.05 74.98 46.92 22.97 88.29 51.22 39.66 21.86 32.27 38.13 44.29 26.79 28.98 42.23 60.67 53.62 25 E6a_E7a KnownJunction 0 29.04 31.57 21.50 23.01 72.16 78.14 69.82 22.26 68.60 53.94 35.32 90.18 54.87 25.02 14.09 26.83 43.76 46.84 43.48 34.26 65.79 65.46 65.56 26 I6_SR2 SilentIntronRegion 0 4.23 0.00 4.90 0.00 41.25 1.83 10.59 0.00 0.00 0.00 0.00 8.66 0.00 1.62 0.00 0.00 3.30 0.00 6.37 0.00 6.24 0.00 0.00 27 ER7a ExonRegion 0 13.25 23.78 19.27 23.35 27.52 78.20 39.48 32.67 56.52 52.20 28.50 77.28 40.04 35.32 13.58 33.98 49.24 54.96 29.41 26.26 58.35 47.35 46.35 28 E7a_E8a KnownJunction 0 14.52 22.56 20.05 24.11 50.00 95.57 71.63 33.80 53.59 57.16 40.12 55.82 39.61 47.38 10.01 31.36 66.95 59.15 18.54 37.39 54.06 62.46 40.55 29 ER8a ExonRegion 0 21.44 16.74 16.28 27.08 44.58 88.75 35.31 29.44 65.87 59.30 27.93 59.29 70.50 28.95 25.48 34.90 54.70 80.27 49.91 37.68 52.34 48.69 60.58 30 E8_Da NovelBoundary 0 2.89 0.00 2.48 0.00 4.07 7.84 13.91 4.56 3.99 6.39 0.00 18.91 0.00 2.47 0.00 3.50 4.77 0.00 0.00 0.00 0.00 0.00 0.00 31 E8a_E9a KnownJunction 0 24.30 24.54 4.79 24.74 38.29 95.12 34.67 29.08 68.72 38.36 22.53 49.07 86.52 35.38 24.11 28.54 63.39 66.24 55.72 43.78 68.70 40.66 58.30 32 ER9a ExonRegion 0 17.64 29.17 12.21 21.70 37.91 62.82 38.83 29.38 69.41 46.55 27.25 42.87 49.41 34.73 25.74 31.63 56.70 78.78 27.09 35.41 77.52 45.75 51.06 33 E9a_E10a KnownJunction 0 3.11 23.61 14.13 23.01 25.38 69.56 26.19 35.61 69.65 50.37 31.22 31.51 46.10 28.84 26.08 27.86 44.88 94.60 27.58 32.15 54.55 35.52 54.55 34 E10_Aa NovelBoundary 0 0.00 3.35 0.00 0.00 0.00 2.33 0.00 3.45 6.02 4.41 0.00 0.00 0.00 0.00 0.00 0.00 4.02 3.69 4.80 6.39 9.33 3.12 0.00 35 ER10a ExonRegion 0 14.76 48.65 15.91 28.30 41.42 69.19 33.96 39.89 70.54 51.87 19.26 56.87 49.03 26.55 25.72 32.79 44.49 64.47 32.84 32.90 66.87 59.77 65.91 36 E10_Da KnownBoundary 0 20.97 8.68 5.06 4.13 0.00 0.00 19.03 4.60 1.56 4.59 0.00 12.15 13.15 9.42 0.00 0.00 12.90 7.63 7.53 11.44 2.78 8.82 10.84 37 E10a_E10b KnownJunction 0 7.56 84.46 16.11 42.35 36.67 89.44 30.83 26.90 67.53 40.78 14.53 42.46 81.81 16.78 20.89 22.81 31.14 38.18 8.38 20.01 46.27 53.58 41.15 38 E10a_E10c NovelJunction 0 0.00 0.00 0.00 1.80 8.23 0.00 4.02 5.09 3.04 3.22 0.00 6.75 0.00 4.77 0.00 4.36 12.81 6.47 3.67 5.24 0.00 3.12 0.00 39 ER10b ExonRegion 0 15.50 9.81 2.57 4.60 1.61 2.15 14.23 8.17 3.06 11.44 0.34 6.28 5.86 10.43 0.00 6.98 13.86 5.36 2.47 6.33 4.24 10.11 10.79 40 E10_Db KnownBoundary 0 10.59 16.05 1.45 3.50 4.33 5.17 15.28 9.69 4.69 13.30 2.00 0.00 6.82 9.59 0.00 16.92 13.65 3.69 4.14 3.13 5.93 8.21 8.62 41 ER10c ExonRegion 0 3.61 8.87 5.09 11.25 7.23 9.01 12.17 12.29 6.47 15.73 4.53 10.53 16.31 4.50 0.09 6.27 4.69 4.29 2.82 2.52 1.50 14.88 5.74 42 E10_Ab KnownBoundary 0 0.00 0.00 4.79 11.25 3.57 5.79 6.36 7.56 12.79 11.95 0.00 20.26 0.00 0.00 0.00 3.93 0.00 3.52 0.00 7.54 3.15 2.63 7.17 43 ER10d ExonRegion 0 12.52 67.14 15.57 35.34 42.11 49.72 36.50 39.49 73.32 57.95 17.15 39.99 69.11 16.42 18.25 17.17 22.88 39.75 21.32 24.47 43.16 72.63 46.37 44 E10_Dc KnownBoundary 0 23.86 22.76 10.82 15.52 21.22 14.31 8.88 21.44 24.94 18.37 2.68 25.06 74.35 7.89 5.19 3.85 3.83 14.01 4.80 9.14 8.15 35.15 16.13 45 E10c_E10c KnownJunction 0 12.45 42.10 10.94 24.24 20.54 63.37 68.19 35.36 63.34 64.15 14.74 40.66 57.79 24.96 13.35 7.01 21.13 17.74 17.51 31.38 14.02 53.33 31.41 46 ER10e ExonRegion 0 6.34 6.13 4.80 5.95 5.47 7.99 19.66 7.39 6.66 10.50 1.45 16.20 23.78 4.39 2.19 5.23 3.66 2.77 2.20 4.71 2.38 6.86 7.23 47 E10_Ac KnownBoundary 0 9.26 18.62 9.79 16.41 6.11 19.65 49.51 19.59 29.77 35.08 4.00 25.06 46.26 15.42 0.00 7.43 11.22 4.73 8.28 10.55 6.86 30.43 17.33 48 ER10f ExonRegion 0 15.46 61.48 13.95 35.28 36.90 61.20 59.90 28.92 60.02 71.83 10.27 48.68 55.08 23.97 18.93 21.81 25.98 17.19 17.70 21.82 21.91 62.07 39.23 49 E10_Dd KnownBoundary 0 6.74 0.00 4.29 8.82 4.33 5.05 7.64 2.55 6.63 15.20 0.00 25.21 6.33 2.12 0.00 12.82 12.81 0.00 4.24 2.81 0.00 8.33 3.67 50 E10d_E10d KnownJunction 0 17.93 61.24 16.41 36.99 35.48 25.72 41.07 25.75 58.51 65.81 5.21 40.81 25.81 14.48 19.66 16.32 16.83 17.29 20.05 17.83 16.56 100.91 46.35 51 ER10g ExonRegion 0 2.87 4.80 4.09 6.72 6.35 6.35 9.42 7.60 10.33 8.32 1.63 16.20 12.58 3.84 3.03 4.92 5.01 3.28 3.70 4.97 1.67 7.13 3.91 52 E10_Ad KnownBoundary 0 14.08 5.66 20.49 12.22 4.33 0.00 6.54 5.09 17.36 6.21 0.00 18.91 12.66 0.00 0.00 0.00 3.74 3.86 0.00 5.94 2.35 11.51 15.96 53 ER10h ExonRegion 0 26.43 84.08 26.93 36.45 56.44 48.50 36.90 42.79 80.58 77.32 14.32 62.20 70.49 19.74 17.23 25.20 44.06 18.18 41.73 24.19 30.13 81.34 37.88 54 E10_De KnownBoundary 0 3.19 9.67 9.99 5.83 16.98 7.33 8.66 0.00 0.00 9.78 0.00 6.60 6.82 4.59 0.00 0.00 0.00 3.44 0.00 2.81 3.15 0.00 0.00 55 E10e_E12a KnownJunction 0 14.30 81.76 9.28 26.37 29.29 22.20 16.87 36.31 57.87 57.46 8.90 54.62 47.40 17.13 13.35 12.56 34.03 13.06 17.60 12.53 17.17 42.80 23.05 56 ER10i ExonRegion 0 5.99 6.82 6.21 6.76 9.97 6.15 12.84 7.07 4.29 6.63 2.05 9.20 14.11 6.18 12.24 9.77 8.92 8.53 5.44 7.68 6.57 3.77 9.27 57 E10_Df NovelBoundary 1 776.06 481.56 642.41 755.88 498.47 348.15 657.49 697.23 668.86 582.02 140.56 62.87 56.98 49.62 218.31 435.36 346.80 1354.49 637.01 511.21 337.06 770.32 1009.93 58 E10f_E11a KnownJunction 1 1603.91 1053.89 6235.41 7229.92 973.85 754.40 1489.70 7135.14 6668.42 6148.14 862.96 86.73 132.13 164.58 611.41 1831.83 1044.23 10891.83 1368.70 1551.97 820.34 1172.13 1604.40 59 E11_Aa NovelBoundary 0 451.78 328.36 167.56 174.04 380.73 261.95 379.67 143.96 161.37 148.28 255.59 91.83 111.68 290.60 500.65 626.42 321.27 210.79 406.60 377.05 298.14 320.68 431.08 60 ER11a ExonRegion 0 58.66 57.26 9.98 7.59 48.22 42.47 84.69 11.39 9.44 10.41 14.65 45.69 64.56 38.87 53.17 69.54 61.29 21.46 47.25 71.54 46.73 23.46 62.43 61 E11_Da NovelBoundary 0 17.11 9.08 3.05 5.29 3.99 2.90 7.91 0.00 2.58 1.37 2.63 0.00 19.15 2.41 13.35 0.00 0.00 4.39 4.24 12.72 2.72 2.63 0.00 62 ER12a ExonRegion 0 34.51 90.22 23.74 35.72 60.71 81.33 65.82 44.45 86.12 69.87 18.87 93.64 66.18 28.40 22.84 29.55 36.80 25.31 24.73 31.85 40.60 77.45 44.29 63 E12a_E13a KnownJunction 0 21.26 83.60 11.97 37.66 84.97 98.64 44.96 26.37 75.75 59.90 28.06 70.52 59.25 32.32 8.90 34.95 20.29 37.47 22.40 25.69 39.17 42.50 30.73 64 ER13a ExonRegion 0 12.97 45.76 6.04 30.13 53.66 72.30 23.64 20.61 66.51 51.06 16.36 42.17 51.42 32.93 11.12 34.62 17.73 41.16 15.57 26.32 43.58 40.17 46.66 65 E13a_E14a KnownJunction 0 3.11 55.25 3.19 30.70 41.85 20.90 22.79 13.76 53.38 50.93 18.37 47.72 59.90 9.65 9.64 23.93 24.40 36.93 29.65 18.28 53.13 37.60 76.31 66 E14_Aa NovelBoundary 0 12.67 8.42 1.54 15.48 20.71 16.01 18.11 6.37 8.83 9.99 0.00 6.30 0.00 0.00 4.45 19.48 9.54 12.19 18.07 3.26 6.30 5.39 0.00 67 ER14a ExonRegion 0 14.24 43.64 4.36 34.22 34.83 43.26 34.39 25.59 78.00 59.22 23.53 72.75 49.11 38.51 18.99 36.83 40.94 49.76 34.28 26.82 49.86 58.30 61.95 68 E14_Da NovelBoundary 0 2.96 6.18 1.77 18.41 17.06 16.07 21.33 5.59 7.99 9.97 4.69 0.00 13.64 2.47 0.00 7.69 20.85 5.68 0.00 0.00 8.59 10.84 11.78 69 E14a_E15a KnownJunction 1 9.93 66.44 3.99 16.22 59.85 74.11 62.05 27.64 51.68 47.36 16.95 18.91 86.36 46.32 10.75 38.54 9.16 41.91 25.79 17.19 32.06 31.72 39.52 70 I14 Intron 0 6.75 4.17 4.37 12.96 10.16 12.19 10.86 5.68 11.74 9.09 3.23 13.98 20.09 3.34 4.36 5.08 6.27 2.14 3.27 5.98 2.68 9.02 6.02 71 I14_SR1 SilentIntronRegion 0 7.51 5.98 5.10 15.12 13.18 15.69 11.55 5.16 12.74 9.66 3.30 14.25 26.04 3.57 5.04 5.58 8.78 3.01 4.29 6.63 3.95 8.97 6.72 72 I14_AR1 ActiveIntronRegion 0 7.83 2.47 4.84 14.40 8.67 11.08 12.33 8.56 14.52 11.36 3.25 16.27 10.21 3.59 4.93 4.86 2.89 1.58 2.54 6.47 1.22 11.96 7.16 73 I14_SR3 SilentIntronRegion 0 0.00 2.93 0.00 0.00 4.79 1.45 4.46 0.00 0.00 1.27 7.83 3.19 28.96 1.20 0.00 2.66 7.82 0.00 2.85 3.77 3.44 3.44 0.00 74 E15_Aa NovelBoundary 0 0.00 3.16 4.11 11.72 7.22 8.01 16.56 4.19 10.19 20.15 2.37 6.15 13.64 2.47 17.55 0.00 4.77 12.89 13.55 2.94 0.00 2.82 3.41 75 ER15a ExonRegion 0 34.63 52.46 29.90 48.59 74.87 98.79 57.34 48.13 82.42 71.14 13.45 53.79 50.74 26.29 21.47 27.81 23.39 29.62 25.14 24.83 24.20 53.62 38.15 76 IG29 Intergenic 0 24.37 40.93 27.18 45.98 51.62 41.60 24.14 46.29 51.63 55.14 2.91 25.17 22.21 5.77 11.40 4.62 3.63 3.44 6.78 8.96 1.58 35.41 8.15 77 IG29_SR1 SilentIntergenicRegion 0 12.93 19.43 7.49 5.60 14.57 28.32 13.98 8.45 17.84 20.26 6.66 0.00 0.00 7.04 2.90 6.60 5.87 0.00 7.43 4.02 0.73 21.07 2.28 78 IG29_AR1 ActiveIntergenicRegion 0 30.10 39.99 18.93 13.93 34.19 53.18 21.77 15.36 34.58 39.63 12.89 0.00 3.65 11.19 13.54 13.54 9.90 1.64 9.56 5.44 2.20 29.40 12.07 79 IG29_SR2 SilentIntergenicRegion 0 60.70 58.13 64.30 66.31 58.98 76.84 36.92 36.85 78.33 78.71 10.47 9.32 20.91 12.95 16.48 16.35 7.24 9.88 21.94 11.26 8.17 53.36 26.23 80 IG29_AR2 ActiveIntergenicRegion 0 43.78 80.29 50.46 81.10 101.13 78.57 44.09 95.28 100.41 106.44 4.21 50.49 37.42 10.98 22.20 7.71 4.11 5.10 10.11 15.41 1.86 70.47 13.80