Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AK3L1 Gene 0 22.71 28.89 34.43 21.87 21.18 51.35 37.80 30.16 44.28 39.42 29.89 40.60 2.58 2.15 1.83 1.65 5.95 19.15 15.30 21.72 39.19 29.76 23.88 2 497030 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 294419 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 470888 Transcript 0 0.00 0.00 0.81 0.00 0.00 1.50 0.00 0.00 0.00 0.33 2.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.78 5 395334 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 327299 Transcript 0 13.51 16.51 17.88 11.01 8.33 29.80 21.18 15.76 26.15 17.90 12.66 20.27 1.08 0.61 0.50 0.33 2.82 9.49 6.91 10.57 21.92 16.34 12.68 7 474968 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.34 0.97 0.00 2.84 1.57 4.94 0.00 0.00 1.19 0.00 0.00 0.00 2.04 0.00 0.00 0.40 0.40 0.54 8 479060 Transcript 0 0.00 0.59 1.06 0.59 0.00 0.00 0.38 0.00 1.04 0.50 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1a ExonRegion 0 3.00 3.55 0.05 0.00 0.00 12.38 1.70 0.00 0.44 1.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 2.80 0.27 5.39 0.91 2.46 10 E1a_E3b KnownJunction 0 12.82 0.00 0.00 0.00 0.00 14.59 5.87 0.00 3.21 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 0.00 2.94 11.61 0.00 0.00 11 E1a_E6a NovelJunction 0 0.00 0.00 4.91 0.00 0.00 4.94 1.94 0.00 4.54 5.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.42 0.00 11.61 3.06 4.35 12 ER2a ExonRegion 0 0.00 0.00 0.81 0.00 0.00 1.50 0.00 0.00 0.00 0.33 2.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.78 13 E2_Ab KnownBoundary 0 0.00 0.00 1.63 0.00 0.00 5.68 0.00 0.00 0.00 1.21 5.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 14 ER2b ExonRegion 0 0.00 0.00 0.64 0.00 0.00 0.82 0.02 0.56 0.00 0.97 2.94 0.00 0.00 0.00 0.00 0.00 0.00 3.29 0.72 0.00 0.50 0.00 1.02 15 E2a_E3b KnownJunction 0 0.00 0.00 3.10 2.00 0.00 2.84 0.00 0.00 0.00 1.64 2.68 0.00 0.00 0.00 0.00 0.00 0.00 6.38 0.00 0.00 0.00 0.00 0.00 16 ER3a ExonRegion 0 0.08 2.43 0.94 1.31 0.39 3.96 6.58 3.02 2.23 2.46 4.96 6.15 0.00 0.00 0.27 0.00 2.13 2.84 1.89 1.93 5.89 4.50 2.01 17 E3_Ab KnownBoundary 0 0.00 2.83 4.05 4.46 6.96 0.00 31.71 8.42 6.19 10.88 2.21 12.30 0.00 0.00 0.00 0.00 7.67 7.34 3.67 3.00 9.20 6.12 3.16 18 ER3b ExonRegion 0 6.44 4.95 18.78 8.21 6.99 12.58 8.64 19.75 11.56 23.01 17.23 7.44 3.18 4.10 5.66 2.54 7.17 21.57 9.18 12.63 30.84 8.05 13.35 19 E3a_E6a KnownJunction 0 21.19 26.57 40.48 32.46 15.53 37.71 23.45 25.06 40.68 59.12 42.22 37.06 6.82 12.01 11.74 7.86 8.32 45.39 30.40 30.74 75.92 31.17 32.27 20 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.67 1.94 0.00 3.33 3.14 5.19 0.00 0.00 0.09 0.00 0.00 0.00 1.52 0.00 0.00 0.81 0.79 1.08 21 E4a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.34 0.00 4.69 0.00 0.00 2.30 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 22 ER5a ExonRegion 0 0.00 1.18 2.12 1.18 0.00 0.00 0.77 0.00 2.08 0.99 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER6a ExonRegion 0 8.48 11.91 21.16 13.92 6.67 33.91 20.09 26.62 32.32 34.89 53.53 20.13 0.94 4.90 3.80 1.78 10.98 29.59 13.83 17.15 61.65 17.73 26.45 25 E6a_E7a KnownJunction 0 7.11 6.25 51.80 29.50 19.95 32.14 17.71 26.25 46.27 75.16 70.97 62.27 0.00 4.77 6.06 4.10 26.83 48.04 29.55 24.03 93.04 6.18 46.69 26 ER7a ExonRegion 0 11.55 18.41 33.59 18.89 13.26 34.92 25.06 27.94 39.00 46.96 50.33 29.33 0.11 4.65 3.71 3.50 18.83 30.12 16.11 24.56 72.23 20.71 18.13 27 E7a_E8a KnownJunction 0 17.04 50.85 46.33 38.09 10.87 35.43 46.77 48.06 53.30 83.62 55.49 46.82 0.00 2.35 10.63 11.88 24.59 45.93 29.08 41.61 66.60 8.02 27.40 28 ER8a ExonRegion 0 25.67 38.07 41.04 23.23 22.28 46.51 40.57 37.30 34.53 58.09 44.05 36.75 3.93 5.57 2.40 1.38 4.30 35.26 29.67 36.59 90.97 32.92 38.55 29 E8_Da KnownBoundary 0 29.86 62.62 51.30 50.14 31.75 95.23 71.46 55.78 65.91 97.91 123.29 79.98 0.00 7.77 4.45 4.10 12.34 54.14 26.64 63.47 136.34 52.17 39.01 30 ER8b ExonRegion 0 29.89 40.24 50.28 38.95 28.30 60.29 59.42 40.38 55.17 77.64 89.15 65.73 9.81 3.10 9.14 5.85 16.00 52.86 18.63 53.96 104.38 50.76 37.55 31 E8b_E9a KnownJunction 0 55.71 53.41 50.09 39.06 47.28 57.07 67.22 33.60 65.10 96.09 68.75 71.12 13.64 4.94 21.51 6.84 20.20 56.79 21.93 41.35 72.59 46.78 51.73 32 ER9a ExonRegion 0 38.03 51.31 39.70 31.80 30.86 54.59 51.59 33.65 52.20 82.96 47.61 54.41 12.82 4.87 10.15 12.88 13.09 42.01 19.64 31.42 94.61 27.50 36.90 33 ER9b ExonRegion 0 25.91 58.78 79.78 55.72 57.95 83.63 76.60 61.46 68.83 116.14 104.09 102.30 6.65 6.11 6.33 8.85 21.22 60.19 58.88 59.63 87.93 67.53 55.35 34 E9_Db KnownBoundary 0 7.11 56.24 52.69 22.64 67.40 71.49 69.87 27.40 49.71 56.68 44.59 75.62 0.00 0.00 10.26 0.00 11.03 31.88 17.32 17.77 76.42 36.56 26.04 35 E9_Dc KnownBoundary 0 28.67 42.10 37.96 25.70 58.49 40.37 58.12 37.83 26.07 47.47 66.44 37.06 0.00 7.48 0.00 0.00 17.39 11.57 28.80 25.82 72.77 14.76 15.11 36 ER9c ExonRegion 0 25.82 73.62 71.07 37.75 90.17 76.84 97.18 51.34 63.86 98.06 97.61 109.54 4.69 4.87 5.80 4.46 21.46 41.76 36.63 35.53 116.58 42.09 37.59 37 ER9d ExonRegion 0 24.17 37.69 44.38 34.05 50.23 68.07 67.83 49.06 49.61 65.36 58.86 85.59 4.63 4.71 4.28 3.78 12.00 23.57 25.60 34.48 38.95 51.00 32.14 38 E9_Dd KnownBoundary 1 25.34 23.55 23.51 31.30 40.58 57.41 92.26 40.75 70.69 48.08 25.53 104.43 0.00 2.47 0.00 3.59 3.55 13.27 24.85 28.83 16.80 23.76 23.73 39 ER9e ExonRegion 0 26.95 30.59 34.82 20.71 16.28 55.65 35.77 28.50 50.08 33.34 20.37 34.40 2.16 1.22 0.74 0.66 3.51 16.14 11.93 19.20 37.95 28.19 23.34