Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ATG4C Gene 0 41.15 21.34 29.43 22.74 53.52 50.83 35.08 26.81 26.22 34.88 87.17 148.36 159.90 152.31 123.99 70.45 105.90 11.02 8.77 12.14 11.85 38.53 16.03 2 443289 Transcript 0 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 2.00 7.50 0.00 2.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 317868 Transcript 0 2.96 0.00 0.00 2.06 16.30 2.56 0.00 0.00 4.08 3.65 20.37 0.00 27.92 14.83 9.39 4.10 7.48 0.00 0.00 0.00 2.53 3.12 0.00 4 371120 Transcript 0 7.11 3.09 1.77 2.06 4.07 5.79 0.00 1.56 1.45 0.00 5.37 6.30 22.24 14.66 5.56 8.29 22.81 0.00 0.00 3.52 0.00 2.63 0.00 5 371118 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.35 2.32 0.00 2.67 0.73 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.73 6 414558 Transcript 0 1.95 0.00 0.64 0.48 3.68 1.08 1.72 0.81 0.43 0.40 0.68 4.99 2.92 2.41 1.79 1.39 1.54 0.22 0.00 0.50 0.00 0.49 0.37 7 IG22_SR1 SilentIntergenicRegion 0 7.89 6.17 20.84 5.99 13.43 12.76 5.79 6.78 10.31 5.47 1.33 1.17 0.35 2.32 1.00 2.41 2.40 9.22 8.37 1.12 5.53 1.69 2.97 8 IG22_AR1 ActiveIntergenicRegion 0 12.18 9.00 22.28 7.36 20.47 26.09 8.53 14.84 11.27 11.65 0.26 2.87 0.00 1.72 2.04 3.59 3.10 4.94 4.70 2.57 5.92 1.40 4.34 9 IG22_AR3 ActiveIntergenicRegion 0 7.86 1.56 14.23 2.15 2.09 1.21 2.85 2.35 1.69 1.39 1.26 0.00 2.20 0.42 0.88 0.00 0.64 0.00 2.39 0.00 1.53 0.00 3.06 10 ER1a ExonRegion 0 18.30 13.48 0.98 2.62 14.85 17.27 15.10 0.19 0.99 1.29 26.57 6.28 9.38 84.67 69.22 30.64 45.31 4.22 1.05 0.00 8.98 10.78 5.07 11 E1_Da KnownBoundary 0 11.11 6.58 0.00 4.13 3.65 11.58 6.67 0.00 3.27 1.53 28.90 6.30 20.13 59.57 48.71 34.52 28.33 7.01 8.66 0.00 6.30 0.00 8.71 12 E1a_E3a KnownJunction 0 7.11 3.09 1.77 2.06 4.07 5.79 0.00 1.56 1.45 0.00 5.37 6.30 22.24 14.66 5.56 8.29 22.81 0.00 0.00 3.52 0.00 2.63 0.00 13 ER1b ExonRegion 0 5.07 1.86 0.08 3.58 8.08 8.10 2.32 0.00 3.65 2.20 23.11 8.21 23.45 34.24 16.62 25.51 16.71 6.43 4.78 0.00 2.62 1.09 2.88 14 E1b_E3a KnownJunction 0 2.96 0.00 0.00 2.06 16.30 2.56 0.00 0.00 4.08 3.65 20.37 0.00 27.92 14.83 9.39 4.10 7.48 0.00 0.00 0.00 2.53 3.12 0.00 15 E1b_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 2.00 7.50 0.00 2.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.12 0.00 0.00 0.35 2.32 0.00 2.67 0.73 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.73 17 ER3a ExonRegion 1 13.58 9.80 9.70 9.54 18.20 8.89 5.87 12.13 8.52 12.54 131.69 56.21 106.85 86.76 34.38 24.42 169.78 1.26 3.13 9.43 29.82 12.81 13.12 18 E3_Ab KnownBoundary 1 29.86 25.06 23.83 18.68 28.95 18.68 10.51 22.80 18.52 20.79 216.84 112.84 142.36 155.57 71.20 50.24 345.68 5.10 3.58 25.38 60.54 18.61 32.27 19 ER3b ExonRegion 0 10.08 17.48 27.75 20.72 24.72 20.26 15.64 20.23 21.56 27.21 132.06 148.65 168.79 262.84 151.62 191.95 212.40 28.84 21.20 22.01 18.10 52.86 46.46 20 E3a_E4a KnownJunction 0 17.71 23.29 30.48 29.07 28.95 46.68 34.40 28.34 14.96 25.41 87.23 196.86 231.80 224.56 133.38 190.21 119.59 25.00 25.79 17.32 5.44 42.37 48.40 21 ER4a ExonRegion 1 17.86 25.44 28.13 16.31 54.95 91.21 53.83 20.80 26.63 26.41 84.33 262.76 264.76 163.49 102.65 87.78 107.99 17.27 11.87 14.59 6.14 39.71 20.73 22 E4a_E5a KnownJunction 0 21.78 47.89 32.85 8.29 50.51 116.24 43.59 9.90 37.41 38.41 84.55 245.63 243.82 249.34 130.42 73.66 158.49 11.15 4.33 15.02 9.08 46.48 31.33 23 ER5a ExonRegion 0 51.89 27.89 26.99 23.01 37.28 44.99 30.26 27.31 37.00 34.86 176.81 286.87 229.21 316.78 154.71 166.48 235.32 34.78 15.33 18.96 34.69 55.93 34.66 24 E5a_E6a KnownJunction 0 27.86 9.08 25.78 24.24 19.61 29.64 26.50 43.87 28.70 47.73 199.21 196.71 183.75 285.13 156.50 196.62 240.02 44.31 12.61 3.13 35.52 47.52 29.02 25 ER6a ExonRegion 0 28.21 14.64 23.24 15.89 50.62 49.90 27.56 36.69 28.21 39.33 205.49 195.61 153.39 327.38 147.82 196.99 222.19 35.17 17.55 6.70 26.73 57.69 23.78 26 E6_Da KnownBoundary 0 22.15 18.09 21.35 9.72 86.50 70.58 38.64 41.44 36.89 44.94 228.06 192.21 136.68 286.72 158.11 133.13 195.51 25.54 29.27 12.02 28.23 32.82 8.54 27 ER6b ExonRegion 0 33.99 15.77 30.18 13.37 54.85 55.59 46.01 39.36 24.47 50.40 188.58 185.52 190.23 311.72 160.89 163.75 189.19 26.78 22.05 14.11 20.28 42.97 38.31 28 E6_Db KnownBoundary 0 26.97 17.83 33.97 22.11 27.50 99.03 83.73 48.47 18.49 48.65 205.42 226.27 186.68 233.09 170.84 113.90 175.22 18.61 25.79 22.75 17.61 54.80 39.61 29 ER6c ExonRegion 0 59.78 16.89 31.67 16.57 51.30 61.56 46.70 31.98 23.66 52.51 145.03 231.32 199.36 243.10 173.28 142.66 196.97 15.73 17.19 19.65 16.32 53.00 24.83 30 E6c_E7a KnownJunction 0 60.46 25.46 29.18 17.11 80.31 57.98 52.55 30.60 29.60 53.21 166.94 271.74 204.86 297.25 286.17 110.40 207.67 10.61 26.26 21.03 20.63 69.50 20.91 31 E7_Aa NovelBoundary 0 5.48 0.00 7.98 4.49 16.72 11.24 24.51 6.16 6.86 7.33 2.68 55.82 13.64 5.12 0.00 7.78 8.88 0.00 0.00 0.00 0.00 0.00 0.00 32 ER7a ExonRegion 0 66.41 22.28 29.65 16.84 46.56 55.83 47.99 35.49 37.52 48.17 168.94 196.94 177.70 292.23 229.46 114.46 211.40 11.21 17.48 24.78 21.20 78.57 31.78 33 E7a_E8a KnownJunction 0 84.01 23.09 33.59 21.04 66.89 98.98 64.12 23.82 32.73 44.32 177.94 269.94 129.21 228.21 169.36 102.54 141.56 11.61 9.22 34.64 5.07 52.17 23.47 34 E7a_E9a NovelJunction 0 0.00 3.29 0.00 0.00 20.12 2.73 16.78 0.00 0.00 4.46 2.11 0.00 0.00 11.42 0.00 7.78 4.68 0.00 0.00 0.00 2.59 0.00 0.00 35 ER7b ExonRegion 0 71.39 20.34 30.78 15.78 50.12 77.44 60.24 30.25 36.82 43.76 177.75 219.64 131.14 240.62 179.99 105.17 186.63 10.66 8.94 27.74 6.10 62.51 33.09 36 ER7c ExonRegion 0 2.12 0.00 0.00 0.00 5.35 0.00 0.00 0.00 0.00 0.00 0.00 8.66 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER8a ExonRegion 0 72.73 22.86 30.66 23.69 67.32 71.45 50.37 32.70 40.28 41.49 153.07 255.06 200.47 247.71 220.98 124.27 192.51 6.37 9.72 22.22 13.62 51.46 19.36 38 E8a_E9a KnownJunction 0 88.31 12.23 31.05 24.37 39.73 67.86 50.04 37.30 52.49 58.59 204.79 285.24 237.48 354.64 283.08 133.30 178.31 15.75 12.61 11.95 22.73 68.15 14.60 39 ER9a ExonRegion 0 53.53 17.79 32.28 21.67 51.89 82.78 47.43 32.73 43.01 45.22 221.11 266.62 221.14 276.33 258.58 114.52 219.82 8.30 4.92 14.33 23.10 56.65 27.84 40 E9a_E10a KnownJunction 0 71.79 18.48 27.97 28.60 53.31 61.73 66.11 32.16 45.72 26.65 158.20 251.18 219.30 259.17 267.88 89.81 194.39 4.10 17.79 8.56 11.86 43.48 42.68 41 ER10a ExonRegion 0 59.54 16.69 36.94 29.10 100.32 73.04 54.04 32.26 40.79 40.08 185.31 240.99 220.92 241.97 221.32 95.76 232.05 12.09 14.89 14.26 23.30 55.42 26.58 42 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 E10a_E12a KnownJunction 0 104.17 31.05 40.74 26.60 146.10 85.75 78.52 29.41 29.63 40.32 199.16 233.78 228.23 290.90 222.14 175.51 248.81 12.89 3.76 26.46 22.49 67.36 23.47 44 ER11a ExonRegion 0 3.75 0.00 1.92 1.44 5.69 3.25 5.16 0.82 1.30 1.21 2.05 6.31 8.76 7.23 2.48 4.17 4.61 0.65 0.00 1.51 0.00 1.48 1.10 45 I11_AR1 ActiveIntronRegion 1 1.81 3.34 0.00 1.36 2.68 4.45 7.94 1.73 1.24 0.00 1.52 15.15 33.84 4.41 3.73 2.76 9.43 0.00 0.00 2.13 0.00 0.00 0.00 46 I11_AR2 ActiveIntronRegion 0 0.00 2.35 0.00 0.31 0.82 3.67 6.21 1.73 0.29 0.00 3.87 8.66 37.16 6.37 5.36 0.00 3.30 0.00 0.00 0.65 0.00 0.00 0.00 47 E12_Aa NovelBoundary 0 6.96 0.00 4.32 7.23 7.81 10.16 27.87 2.55 3.50 1.42 5.16 6.30 35.55 4.94 15.08 11.62 26.27 1.82 0.00 0.00 0.00 0.00 0.00 48 ER12a ExonRegion 0 76.90 33.54 32.31 33.10 82.19 89.92 66.51 38.30 36.13 40.31 160.64 260.67 246.27 255.92 275.45 102.14 189.75 8.99 8.92 12.55 20.18 51.83 18.13 49 E12a_E13a KnownJunction 1 87.57 19.60 20.34 33.43 98.22 119.08 78.92 31.30 27.26 38.33 122.93 323.96 272.06 214.73 279.13 60.58 222.72 12.81 8.66 6.01 15.32 51.25 19.97 50 I12_SR3 SilentIntronRegion 0 12.70 4.25 8.56 6.56 21.67 12.57 8.72 5.59 7.24 6.94 4.44 14.80 21.45 8.06 11.45 5.34 5.96 1.99 2.11 3.16 0.50 3.40 0.97 51 I12_AR3 ActiveIntronRegion 1 39.74 9.11 14.05 12.68 31.44 14.96 13.02 11.65 8.53 8.51 11.16 8.09 22.48 9.27 27.28 9.40 20.84 2.66 2.11 5.35 1.19 1.82 0.79 52 E13_Aa NovelBoundary 0 11.26 6.38 25.75 14.58 42.02 13.12 18.28 17.46 17.04 16.47 7.16 20.11 51.62 13.19 48.71 11.71 17.30 1.95 0.00 5.56 2.97 3.00 0.00 53 ER13a ExonRegion 1 41.06 24.73 35.60 28.68 62.92 51.93 34.75 29.21 26.72 38.03 38.80 108.39 152.89 85.59 97.54 28.99 44.06 6.20 6.04 10.36 5.56 34.90 8.87