Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AK5 Gene 0 5.58 10.60 19.14 5.19 7.39 23.79 7.90 15.23 34.61 27.34 0.05 0.65 0.95 0.14 0.28 0.28 0.47 5.12 2.45 2.90 28.93 5.67 9.97 2 370807 Transcript 0 0.40 0.00 0.00 0.00 0.00 5.06 2.44 0.00 0.15 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 8.02 0.00 1.45 3 354567 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 370806 Transcript 0 1.06 0.00 2.76 0.00 0.00 0.00 0.00 0.43 0.31 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 317704 Transcript 0 6.45 0.00 6.12 5.76 0.00 0.00 4.37 11.17 11.78 10.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 3.12 6.66 6 344720 Transcript 0 0.08 0.16 0.14 0.00 0.00 0.36 0.10 0.46 1.04 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.35 0.00 0.00 0.53 0.12 0.39 7 478407 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 469394 Transcript 0 1.67 0.06 1.37 0.02 0.53 0.76 0.31 0.56 0.23 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.63 0.06 0.58 0.04 0.03 9 466114 Transcript 0 4.21 0.00 0.00 0.00 0.00 0.00 0.85 0.89 1.77 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 465146 Transcript 0 0.00 0.00 1.89 0.77 0.00 0.00 1.51 0.95 0.41 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 11 478255 Transcript 0 0.23 0.22 0.20 0.00 0.00 0.60 1.01 0.00 0.21 0.19 0.21 0.00 0.00 0.44 0.76 0.32 0.72 0.00 0.00 0.69 2.40 1.60 4.18 12 466393 Transcript 0 0.56 0.00 0.24 0.30 0.35 0.00 0.17 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.29 0.00 0.39 13 IG24_AR2 ActiveIntergenicRegion 0 20.53 19.32 10.54 8.72 10.70 16.87 5.83 2.59 1.36 2.98 0.00 9.52 0.00 0.97 1.16 0.00 0.00 1.85 3.19 2.13 0.00 0.00 0.00 14 ER1a ExonRegion 0 0.40 0.00 0.00 0.00 0.00 5.06 2.44 0.00 0.15 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.42 0.00 0.00 8.02 0.00 1.45 15 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 18.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.40 0.00 3.59 16 E1_Ac KnownBoundary 0 6.37 0.00 0.00 0.00 0.00 12.49 1.99 6.20 2.89 4.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.19 0.00 0.00 17.48 0.00 4.27 17 ER1b ExonRegion 0 4.23 0.00 0.00 0.00 0.00 15.98 2.65 0.00 2.47 3.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 24.87 0.00 5.87 18 ER1c ExonRegion 0 1.18 6.15 9.86 1.23 2.27 14.30 3.09 4.10 18.12 19.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.59 0.27 2.82 32.86 3.13 6.06 19 E1a_E3a KnownJunction 0 0.00 19.01 37.99 7.72 11.38 54.85 22.26 12.90 66.93 53.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.78 4.80 6.39 73.45 17.82 20.32 20 ER2a ExonRegion 0 0.00 0.00 0.25 0.00 0.00 0.00 0.14 0.78 1.10 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.83 0.00 0.00 1.34 0.00 0.00 21 E2_Ab KnownBoundary 0 0.00 0.00 1.51 0.00 0.00 0.00 0.00 1.77 1.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 3.15 0.00 0.00 22 ER2b ExonRegion 0 0.00 1.00 0.88 0.00 0.00 0.00 0.00 0.20 2.51 0.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.06 0.00 0.00 1.40 0.52 0.00 23 E2_Da KnownBoundary 0 0.00 0.00 1.51 0.00 0.00 0.00 0.00 0.00 1.77 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 24 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER2c ExonRegion 0 0.25 0.48 0.16 0.00 0.00 1.09 0.16 0.61 2.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.00 0.00 0.26 0.37 1.17 26 E2b_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER3a ExonRegion 0 0.00 14.24 35.94 8.18 8.03 42.79 15.89 12.10 58.46 50.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.02 3.19 4.26 69.78 12.50 18.60 28 ER3b ExonRegion 0 11.76 10.71 40.43 9.73 9.28 37.43 9.27 22.62 70.47 49.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.58 1.75 4.63 72.96 18.17 21.50 29 E3a_E4b KnownJunction 0 12.45 26.38 37.70 4.13 0.00 31.18 25.44 22.18 76.21 53.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.33 4.80 22.43 68.57 18.00 11.52 30 E3a_E4c KnownJunction 0 6.45 0.00 6.12 5.76 0.00 0.00 4.37 11.17 11.78 10.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 3.12 6.66 31 ER4a ExonRegion 0 1.67 0.06 1.37 0.02 0.53 0.76 0.31 0.56 0.23 0.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.63 0.06 0.58 0.04 0.03 32 E4_Ab KnownBoundary 0 0.00 0.00 4.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 33 ER4b ExonRegion 0 5.35 11.81 36.83 6.15 6.47 18.97 12.67 14.91 54.86 44.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.78 2.88 8.63 40.52 17.36 13.95 34 E4_Ac KnownBoundary 0 7.41 30.19 34.48 9.16 18.68 68.82 28.79 20.66 56.16 47.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.15 3.67 0.00 77.47 23.02 31.50 35 ER4c ExonRegion 0 8.96 33.01 35.54 6.99 16.08 46.89 21.18 41.61 74.50 60.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.86 1.78 14.00 73.53 25.00 28.04 36 E4a_E5a KnownJunction 0 18.52 39.66 30.60 10.02 20.63 71.83 15.28 42.92 70.89 66.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.73 0.00 15.02 44.91 15.12 18.87 37 E5_Aa NovelBoundary 0 10.74 0.00 0.00 0.00 0.00 0.00 0.00 4.93 0.00 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER5a ExonRegion 0 18.04 27.85 42.72 12.78 26.35 78.96 24.98 44.56 84.20 72.06 0.00 0.00 1.49 0.00 0.00 0.00 0.00 9.04 3.23 9.48 34.81 21.61 33.48 39 E5_Da KnownBoundary 0 20.08 34.14 46.51 13.19 31.15 119.59 43.10 44.52 95.63 84.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.31 4.80 6.33 42.50 25.72 40.04 40 ER5b ExonRegion 0 13.92 29.65 52.21 13.05 24.29 91.01 33.66 37.71 97.93 77.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.18 3.19 7.33 43.32 20.12 43.97 41 E5b_E6a KnownJunction 0 20.82 37.10 56.36 17.55 32.00 70.98 29.50 36.02 106.57 72.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.15 4.24 11.38 40.96 8.63 34.66 42 ER6a ExonRegion 0 11.96 40.49 59.56 13.45 22.92 69.37 40.01 36.07 111.86 71.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.72 3.19 10.45 60.36 16.94 36.01 43 ER6b ExonRegion 0 12.72 36.05 56.78 10.03 26.38 73.63 35.86 43.84 120.31 88.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.98 7.63 9.89 92.94 20.63 31.59 44 E6_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 3.84 2.55 1.79 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 E6b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 E6b_E8a KnownJunction 0 30.15 46.70 54.40 3.33 33.19 81.26 19.08 32.08 91.58 68.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.22 0.00 6.39 111.20 18.74 29.36 47 ER6c ExonRegion 0 4.21 0.00 0.00 0.00 0.00 0.00 0.85 0.89 1.77 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 ER7a ExonRegion 0 1.54 0.25 1.10 0.00 0.54 0.58 0.53 0.31 0.85 0.76 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.13 0.17 0.27 0.00 0.00 49 E8_Ab NovelBoundary 0 22.82 25.85 58.19 7.19 26.15 45.43 7.91 29.04 63.60 55.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.46 0.00 3.20 78.95 4.78 37.05 50 ER8a ExonRegion 0 20.29 33.38 56.20 5.87 21.87 52.48 14.06 31.71 73.94 64.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.75 0.00 6.16 97.42 8.91 30.68 51 ER8b ExonRegion 0 20.33 40.77 63.35 11.58 30.02 77.84 32.84 39.18 90.60 77.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.74 8.46 7.14 125.99 12.76 30.50 52 E8a_E9a KnownJunction 0 18.45 46.11 74.75 15.62 31.07 64.00 31.62 43.91 77.83 76.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.27 8.28 14.83 158.64 16.35 38.75 53 ER9a ExonRegion 0 19.77 30.35 74.05 16.23 19.32 71.52 30.36 46.42 93.94 85.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.23 4.20 5.24 123.80 21.41 47.02 54 E9a_E10a KnownJunction 0 36.38 40.19 53.61 17.25 34.80 53.44 15.15 50.07 98.55 98.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.89 12.80 3.07 116.14 24.00 34.83 55 ER10a ExonRegion 0 23.25 32.51 67.83 13.58 19.36 57.44 20.31 45.01 89.76 81.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.91 16.13 10.80 94.79 16.15 24.52 56 E10_Da KnownBoundary 0 0.00 0.00 7.07 0.00 0.00 0.00 0.00 5.09 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57 E10a_E11a KnownJunction 0 20.82 31.24 69.07 14.48 8.49 63.88 37.71 35.53 79.17 65.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.81 13.65 7.93 82.91 21.13 30.82 58 ER10b ExonRegion 0 0.00 0.00 1.89 0.77 0.00 0.00 1.51 0.95 0.41 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 0.00 0.00 59 ER11a ExonRegion 0 17.62 39.91 67.57 16.10 18.98 64.48 33.84 37.62 90.57 89.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.33 10.37 4.90 111.83 23.16 52.86 60 E11a_E12a KnownJunction 0 25.34 72.68 52.90 11.22 34.04 98.30 39.30 32.74 80.96 82.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.07 3.95 6.14 137.58 21.25 67.10 61 ER12a ExonRegion 0 17.31 49.66 54.79 11.99 30.44 81.22 43.63 39.02 106.69 89.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.49 6.16 2.55 118.51 25.74 49.01 62 E12_Da NovelBoundary 0 13.93 0.00 0.00 0.00 3.82 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 E12a_E13a KnownJunction 0 16.82 51.57 47.31 12.19 22.41 86.03 39.17 37.01 106.31 74.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.00 0.00 2.94 107.43 25.78 57.96 64 ER13a ExonRegion 0 12.47 22.44 65.82 16.46 19.45 72.00 21.55 48.37 95.58 78.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.21 7.40 6.42 127.41 16.06 40.77 65 E13a_E14a KnownJunction 0 7.26 39.99 74.42 16.65 6.96 56.84 29.94 35.16 94.07 89.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.87 4.33 0.00 112.43 23.33 37.47 66 ER14a ExonRegion 0 16.30 31.18 69.98 12.86 9.88 53.56 21.01 33.21 88.22 75.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.64 5.23 3.67 128.04 15.07 29.52 67 E14a_E16a KnownJunction 0 12.59 69.20 80.87 10.19 19.52 95.57 32.99 40.09 91.87 80.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.63 9.13 8.25 147.09 26.94 22.45 68 E15_Aa NovelBoundary 0 3.63 5.53 33.50 10.42 6.96 7.10 7.24 31.46 19.85 34.73 2.21 0.00 0.00 0.00 0.00 6.32 7.85 34.24 0.00 8.56 3.03 2.27 0.00 69 ER15a ExonRegion 0 0.46 0.44 0.41 0.00 0.00 1.20 2.02 0.00 0.42 0.37 0.42 0.00 0.00 0.87 1.53 0.65 1.44 0.00 0.00 1.38 4.80 0.56 4.27 70 E15a_E16a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 4.10 71 I15_AR1 ActiveIntronRegion 0 0.00 0.00 0.00 0.99 0.00 0.00 0.00 0.00 7.41 0.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.82 0.00 0.00 72 ER16a ExonRegion 0 9.94 23.21 58.94 9.04 14.73 61.59 14.67 38.63 77.92 59.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.33 3.78 6.01 86.78 18.07 28.23 73 E16a_E18a KnownJunction 0 13.78 12.50 67.15 20.81 19.35 69.90 29.54 60.63 100.98 66.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.43 12.42 12.14 54.80 45.93 39.18 74 ER17a ExonRegion 0 1.11 0.00 0.48 0.59 0.70 0.00 0.35 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.72 0.00 0.00 0.58 0.00 0.77 75 E17a_E18a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76 ER18a ExonRegion 0 7.33 13.73 36.56 20.75 12.35 58.78 9.39 45.03 97.78 52.56 0.00 1.40 5.30 0.52 0.80 2.19 0.00 6.03 6.08 6.61 44.77 16.20 17.91 77 E18_Da KnownBoundary 0 10.37 29.47 61.62 33.03 8.66 91.82 14.40 65.76 134.17 107.88 0.00 0.00 13.15 0.00 0.00 0.00 0.00 4.60 4.33 12.40 51.65 37.60 44.99 78 ER18b ExonRegion 0 7.38 16.96 21.79 10.06 12.65 35.67 9.37 25.64 55.83 42.78 0.16 3.13 4.29 0.50 1.11 1.12 2.19 4.70 5.21 4.46 19.72 4.05 7.52 79 ER18c ExonRegion 0 3.53 0.00 3.68 0.00 0.00 0.00 2.21 1.73 3.71 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 80 ER18d ExonRegion 0 1.06 0.00 2.76 0.00 0.00 0.00 0.00 0.43 0.31 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 81 IG25 Intergenic 0 14.09 19.11 14.36 26.96 33.33 36.48 14.04 19.16 26.86 28.29 1.58 9.33 5.88 3.18 3.94 3.59 3.76 10.86 12.36 5.83 2.67 4.82 4.91 82 IG25_AR1 ActiveIntergenicRegion 0 17.58 14.29 14.63 32.75 26.10 32.01 13.82 25.05 34.58 32.98 1.81 9.20 5.16 2.28 5.76 2.02 3.67 9.88 14.83 5.35 1.45 5.86 5.60 83 IG25_SR1 SilentIntergenicRegion 0 11.08 17.12 13.80 22.96 38.43 38.89 12.82 14.91 25.53 26.78 1.18 7.31 5.24 3.63 3.23 3.15 3.36 10.67 13.07 5.25 3.06 3.29 5.32 84 IG25_AR2 ActiveIntergenicRegion 0 13.28 27.51 14.75 24.50 36.59 39.41 15.80 16.83 18.89 24.31 1.77 11.88 7.56 3.79 2.49 6.09 4.35 12.36 8.50 7.13 3.74 5.32 3.59