Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CRYZ Gene 0 40.65 15.57 36.09 14.94 34.77 39.35 24.52 26.16 18.74 34.08 199.18 177.59 277.06 260.95 316.97 87.81 185.52 13.63 24.30 12.15 45.26 92.83 33.59 2 417775 Transcript 0 3.42 1.17 0.54 0.67 1.22 1.99 1.81 2.99 1.10 3.45 30.33 4.62 6.29 28.85 32.21 10.79 35.31 3.21 2.53 2.43 6.41 3.45 5.61 3 370870 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 340866 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 370871 Transcript 0 0.00 0.00 4.52 0.00 0.00 2.61 2.25 1.60 4.80 4.70 64.33 37.21 53.24 69.93 120.40 50.67 110.14 5.80 0.00 0.00 8.34 19.84 27.23 6 370872 Transcript 0 1.89 0.00 0.00 2.06 3.57 5.88 0.00 2.38 0.00 1.11 6.50 0.00 0.00 13.30 2.23 2.18 6.59 0.00 0.00 0.00 0.00 6.98 3.46 7 441120 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.04 0.00 1.75 1.90 0.00 2.19 0.76 4.87 0.00 6.84 0.00 0.00 0.00 0.02 1.59 0.00 8 395054 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 492102 Transcript 1 11.59 5.34 6.07 5.21 9.43 5.10 5.19 6.02 3.51 5.99 23.90 32.64 101.23 29.20 30.26 14.15 29.72 0.88 2.97 1.23 6.58 13.74 3.86 10 ER1a ExonRegion 0 3.42 1.17 0.54 0.67 1.22 1.99 1.81 2.99 1.10 3.45 30.33 4.62 6.29 28.85 32.21 10.79 35.31 3.21 2.53 2.43 6.41 3.45 5.61 11 E1_Ab KnownBoundary 1 10.52 16.44 0.00 0.00 0.00 8.46 2.25 9.73 6.92 9.80 100.76 18.46 0.00 21.96 26.33 25.46 63.86 27.23 9.60 9.33 6.30 0.00 0.00 12 E1_Ac KnownBoundary 0 7.11 2.96 0.00 3.50 7.72 39.92 9.58 3.90 1.56 1.48 63.54 0.00 12.66 38.08 40.55 63.49 55.26 5.76 9.51 2.81 5.75 5.33 33.63 13 ER1b ExonRegion 1 12.43 9.05 6.01 4.31 9.06 30.70 12.00 17.67 12.75 18.46 121.96 12.71 20.42 52.39 123.54 54.27 103.82 13.77 12.74 16.75 15.35 12.17 24.91 14 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1_Ae KnownBoundary 1 35.12 3.35 33.38 13.38 0.00 15.62 18.59 21.48 16.26 52.03 97.66 7.65 45.13 76.70 88.26 30.42 128.19 3.94 13.27 19.75 24.53 43.54 31.58 16 ER1c ExonRegion 1 21.69 8.13 26.04 12.44 14.72 38.74 18.87 30.90 20.38 47.02 151.25 9.74 45.14 81.00 199.82 65.76 155.97 16.17 13.14 35.37 28.10 38.55 38.18 17 ER1d ExonRegion 1 26.46 8.64 30.63 14.99 20.07 45.84 25.49 34.57 22.23 60.21 178.79 9.74 56.28 130.34 230.65 89.91 202.18 17.09 21.50 40.43 45.73 68.76 50.66 18 ER1e ExonRegion 1 42.84 7.28 38.97 19.98 48.08 47.26 43.56 30.36 18.01 61.17 331.46 25.28 78.67 564.59 434.21 203.69 442.43 19.61 46.03 31.19 83.63 129.28 45.00 19 E1a_E3a KnownJunction 1 0.00 0.00 0.00 2.86 26.83 0.00 3.27 4.15 1.48 3.65 97.97 7.50 53.89 55.80 58.97 36.14 221.22 2.57 0.00 2.49 15.20 10.78 0.00 20 E1a_E4a KnownJunction 1 32.38 5.66 26.34 12.49 38.62 14.76 29.72 16.47 8.30 30.11 207.74 36.31 99.02 194.30 149.08 147.23 256.47 16.42 32.94 13.74 37.93 99.20 18.78 21 E1a_E5a KnownJunction 0 3.78 0.00 0.00 2.06 7.13 11.75 0.00 2.34 0.00 0.00 0.00 0.00 0.00 2.47 4.45 4.36 3.74 0.00 0.00 0.00 0.00 5.02 3.16 22 E2_Aa NovelBoundary 0 0.00 0.00 0.00 0.00 4.33 6.98 0.00 0.00 1.62 1.07 39.22 0.00 26.62 19.95 56.00 15.47 29.08 5.60 13.65 0.00 10.32 5.45 4.01 23 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.82 1.33 0.00 4.38 1.52 9.74 0.00 5.35 0.00 0.00 0.00 0.05 0.56 0.00 24 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.69 2.47 0.00 0.00 0.00 0.00 0.00 8.32 0.00 0.00 0.00 0.00 2.63 0.00 25 ER3a ExonRegion 1 0.05 0.00 0.00 0.87 11.66 0.00 0.41 1.95 2.47 1.79 61.01 8.99 59.41 31.23 36.45 14.25 97.25 2.37 0.16 0.60 3.28 4.54 0.00 26 E3a_E4a KnownJunction 1 0.00 0.00 0.00 0.00 8.49 0.00 0.00 1.56 1.79 0.00 65.81 29.86 31.98 15.60 34.61 0.00 68.91 2.03 0.00 0.00 2.35 3.12 0.00 27 Ix_AR1 ActiveIntronRegion 0 4.74 1.82 0.00 1.85 1.25 1.49 1.56 1.67 0.86 4.23 23.90 22.32 55.65 22.52 20.22 4.46 19.63 1.50 0.00 2.37 6.24 3.80 0.00 28 ER4a ExonRegion 1 15.84 3.43 30.36 14.52 12.45 14.00 9.45 31.67 22.45 50.90 496.24 117.35 192.48 418.55 337.60 177.30 531.55 36.42 44.47 28.28 152.96 105.15 84.97 29 E4a_E5a KnownJunction 1 63.42 11.45 68.89 22.14 28.01 19.42 7.46 39.72 32.18 57.78 455.22 137.14 465.55 990.88 890.54 571.73 509.49 83.36 119.63 17.77 132.51 353.38 278.20 30 ER5a ExonRegion 0 30.70 15.22 39.76 22.23 52.19 90.08 53.49 31.78 33.86 48.78 404.46 187.95 247.38 623.24 512.14 258.13 443.83 52.18 55.50 24.84 145.30 154.94 98.12 31 E5a_E6a KnownJunction 0 64.23 43.02 41.13 24.71 30.90 112.89 57.54 31.54 28.85 50.45 522.55 195.81 314.10 601.75 432.17 188.33 500.51 31.17 36.14 26.72 179.96 127.30 57.45 32 E5a_E8a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 2.42 0.00 2.23 13.00 0.00 0.00 24.13 0.00 0.00 9.44 0.00 0.00 0.00 0.00 8.94 3.76 33 ER6a ExonRegion 0 83.68 23.16 70.36 29.11 38.78 77.53 47.00 40.69 40.82 50.95 538.01 273.26 407.06 790.63 626.79 246.23 571.52 62.14 57.22 25.58 212.55 166.22 91.09 34 E6a_E8a KnownJunction 0 60.68 14.73 78.44 28.13 67.06 71.27 80.95 41.94 41.41 49.80 476.80 272.04 279.53 871.51 541.94 269.33 545.67 38.43 39.34 29.40 192.31 125.47 94.41 35 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 ER8a ExonRegion 0 60.48 5.98 74.96 22.17 42.40 59.56 39.08 50.22 35.27 43.63 482.70 252.77 281.13 742.10 585.33 238.40 458.13 46.19 49.19 23.61 148.75 165.36 77.65 37 E8a_E9a KnownJunction 0 88.24 9.01 69.63 29.03 41.77 53.21 23.94 44.24 31.97 41.96 469.12 243.68 354.36 651.42 716.49 231.48 366.53 64.46 84.33 22.82 149.81 210.40 84.77 38 ER9a ExonRegion 0 77.18 18.13 74.64 28.67 68.30 112.69 46.12 41.12 37.61 59.87 549.82 240.64 596.24 776.32 706.22 228.23 522.82 50.30 78.17 23.85 136.33 200.78 94.65 39 E9_Da NovelBoundary 0 45.27 16.05 47.04 23.77 35.65 40.77 21.07 15.53 19.56 33.58 285.76 101.58 169.31 363.71 286.92 75.11 260.96 25.78 29.74 12.85 43.80 92.52 68.89 40 E9b_E10b KnownJunction 0 91.50 23.09 69.13 29.73 87.01 85.80 75.47 32.00 33.54 68.50 529.19 229.27 515.71 766.32 740.72 147.65 345.77 41.58 45.08 24.48 95.63 188.23 85.62 41 E9b_E10c KnownJunction 0 0.00 0.00 4.52 0.00 0.00 2.61 2.25 1.60 4.80 4.70 64.33 37.21 53.24 69.93 120.40 50.67 110.14 5.80 0.00 0.00 8.34 19.84 27.23 42 ER9b ExonRegion 0 71.77 20.15 68.29 27.88 70.06 74.19 56.81 29.70 33.68 66.10 609.04 247.17 480.94 813.09 726.63 191.57 469.33 51.74 52.41 23.79 98.17 200.96 115.06 43 Ix Intron 0 4.46 3.36 2.81 1.85 4.12 5.43 5.51 4.40 4.30 7.99 33.92 56.38 110.96 31.01 15.60 18.12 30.85 1.73 3.63 1.94 6.52 17.21 3.85 44 Ix_SR1 SilentIntronRegion 0 4.47 3.36 2.81 1.85 4.12 5.44 5.51 4.41 4.30 8.00 33.96 56.44 111.09 31.05 15.61 18.14 30.88 1.73 3.63 1.94 6.53 17.23 3.85 45 E10_Aa NovelBoundary 1 13.41 0.00 1.83 2.63 4.33 5.79 2.25 16.68 2.75 10.61 54.75 18.91 204.37 29.78 29.92 24.35 74.80 2.45 8.66 0.00 9.45 34.60 7.51 46 ER10a ExonRegion 1 11.49 4.10 4.29 3.10 7.20 6.89 5.53 6.53 4.54 9.32 30.61 38.19 126.51 36.94 31.60 20.40 38.79 1.30 4.16 2.02 9.06 11.49 4.92 47 E10_Ab KnownBoundary 0 32.45 6.64 3.67 1.53 12.14 0.00 8.52 6.37 3.24 7.82 6.79 25.21 94.96 14.48 22.75 4.36 12.62 0.00 3.76 0.00 0.00 2.45 4.35 48 ER10b ExonRegion 0 148.22 35.82 67.15 46.57 79.89 119.70 74.01 42.37 40.76 76.85 554.51 416.85 635.38 682.05 648.80 218.50 464.53 35.56 63.03 26.52 102.64 200.00 70.57 49 E10_Da KnownBoundary 0 14.15 6.45 0.00 4.13 15.62 11.07 3.93 12.98 0.00 0.00 5.16 0.00 32.30 2.18 5.56 11.96 4.77 0.00 0.00 0.00 0.00 8.21 0.00 50 E10_Db KnownBoundary 0 2.89 0.00 0.00 0.00 2.97 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.00 4.65 0.00 3.16 4.49 0.00 0.00 0.00 0.00 0.00 0.00 51 E10b_E10c KnownJunction 0 146.17 55.58 94.59 52.94 146.86 135.72 93.32 50.85 48.35 91.30 486.60 404.53 815.69 735.48 985.11 289.50 490.42 44.52 89.13 58.23 101.62 224.97 102.09 52 ER10c ExonRegion 0 149.21 62.02 77.81 50.43 135.13 130.20 80.10 46.67 42.61 87.16 519.95 439.44 783.24 730.85 881.98 282.35 508.34 38.80 89.19 48.94 119.00 220.85 91.04 53 ER10d ExonRegion 1 11.69 6.59 7.86 7.31 11.66 3.31 4.86 5.52 2.48 2.66 17.18 27.09 75.94 21.46 28.91 7.91 20.65 0.46 1.78 0.45 4.10 16.00 2.80 54 E10_Ac KnownBoundary 1 7.26 13.16 9.25 9.52 36.93 2.50 10.20 6.45 4.89 3.22 14.32 31.81 125.80 18.78 37.58 19.40 29.17 0.00 8.85 0.00 2.47 17.88 3.93 55 ER10e ExonRegion 0 104.71 29.95 84.06 35.38 114.58 112.56 48.62 47.54 52.12 84.83 564.55 359.03 769.02 716.49 800.96 249.78 543.15 39.09 87.88 37.96 134.22 197.47 122.81 56 E10c_E11a KnownJunction 0 128.10 39.60 109.93 63.50 88.37 202.50 80.07 53.31 63.54 97.29 642.43 460.95 920.72 804.76 901.17 293.51 662.08 43.36 102.69 53.75 208.07 245.06 144.35 57 ER11a ExonRegion 0 116.21 49.80 89.85 34.71 91.56 91.06 60.37 60.26 37.67 70.13 401.58 459.44 587.15 532.95 790.41 156.62 305.02 16.58 53.56 25.69 60.67 242.76 67.25 58 E11_Da KnownBoundary 1 107.35 67.36 112.62 38.99 109.93 48.78 71.19 81.41 39.09 78.73 344.40 723.24 811.15 663.14 1419.87 120.65 234.13 6.05 50.92 29.08 29.84 353.62 57.02 59 ER11b ExonRegion 1 53.19 30.81 87.30 27.44 68.96 61.69 40.28 61.91 36.15 71.71 209.01 460.04 532.45 268.61 647.74 75.19 145.10 5.41 21.01 15.75 11.31 186.58 26.70 60 ER11c ExonRegion 0 10.58 0.00 3.06 0.68 2.68 5.50 1.32 1.73 0.00 1.15 13.53 10.82 21.11 12.99 29.01 0.00 1.65 1.85 0.00 0.00 0.00 0.00 0.00 61 ER11d ExonRegion 0 7.41 0.00 2.45 0.00 2.68 0.00 1.32 0.86 0.00 1.15 9.66 4.33 16.42 8.12 18.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00