Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HS2ST1 Gene 0 28.60 23.75 25.77 16.02 32.98 33.39 33.77 24.23 23.85 32.35 67.86 186.00 81.13 75.53 57.70 112.44 40.06 22.50 22.75 18.32 85.04 157.05 105.42 2 370551 Transcript 0 4.01 2.33 3.05 1.12 3.92 0.89 4.24 4.82 2.45 2.78 6.38 18.12 4.59 11.94 15.55 16.81 5.64 4.06 1.65 1.45 6.66 15.68 15.65 3 370550 Transcript 0 37.58 37.23 41.96 24.60 55.20 72.68 83.83 35.79 48.75 54.92 169.25 370.94 164.49 201.40 121.36 385.05 84.30 99.47 70.99 46.41 217.62 353.14 379.65 4 370548 Transcript 0 17.26 0.26 2.36 3.21 8.22 5.74 2.42 6.49 2.31 2.54 0.20 7.43 1.75 0.47 2.23 3.15 2.53 0.13 0.46 0.18 0.53 14.51 3.65 5 356813 Transcript 0 0.33 0.20 0.70 0.40 0.47 0.43 0.75 0.44 0.68 1.21 4.59 3.40 2.21 5.60 3.64 9.03 3.43 2.21 1.06 1.21 13.27 4.98 7.60 6 490006 Transcript 0 63.73 0.20 0.80 0.22 1.52 6.77 0.98 3.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 22.17 10.73 7 471417 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 461990 Transcript 0 1.01 1.26 0.01 0.00 0.56 0.03 0.55 0.02 2.23 0.36 0.02 0.35 0.04 0.50 0.00 0.04 0.00 0.71 0.00 0.88 0.01 3.61 4.89 9 484933 Transcript 0 0.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.36 0.00 0.00 0.00 0.53 0.00 0.00 0.00 0.00 0.00 10 476432 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.04 2.11 0.00 0.00 0.00 0.00 0.00 11 467438 Transcript 0 1.17 0.07 0.40 0.15 0.46 0.16 0.40 0.48 0.62 0.50 0.69 0.00 0.79 1.14 0.74 0.95 0.85 0.08 0.00 0.15 0.44 1.93 1.53 12 469312 Transcript 0 0.66 0.61 0.18 0.00 0.54 0.00 0.13 0.00 0.00 0.00 0.00 3.23 1.95 0.27 0.21 0.30 0.67 0.46 0.00 0.21 0.00 1.09 4.10 13 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.63 0.91 0.00 0.42 0.29 2.78 0.00 0.00 4.42 3.45 8.17 4.85 2.89 0.00 0.33 5.85 0.26 11.20 14 ER1b ExonRegion 0 5.32 3.05 8.85 3.61 7.17 14.79 14.16 7.62 12.51 15.62 76.95 39.22 26.67 127.94 49.44 195.87 64.60 56.72 35.13 19.29 303.78 85.15 183.87 15 E1a_E5b KnownJunction 0 21.78 8.95 33.62 22.87 25.72 19.36 44.87 30.68 33.10 59.93 225.11 150.20 120.77 276.00 155.26 505.76 184.76 125.23 66.73 57.97 658.73 257.43 350.24 16 I1_SR1 SilentIntronRegion 1 2.74 0.00 4.60 1.17 1.16 0.40 2.84 4.78 2.37 4.32 5.07 1.83 7.19 1.24 17.08 28.73 8.69 3.56 5.25 5.26 4.41 0.00 6.11 17 I1_AR2 ActiveIntronRegion 1 0.00 0.00 1.23 1.36 0.00 0.00 0.66 1.73 0.00 1.91 3.87 4.33 3.13 1.62 14.02 38.64 6.60 5.24 6.37 4.26 6.61 0.00 2.94 18 I1_AR3 ActiveIntronRegion 0 6.15 3.69 2.63 3.94 6.59 1.11 12.16 2.34 2.55 4.28 1.46 23.93 12.19 0.81 8.37 24.81 6.80 2.05 3.20 2.25 2.50 0.63 7.22 19 I1_SR3 SilentIntronRegion 1 8.23 6.68 3.92 6.03 8.21 2.94 13.92 4.48 2.48 2.20 2.34 30.95 20.59 1.71 12.06 27.47 8.32 2.50 4.36 7.28 2.71 0.49 7.75 20 I1_SR1 SilentIntronRegion 0 3.44 2.40 2.91 3.36 4.98 1.13 10.77 2.71 1.54 2.71 2.11 29.23 16.97 1.02 5.26 25.23 6.71 1.61 3.54 6.93 3.26 1.01 7.45 21 I1_AR1 ActiveIntronRegion 0 4.68 2.79 1.80 3.55 3.68 2.09 11.69 2.96 1.48 3.16 2.47 25.48 11.12 1.24 8.37 29.36 6.18 4.35 6.07 5.13 3.92 1.64 8.66 22 I1_SR2 SilentIntronRegion 1 12.66 5.15 6.23 5.52 8.23 2.30 13.26 7.14 4.78 7.36 2.21 33.78 21.05 1.66 12.05 31.47 6.49 3.98 5.72 6.51 4.27 1.69 9.29 23 I1_SR3 SilentIntronRegion 0 6.64 3.45 3.38 6.47 8.39 2.07 11.37 4.90 4.73 4.57 1.49 29.15 13.49 1.25 9.85 25.21 6.45 2.93 4.09 6.13 1.81 1.39 8.46 24 ER2a ExonRegion 0 0.00 0.00 0.02 0.00 1.17 0.00 1.70 0.00 0.79 0.73 0.11 18.74 5.24 0.63 0.90 9.07 4.24 0.03 1.37 0.00 1.04 0.05 2.59 25 E2_Da NovelBoundary 0 7.41 0.00 0.00 3.96 7.64 0.00 11.84 0.00 3.30 1.67 0.00 17.26 6.98 0.00 0.00 20.85 18.79 10.11 0.00 2.56 0.00 0.00 8.37 26 E2a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 I2_SR3 SilentIntronRegion 0 0.00 0.00 0.00 0.00 3.44 0.00 3.22 3.46 0.00 0.00 1.38 24.43 19.43 0.00 3.73 9.77 6.60 0.00 0.91 2.13 0.00 0.00 0.00 28 I2_AR5 ActiveIntronRegion 1 0.00 0.99 0.00 1.36 1.08 0.49 1.22 2.05 1.45 0.48 1.29 44.99 9.58 1.41 3.86 5.61 1.24 0.00 3.42 0.83 0.52 1.09 1.18 29 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER5a ExonRegion 0 1.00 0.60 2.09 1.20 1.42 1.29 2.26 1.32 2.03 3.64 13.76 10.19 6.62 16.81 10.92 27.10 10.29 6.63 3.19 3.63 39.80 14.95 22.80 32 ER5b ExonRegion 0 17.61 18.23 34.62 17.28 42.91 44.37 49.73 30.31 49.61 55.53 240.12 320.25 198.89 309.16 155.18 418.92 184.41 101.77 53.92 72.93 470.37 357.26 390.02 33 E5a_E6a KnownJunction 0 40.75 43.35 30.48 12.62 74.62 35.55 69.95 32.74 55.29 54.29 263.75 415.19 294.95 269.94 183.82 248.57 196.45 74.78 73.60 84.18 269.84 371.01 364.59 34 ER6a ExonRegion 0 19.02 32.14 41.49 14.48 62.29 31.09 56.31 36.70 47.78 59.68 241.34 577.63 344.39 253.12 136.93 302.47 154.80 73.29 48.60 52.65 205.94 398.85 317.46 35 E6a_E7a KnownJunction 0 35.41 33.09 58.07 17.38 91.77 53.83 48.31 40.99 51.50 71.45 207.53 750.69 449.81 272.71 147.97 378.70 137.26 60.15 60.90 65.52 206.46 383.08 294.08 36 ER7a ExonRegion 0 30.59 38.65 34.80 13.57 66.14 66.97 85.04 35.17 50.16 57.48 226.29 741.77 349.73 351.53 178.23 456.64 171.86 96.22 63.04 56.13 347.87 419.64 394.95 37 E7a_E8a KnownJunction 0 32.30 44.27 33.80 8.92 88.29 82.57 92.04 31.09 48.12 80.48 278.39 544.83 275.96 303.26 179.12 483.98 177.84 113.75 73.88 70.63 543.27 373.10 392.76 38 ER8a ExonRegion 0 21.68 29.92 31.61 18.59 57.75 49.40 81.14 25.57 52.14 67.15 242.07 701.77 248.62 325.59 131.83 490.61 151.50 143.94 73.17 52.82 584.93 333.72 423.39 39 E8_Da KnownBoundary 0 6.22 12.50 6.30 3.56 18.93 0.00 21.60 6.53 3.96 9.72 14.74 55.67 40.26 26.43 22.25 51.10 12.53 24.75 0.00 3.26 18.35 49.72 19.97 40 E8a_E9a KnownJunction 1 13.85 34.40 25.07 22.47 55.60 52.07 58.47 22.92 50.52 71.21 196.47 740.04 120.77 393.26 108.91 687.17 175.03 119.76 136.66 49.41 663.30 490.24 637.15 41 ER8b ExonRegion 0 8.02 4.66 6.10 2.24 7.84 1.14 7.57 9.65 4.48 5.27 9.98 36.24 9.19 19.46 27.65 25.45 6.43 5.23 3.31 2.57 7.46 31.10 20.11 42 ER9a ExonRegion 0 15.46 27.94 18.43 16.35 57.39 53.40 59.91 21.35 43.40 68.87 258.16 491.04 122.53 330.43 122.79 568.92 158.30 131.11 85.84 56.61 566.79 357.89 488.23 43 E9a_E10a KnownJunction 1 31.19 20.85 28.30 15.48 43.55 80.75 96.45 23.17 50.20 41.93 210.63 359.22 164.11 272.06 128.19 573.44 98.83 163.49 97.60 57.72 312.41 395.87 579.79 44 E9a_E12e KnownJunction 1 3.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.41 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 45 ER10a ExonRegion 0 43.98 53.60 55.62 33.72 66.86 64.60 71.21 48.41 47.29 67.90 127.87 382.66 164.86 130.74 114.52 196.65 69.78 35.46 44.38 35.10 122.84 310.41 179.51 46 E10_Da NovelBoundary 0 3.78 6.71 3.10 1.76 7.72 6.98 10.73 6.65 0.00 15.28 2.68 6.30 7.14 2.12 10.75 13.07 0.00 0.00 4.80 0.00 0.00 8.82 4.35 47 E11_Aa NovelBoundary 0 23.19 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.72 12.29 48 ER11a ExonRegion 0 63.73 0.20 0.80 0.22 1.52 6.77 0.98 3.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 22.17 10.73 49 E11_Ab KnownBoundary 0 26.67 0.00 1.63 0.00 3.57 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 3.09 10.90 4.35 50 E11_Ac KnownBoundary 0 233.52 15.00 0.00 6.56 22.24 72.80 14.18 8.13 1.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 65.40 45.41 51 ER11b ExonRegion 0 141.81 8.90 1.23 5.54 12.54 44.24 8.61 8.10 0.85 0.00 0.00 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 3.44 50.40 35.06 52 ER11c ExonRegion 0 88.45 3.74 3.21 5.79 15.00 51.27 6.91 15.47 3.06 2.03 1.59 0.00 0.00 0.45 0.00 0.00 0.00 0.58 0.00 0.00 1.88 49.43 33.46 53 E11a_E12e KnownJunction 0 9.56 0.00 1.33 2.90 8.66 21.12 0.00 13.88 1.39 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 54.62 23.56 54 ER12a ExonRegion 0 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 55 ER12b ExonRegion 0 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 56 ER12c ExonRegion 0 1.07 0.00 1.01 0.00 0.00 0.60 0.90 0.00 0.24 0.00 1.78 0.00 0.00 1.16 0.38 0.00 0.93 1.02 0.00 0.00 0.41 2.24 2.70 57 E12_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.38 2.03 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.39 0.00 58 E12a_E12e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.04 2.11 0.00 0.00 0.00 0.00 0.00 59 E12_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 E12b_E12d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 ER12d ExonRegion 0 2.12 0.00 0.00 0.00 0.00 1.83 1.32 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 62 ER12e ExonRegion 0 0.57 0.00 0.00 0.00 0.39 0.02 0.22 0.00 0.06 0.00 0.28 0.00 0.00 0.00 0.30 0.00 0.48 0.00 0.00 0.31 0.00 0.42 1.57 63 E12_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.06 4.01 64 ER12f ExonRegion 0 0.56 0.00 0.00 0.00 0.58 0.00 0.45 0.44 1.56 0.00 0.05 0.00 0.00 0.91 0.35 2.61 0.00 0.59 0.00 0.36 0.37 1.99 1.04 65 E12_Dc KnownBoundary 0 3.78 0.00 0.00 0.00 3.82 0.00 0.00 0.00 0.00 0.00 2.00 0.00 0.00 0.00 0.00 3.50 0.00 2.07 0.00 0.00 0.00 0.00 3.59 66 E12c_E12e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 ER12g ExonRegion 0 1.77 0.15 0.80 0.30 0.54 0.29 0.58 0.96 1.19 0.99 1.10 0.00 1.58 2.28 1.18 1.91 1.21 0.16 0.00 0.00 0.88 3.44 1.50 68 E12_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.27 0.00 0.00 0.00 0.00 4.83 0.00 0.00 0.00 0.00 0.00 0.00 3.15 2.69 4.35 69 ER12h ExonRegion 0 20.92 0.00 10.66 14.47 15.46 24.12 1.91 21.46 7.96 3.64 1.67 6.12 0.09 5.18 7.56 3.09 3.40 2.27 0.64 0.00 5.70 78.69 37.67 70 E12_Dd KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 0.00 0.00 5.25 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 7.68 71 E12d_E12f KnownJunction 0 14.00 0.00 4.82 0.00 0.00 8.52 1.68 6.12 1.30 1.67 3.90 6.30 0.00 4.41 0.00 6.92 0.00 0.00 0.00 0.00 0.00 7.90 4.27 72 E12d_E14a KnownJunction 0 37.56 0.00 7.36 22.41 10.95 19.53 0.00 26.29 8.54 9.27 0.00 0.00 0.00 2.47 5.32 0.00 0.00 5.39 4.80 0.00 5.68 59.76 50.71 73 ER12i ExonRegion 0 1.01 1.26 0.01 0.00 0.56 0.03 0.55 0.02 2.23 0.36 0.02 0.35 0.04 0.50 0.00 0.04 0.00 0.71 0.00 0.88 0.01 3.61 4.89 74 E12_Af KnownBoundary 0 7.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.26 0.00 6.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 0.00 0.00 3.00 3.33 75 ER12j ExonRegion 0 4.69 0.00 2.85 0.62 1.05 1.92 1.27 1.44 1.79 1.94 1.30 3.55 3.45 2.31 1.99 4.96 1.01 0.63 0.00 0.00 2.44 9.36 8.63 76 E12_De KnownBoundary 0 5.78 0.00 2.69 0.00 3.82 2.16 0.00 0.00 0.00 2.71 0.00 0.00 0.00 6.59 0.00 4.36 0.00 0.00 0.00 0.00 5.93 20.08 12.46 77 ER12k ExonRegion 0 4.37 0.31 1.74 0.31 1.60 2.84 0.20 1.53 0.73 2.18 0.92 4.27 3.57 3.37 0.93 6.90 0.00 0.00 0.96 0.00 1.76 14.73 11.97 78 E12_Df KnownBoundary 0 0.00 0.00 2.54 0.00 3.65 2.90 0.00 6.70 1.74 1.67 2.05 17.71 6.33 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.62 7.68 79 ER12l ExonRegion 0 1.80 0.00 0.71 0.00 0.83 2.58 0.00 2.74 3.50 0.36 1.52 9.90 5.73 0.50 0.00 5.57 0.00 0.00 0.00 0.00 0.00 12.67 6.95 80 E12_Dg KnownBoundary 0 2.96 0.00 1.71 0.00 0.00 0.00 0.00 2.55 4.20 1.05 0.00 12.60 0.00 0.00 0.00 4.27 0.00 0.00 0.00 0.00 0.00 11.02 8.71 81 ER12m ExonRegion 0 5.54 0.71 1.04 0.75 2.12 1.13 1.21 1.88 2.22 0.76 0.76 2.92 2.67 1.51 0.99 3.27 0.66 0.07 0.00 0.53 1.69 8.35 4.87 82 ER12n ExonRegion 0 1.76 0.00 1.63 0.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 83 ER13a ExonRegion 0 1.32 1.23 0.37 0.00 1.08 0.00 0.27 0.00 0.00 0.00 0.00 6.47 3.89 0.54 0.41 0.60 1.33 0.93 0.00 0.43 0.00 2.18 3.85 84 E13a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 85 E14_Aa NovelBoundary 0 3.19 0.00 0.00 1.93 4.24 16.64 0.00 1.68 4.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 86 ER14a ExonRegion 0 108.75 2.31 10.26 16.75 19.66 54.09 6.20 25.33 15.95 8.24 1.43 0.46 0.89 3.47 7.35 2.51 1.01 2.00 0.20 0.22 3.55 65.88 37.21 87 E14_Da KnownBoundary 0 188.40 6.05 13.31 11.29 40.49 114.82 12.94 20.41 17.74 16.63 2.53 0.00 6.82 4.71 11.37 0.00 0.00 0.00 0.00 0.00 0.00 59.89 43.11 88 ER14b ExonRegion 0 89.24 2.97 7.28 10.11 29.23 45.84 5.33 20.55 14.16 11.27 0.00 2.00 0.88 2.28 9.55 0.83 3.70 1.54 0.00 0.60 0.00 61.98 22.53 89 E14_Db KnownBoundary 0 107.65 0.00 12.27 11.45 20.71 35.04 6.23 21.24 18.37 9.99 0.00 18.91 0.00 4.41 4.45 0.00 0.00 0.00 0.00 0.00 0.00 75.56 11.44 90 ER14c ExonRegion 0 51.78 0.77 7.07 9.63 23.50 17.22 5.56 19.46 6.15 6.89 0.49 3.55 0.00 0.78 5.78 0.38 3.34 0.35 0.00 0.54 0.56 43.49 8.35