Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CACHD1 Gene 0 18.42 48.51 44.92 20.92 33.74 82.49 58.38 25.11 14.58 44.05 0.00 0.58 0.27 0.06 0.03 0.00 0.05 239.44 14.39 45.36 67.96 412.08 228.05 2 371073 Transcript 0 1.63 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 1.35 0.00 0.00 8.91 25.96 4.34 3 290039 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 495994 Transcript 0 0.50 2.36 4.32 4.69 8.70 15.28 25.68 8.68 5.33 14.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.62 7.46 18.34 0.92 11.01 8.68 5 470527 Transcript 0 0.00 0.37 0.22 0.12 0.16 0.00 1.35 0.16 0.56 0.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.02 1.30 0.01 1.23 1.97 6 486580 Transcript 0 1.44 4.31 7.58 2.08 4.25 3.08 7.04 8.64 1.46 4.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.33 0.58 3.28 2.96 5.92 15.43 7 ER1a ExonRegion 0 1.63 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 1.35 0.00 0.00 8.91 25.96 4.34 8 E1_Ab KnownBoundary 0 3.11 6.58 2.87 2.00 0.00 0.00 2.12 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33.00 0.00 3.00 11.18 63.13 22.79 9 ER1b ExonRegion 0 0.20 7.36 1.41 0.32 0.12 0.00 1.82 1.58 0.73 0.73 0.00 0.00 0.00 0.45 0.00 0.00 0.00 104.48 0.00 14.67 33.10 93.70 78.27 10 E1a_E3a KnownJunction 0 3.26 8.16 4.49 2.06 0.00 0.00 3.71 1.89 1.27 5.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 118.06 0.00 11.12 57.64 193.93 146.82 11 I1_AR1 ActiveIntronRegion 0 9.63 17.49 4.12 0.58 7.33 0.23 7.24 0.63 0.23 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.47 0.00 2.95 1.39 0.07 6.28 12 ER2a ExonRegion 0 1.51 3.73 5.44 4.55 7.35 29.71 30.19 11.51 6.13 14.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.15 5.64 22.73 2.75 0.75 3.66 13 E2a_E3a KnownJunction 0 0.00 3.35 6.30 9.52 15.20 10.33 46.86 7.56 8.48 27.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32.33 16.75 29.79 0.00 0.00 0.00 14 ER3a ExonRegion 0 2.86 18.66 14.43 9.89 15.59 30.24 37.66 9.90 13.23 28.33 0.00 0.00 0.00 0.93 0.00 0.00 0.00 147.38 3.59 47.72 65.03 236.33 180.39 15 E3a_E5a KnownJunction 0 3.56 30.98 15.82 8.29 11.38 39.07 39.88 10.80 18.92 28.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 156.40 3.58 54.33 54.49 304.39 182.68 16 ER4a ExonRegion 0 0.00 1.85 1.11 0.62 0.81 0.00 4.43 0.78 0.00 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 1.30 0.07 0.81 4.51 17 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER5a ExonRegion 0 3.51 11.49 17.55 10.24 10.70 52.18 38.33 18.00 17.91 33.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 216.86 21.57 45.67 71.61 350.88 213.35 19 E5a_E6a KnownJunction 0 10.74 5.72 12.27 7.86 35.74 59.11 32.77 19.59 18.55 32.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 166.73 9.22 48.39 49.24 473.58 281.10 20 ER6a ExonRegion 0 7.87 21.80 20.52 16.06 19.23 47.82 58.61 27.07 19.97 41.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 271.31 16.73 51.52 78.20 507.91 291.72 21 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.07 0.00 2.94 3.93 22 E6a_E8a KnownJunction 0 3.48 34.34 28.80 16.18 8.40 51.90 47.65 47.65 7.75 35.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 341.53 25.51 62.83 94.77 558.88 383.28 23 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.47 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.10 2.13 0.00 2.42 1.42 25 ER8a ExonRegion 0 5.85 36.04 19.88 12.41 25.37 76.88 55.26 26.59 10.74 35.68 0.00 1.43 0.00 0.00 0.00 0.00 0.00 323.52 24.20 58.35 102.01 502.19 294.01 26 E8a_E9a KnownJunction 0 6.67 12.89 24.51 15.68 12.31 77.97 48.62 20.66 3.24 24.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 350.78 0.00 53.05 117.62 382.53 282.64 27 E8a_E10a KnownJunction 0 0.00 0.00 1.21 0.00 3.57 5.79 0.00 6.98 1.39 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.38 0.00 2.49 0.00 32.27 22.37 28 ER9a ExonRegion 0 3.33 28.58 21.78 10.27 14.41 57.83 44.09 17.69 9.23 30.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 358.67 22.58 43.77 106.08 333.32 246.92 29 E9a_E10a KnownJunction 0 3.78 38.41 24.19 3.36 26.23 78.88 49.11 9.32 5.84 29.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 332.04 30.02 43.91 118.61 375.61 265.14 30 ER10a ExonRegion 0 8.84 32.57 24.34 12.03 21.16 81.95 49.09 21.74 9.39 54.00 0.00 0.00 1.82 0.00 0.00 0.00 0.00 340.82 23.12 43.41 100.42 440.36 270.01 31 E10a_E11a KnownJunction 0 10.67 33.94 14.31 11.15 25.55 111.98 70.22 15.44 13.86 59.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 225.96 29.18 53.88 75.80 498.20 227.32 32 ER11a ExonRegion 0 13.55 48.17 20.32 14.56 34.68 87.14 61.09 20.25 10.53 52.64 0.00 0.00 3.94 0.00 0.00 0.00 0.00 253.26 14.89 55.21 96.88 539.84 278.12 33 E11a_E12a KnownJunction 0 13.93 40.78 15.49 9.16 30.22 66.44 53.53 23.12 3.99 51.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 297.51 3.95 62.70 101.56 528.75 236.46 34 E11a_E13a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 5.34 0.00 0.00 1.33 5.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.43 2.84 21.13 8.62 35 ER12a ExonRegion 0 5.71 32.72 15.75 9.60 26.52 76.42 52.47 15.26 10.52 37.19 0.00 0.00 0.00 0.00 0.00 0.00 0.72 325.31 9.64 57.26 99.16 438.55 263.49 36 E12a_E13a KnownJunction 0 6.45 35.32 27.05 5.49 14.86 60.19 52.24 18.81 26.04 49.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 309.78 24.00 63.47 61.72 768.05 353.23 37 ER13a ExonRegion 0 16.55 32.66 30.76 10.10 24.65 56.33 56.12 31.95 23.10 67.72 0.00 0.00 2.63 0.00 0.00 0.00 1.12 255.21 11.17 67.19 63.08 609.65 273.71 38 E13a_E14a KnownJunction 0 23.93 44.53 40.00 12.82 24.87 100.06 79.05 43.70 32.23 85.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 297.05 4.71 54.27 42.19 529.79 261.21 39 E14_Aa NovelBoundary 0 35.64 16.12 13.48 11.99 0.00 0.00 9.36 8.87 3.12 4.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.55 0.00 2.68 0.00 27.98 14.08 40 ER14a ExonRegion 0 30.23 68.86 36.52 22.66 44.67 95.53 78.47 40.31 20.01 75.09 0.00 1.78 0.00 0.00 0.00 0.00 0.00 280.13 19.37 72.41 90.41 790.86 393.27 41 E14a_E15a KnownJunction 0 14.30 74.79 37.88 30.97 39.47 127.14 96.50 41.40 12.47 65.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 294.69 22.40 84.31 123.62 720.66 360.49 42 ER15a ExonRegion 0 3.19 48.13 32.41 32.63 34.76 76.51 64.54 37.31 21.51 66.02 0.00 0.37 0.00 0.50 0.00 0.00 0.00 426.78 16.71 73.44 121.63 680.22 406.15 43 E15a_E16a KnownJunction 0 16.67 52.75 42.87 25.84 18.93 102.44 64.79 51.06 18.06 74.62 0.00 6.15 0.00 0.00 0.00 0.00 0.00 507.10 15.25 111.79 176.25 1061.36 513.72 44 ER16a ExonRegion 0 12.97 55.09 37.11 26.10 29.01 84.98 58.29 39.17 17.28 63.71 0.00 1.05 0.00 0.35 0.00 0.00 0.00 493.99 17.91 85.53 138.38 708.53 450.82 45 E16a_E17a KnownJunction 0 28.52 68.61 38.41 29.47 25.47 139.52 62.45 42.76 17.91 60.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 608.62 19.58 72.42 176.37 924.81 567.07 46 E17_Aa NovelBoundary 0 20.74 13.75 25.46 7.72 3.65 0.00 15.28 13.97 9.14 17.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76.61 3.76 11.06 13.16 11.08 30.73 47 ER17a ExonRegion 0 10.95 41.71 41.71 24.07 21.54 60.26 44.38 28.05 15.86 55.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 435.49 26.11 61.60 109.41 529.11 337.49 48 E17a_E18b KnownJunction 0 12.97 40.26 19.69 22.74 54.75 70.02 52.47 12.28 8.88 29.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 315.05 8.56 25.69 104.22 346.64 233.47 49 ER18a ExonRegion 0 1.44 4.31 7.58 2.08 4.25 3.08 7.04 8.64 1.46 4.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.33 0.58 3.28 2.96 5.92 15.43 50 E18_Ab KnownBoundary 0 0.00 0.00 10.41 3.33 7.72 0.00 13.73 2.42 1.79 2.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.20 0.00 9.20 0.00 0.00 21.17 51 ER18b ExonRegion 0 16.94 70.30 44.99 23.51 32.33 101.32 58.16 26.52 14.89 53.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 394.26 25.89 63.76 110.36 534.65 306.94 52 E18_Da NovelBoundary 0 20.23 16.51 28.18 1.86 14.77 2.44 13.34 15.40 4.66 14.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65.83 0.00 20.20 2.78 33.92 22.28 53 E18a_E19a KnownJunction 0 9.56 54.99 42.84 21.74 25.47 81.26 63.02 11.34 14.06 59.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 335.77 22.59 57.46 108.60 597.21 294.33 54 I18 Intron 0 4.02 8.65 12.32 4.52 8.58 4.20 16.21 5.23 3.13 6.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.53 1.46 5.85 1.30 19.92 7.31 55 I18_SR1 SilentIntronRegion 0 4.33 9.25 13.51 4.94 9.65 4.18 17.51 5.37 3.52 6.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.26 1.48 6.38 0.89 21.05 7.74 56 E19_Aa NovelBoundary 0 10.67 42.03 29.30 11.92 27.33 16.58 22.13 12.98 7.78 14.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.56 0.00 0.00 11.55 32.27 4.01 57 ER19a ExonRegion 0 10.71 38.49 39.81 30.47 35.74 90.60 67.30 19.94 19.56 60.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 365.72 22.49 66.16 118.61 584.03 408.26 58 E19_Da NovelBoundary 0 20.45 48.08 52.75 30.73 7.98 110.79 73.93 29.82 30.15 70.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 392.02 33.51 80.73 114.97 746.38 465.49 59 E19_Db NovelBoundary 0 16.82 16.25 42.16 18.01 0.00 0.00 26.76 9.16 10.30 8.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.52 0.00 0.00 5.93 20.45 16.13 60 E19b_E20a KnownJunction 0 21.78 45.58 41.39 19.18 39.13 76.66 62.31 18.89 29.22 67.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 425.52 25.98 111.34 81.79 598.43 391.65 61 ER19b ExonRegion 0 16.46 32.54 41.71 22.31 19.62 76.00 50.36 25.09 26.26 67.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 373.66 29.61 95.98 91.41 661.09 427.44 62 I19_SR1 SilentIntronRegion 0 4.48 12.66 16.38 8.39 10.60 6.15 17.16 6.33 3.48 9.08 0.00 0.00 0.00 0.00 0.04 0.00 0.00 29.53 2.00 8.80 4.04 27.58 17.40 63 ER20a ExonRegion 0 10.53 53.55 43.47 22.80 32.00 81.94 49.15 22.69 25.20 69.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 303.30 14.40 65.75 102.25 470.74 302.93 64 E20a_E21a KnownJunction 0 24.00 84.85 45.59 20.54 51.61 225.21 65.63 24.27 28.36 77.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 456.86 21.65 72.35 150.80 528.32 423.57 65 ER21a ExonRegion 0 14.05 63.39 41.06 29.11 32.99 108.23 65.67 26.48 18.23 66.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 489.69 19.97 63.66 113.51 546.51 454.53 66 E21a_E22a KnownJunction 0 12.97 84.06 29.89 26.74 31.92 137.99 65.76 27.48 13.37 62.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 548.43 16.57 66.28 127.57 682.94 461.39 67 E22_Aa NovelBoundary 0 3.41 14.60 17.95 2.06 4.33 33.96 51.67 11.58 1.71 11.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 109.81 19.20 0.00 32.12 157.37 137.95 68 ER22a ExonRegion 0 9.32 47.61 42.52 22.35 41.51 110.92 60.89 25.72 13.77 51.31 0.00 3.11 0.00 0.00 0.00 0.00 0.00 411.78 15.11 39.72 132.96 484.09 361.91 69 E22a_E23a KnownJunction 0 12.37 28.42 33.71 24.27 46.77 81.94 41.51 29.82 18.08 52.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 353.06 27.01 53.31 123.06 437.57 329.50 70 ER23a ExonRegion 0 17.16 51.95 39.90 20.64 28.17 86.84 51.10 25.89 13.73 44.02 0.00 2.26 0.00 0.00 0.00 0.00 0.00 307.89 17.57 62.81 105.08 358.38 261.76 71 E23a_E24a KnownJunction 0 19.93 48.15 34.92 22.54 27.16 96.36 44.83 17.46 14.67 43.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 322.59 22.40 73.76 123.62 375.18 296.98 72 ER24a ExonRegion 0 12.87 53.71 41.32 18.85 25.28 86.36 63.72 29.07 15.15 48.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 289.59 20.65 62.63 101.32 383.49 280.60 73 E24a_E25a KnownJunction 0 13.34 42.30 34.62 3.20 44.65 60.82 64.65 15.81 11.69 44.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 213.28 21.27 60.08 99.03 330.48 315.84 74 ER25a ExonRegion 0 13.68 41.11 38.07 12.63 26.73 63.62 38.75 22.04 14.12 36.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 278.65 11.73 50.86 94.36 327.36 250.39 75 E25a_E26a KnownJunction 0 24.52 70.58 39.27 28.04 23.60 89.55 54.14 19.55 14.64 42.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 277.74 9.41 52.48 103.42 458.39 273.84 76 I25_AR1 ActiveIntronRegion 0 3.68 8.42 3.38 2.61 8.27 12.97 16.36 1.68 2.57 4.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.03 0.69 6.80 6.71 48.17 24.45 77 ER26a ExonRegion 0 18.58 51.60 54.09 28.39 36.25 89.69 61.33 27.12 18.20 46.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 391.80 10.75 44.96 96.51 486.56 297.72 78 E26a_E27a KnownJunction 0 50.31 39.14 73.42 39.56 50.08 78.19 96.27 28.71 27.23 49.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 436.34 32.85 45.64 90.94 635.36 376.71 79 ER27a ExonRegion 0 20.05 37.72 54.90 24.83 22.71 79.78 52.56 23.02 21.79 40.40 0.00 0.00 0.00 0.42 0.00 0.00 0.00 204.63 12.66 42.24 76.07 428.93 266.87 80 E27a_E28a KnownJunction 0 13.34 61.70 42.61 19.84 51.02 119.70 83.73 19.92 21.44 44.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 370.34 28.14 57.01 126.15 368.99 256.26 81 ER28a ExonRegion 0 14.16 42.94 48.68 10.83 29.64 117.81 43.33 26.50 18.21 41.10 0.00 0.00 2.53 0.00 0.00 0.00 0.00 392.65 15.19 50.16 91.48 444.24 370.69 82 E28a_E29a KnownJunction 0 17.56 35.65 63.42 17.88 22.75 112.44 56.48 35.04 22.40 50.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 713.54 22.40 49.22 90.50 989.53 691.27 83 ER29a ExonRegion 0 9.05 35.11 61.10 30.50 28.20 95.34 49.87 34.91 19.82 65.56 0.00 1.78 0.00 0.00 0.00 0.00 0.00 383.26 33.48 68.44 127.40 643.77 476.66 84 E29a_E30a KnownJunction 0 10.45 25.19 55.26 36.83 47.45 65.76 57.10 43.00 19.18 74.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 448.65 47.91 75.55 132.39 386.51 383.02 85 E30_Aa NovelBoundary 0 9.85 3.35 6.48 10.06 7.72 32.20 17.14 22.43 7.81 9.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65.45 0.00 8.82 8.28 70.36 49.34 86 ER30a ExonRegion 0 43.99 92.90 94.77 38.04 67.60 138.10 97.63 37.16 19.95 57.70 0.00 1.26 0.10 0.00 0.12 0.00 0.00 205.61 15.87 44.73 49.51 538.60 218.51 87 ER30b ExonRegion 0 1.27 0.00 0.74 1.36 1.61 0.00 1.85 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.44 5.42 2.94