Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LEPR Gene 0 22.44 3.41 4.00 2.47 20.66 19.61 5.85 7.24 15.55 5.97 2.57 5.87 2.78 1.70 1.53 0.68 1.08 3.08 1.46 1.68 17.04 71.06 25.42 2 371059 Transcript 0 5.23 6.46 2.74 0.24 19.67 5.29 16.51 0.00 1.24 1.08 4.55 4.07 0.00 3.15 0.00 4.72 3.30 2.72 0.94 6.63 0.52 0.00 0.52 3 371060 Transcript 0 7.80 1.39 3.87 1.94 10.98 2.22 7.46 2.73 2.67 0.18 0.00 0.00 3.70 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 23.91 0.00 4 349533 Transcript 0 4.27 2.79 0.57 1.23 2.49 16.68 1.75 4.38 12.42 2.75 0.18 0.59 0.46 0.33 0.42 0.18 0.22 0.34 0.26 0.63 0.91 4.99 5.25 5 462765 Transcript 0 3.30 0.00 0.00 0.00 2.39 0.00 0.20 0.00 2.24 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 1.08 0.00 0.00 14.56 11.18 15.16 6 371058 Transcript 0 0.96 0.00 0.00 0.00 0.61 1.25 1.51 0.00 0.42 0.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.99 2.37 2.01 7 344610 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 406510 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 431694 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 471762 Transcript 0 0.87 0.00 0.31 0.00 0.92 1.67 0.00 0.41 1.00 0.00 0.00 0.21 1.88 0.00 0.00 0.00 0.00 0.16 0.00 0.68 0.97 5.02 0.81 11 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 2.71 2.02 1.28 0.19 0.57 0.21 2.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 4.83 3.58 1.22 12 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER2a ExonRegion 0 2.78 0.94 0.00 0.00 2.15 5.24 3.66 2.43 3.75 0.95 2.26 0.00 0.99 0.00 0.00 1.02 2.22 1.19 0.00 2.60 10.99 17.63 7.69 14 E2a_E4a KnownJunction 0 0.00 2.89 0.00 0.00 0.00 2.27 1.81 2.55 6.08 0.00 0.00 0.00 6.17 0.00 0.00 4.36 0.00 0.00 0.00 0.00 2.35 14.51 8.62 15 Ix Intron 0 12.95 9.18 19.42 6.31 15.36 22.96 15.32 11.39 9.53 13.19 8.37 12.65 16.95 15.86 14.34 12.03 12.11 15.04 12.29 9.81 10.98 10.39 14.09 16 Ix_AR1 ActiveIntronRegion 0 5.37 2.86 14.92 2.86 10.56 19.68 5.22 10.88 9.85 11.55 9.26 8.25 10.03 10.92 10.24 10.89 13.95 21.49 8.98 11.39 14.89 5.28 18.20 17 Ix_SR2 SilentIntronRegion 0 17.22 12.71 22.29 8.26 18.27 25.31 20.97 11.98 9.63 14.40 8.14 15.28 21.00 18.85 16.86 12.96 11.51 12.15 14.35 9.27 9.27 13.32 12.37 18 Ix Intron 0 6.40 14.34 6.52 3.16 18.13 22.42 18.55 9.79 13.31 15.02 9.11 26.89 24.48 14.63 6.48 11.70 8.76 8.80 8.17 9.65 9.38 16.88 11.03 19 Ix_SR1 SilentIntronRegion 0 6.12 11.83 5.81 3.19 17.39 19.31 16.68 6.93 8.40 11.61 7.69 22.67 21.74 13.44 5.74 9.01 10.44 6.72 7.52 8.74 9.73 12.70 9.13 20 Ix_AR1 ActiveIntronRegion 0 7.25 21.90 8.68 3.08 20.41 31.77 24.19 18.38 28.06 25.26 13.41 39.59 32.73 18.25 8.73 19.79 3.77 15.05 10.12 12.39 8.38 29.43 16.74 21 Ix Intron 0 11.76 20.49 11.46 5.78 29.85 36.12 24.28 19.44 21.78 23.70 13.45 38.78 35.27 15.10 5.65 10.61 10.59 6.08 7.48 14.99 5.57 25.69 13.93 22 Ix_AR1 ActiveIntronRegion 0 8.39 18.00 8.69 4.56 31.11 39.49 24.84 18.38 26.26 22.36 13.02 29.98 34.05 15.40 7.69 12.17 7.85 4.99 6.31 15.74 4.95 27.24 17.46 23 Ix_SR1 SilentIntronRegion 0 10.48 13.13 3.17 0.00 13.93 37.65 19.57 8.41 9.93 16.08 12.37 30.78 40.29 16.26 1.26 14.72 9.07 6.23 1.50 16.71 10.70 17.12 17.30 24 Ix_AR2 ActiveIntronRegion 0 13.93 22.93 14.18 7.25 31.21 34.05 24.62 21.51 20.71 25.53 13.87 45.07 35.45 14.82 5.03 9.20 12.42 6.72 8.95 14.38 5.31 25.94 11.47 25 E3_Aa NovelBoundary 0 3.56 0.00 1.71 0.00 3.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.76 8.63 7.34 26 ER3a ExonRegion 0 2.90 0.00 0.00 0.00 0.45 0.00 0.41 0.00 1.62 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 11.44 16.80 22.54 27 E3a_E4a KnownJunction 0 3.70 0.00 0.00 0.00 4.33 0.00 0.00 0.00 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.67 5.57 7.77 28 E4_Ab NovelBoundary 0 11.26 0.00 0.00 1.80 0.00 9.99 0.00 0.00 11.72 4.51 14.48 0.00 0.00 0.00 5.07 0.00 0.00 4.35 0.00 0.00 48.19 36.37 18.27 29 ER4a ExonRegion 0 4.43 1.55 0.00 0.00 2.93 3.93 1.95 1.73 8.29 1.15 8.19 0.00 4.69 0.00 0.00 2.97 0.00 0.44 0.00 0.20 38.41 29.86 16.22 30 ER4b ExonRegion 0 4.23 0.00 0.00 0.00 0.55 13.12 5.64 5.32 9.82 2.26 7.53 9.10 0.60 1.33 0.00 0.30 0.00 3.27 0.00 0.00 60.91 46.80 33.13 31 E4a_E5a KnownJunction 0 7.04 0.00 0.00 0.00 0.00 25.10 8.35 10.72 12.53 3.87 2.32 18.91 0.00 2.94 0.00 0.00 0.00 5.10 0.00 0.00 53.81 49.84 54.12 32 ER5a ExonRegion 0 11.67 0.93 4.23 3.20 14.04 17.52 8.81 9.42 16.02 7.06 6.21 9.22 4.31 1.32 0.67 0.46 1.53 5.10 3.10 2.30 35.40 127.50 52.66 33 E5a_E6a KnownJunction 0 32.75 0.00 0.00 3.90 26.74 28.85 11.26 9.69 14.41 9.80 2.58 19.96 0.00 0.00 0.00 0.00 0.00 6.14 9.04 0.00 37.56 145.74 53.44 34 ER6a ExonRegion 0 16.54 0.87 2.31 2.33 26.35 28.47 9.36 6.13 20.31 12.61 9.38 21.05 10.63 3.39 0.05 0.55 0.11 5.96 4.52 0.88 41.20 205.03 61.17 35 E6a_E7a KnownJunction 0 21.71 0.00 3.67 0.00 19.44 21.64 12.54 4.68 26.27 8.78 9.48 18.91 6.82 4.94 0.00 4.36 0.00 4.10 3.76 0.00 60.67 244.63 88.35 36 ER7a ExonRegion 0 10.86 0.99 2.64 2.99 18.42 21.37 9.72 6.49 23.67 11.48 8.27 20.57 6.82 5.22 2.21 0.40 2.64 10.60 1.75 1.04 80.63 167.07 89.95 37 E7a_E8a KnownJunction 0 3.78 0.00 1.12 3.76 29.46 13.80 5.79 12.16 23.96 7.36 5.32 12.60 19.97 7.36 0.00 0.00 4.58 6.55 0.00 0.00 59.37 90.32 63.85 38 ER8a ExonRegion 0 14.08 0.71 2.57 5.68 20.87 20.52 9.97 7.21 30.42 11.41 4.02 12.54 7.97 2.85 3.22 2.08 4.16 19.48 1.99 2.38 43.03 148.47 117.37 39 E8a_E9a KnownJunction 0 34.75 0.00 2.78 3.10 24.70 23.23 14.62 8.91 19.27 10.40 2.37 12.00 0.00 4.59 0.00 0.00 4.77 14.47 3.76 6.39 64.00 155.10 48.49 40 ER9a ExonRegion 0 15.63 1.43 3.19 2.43 19.01 30.55 8.54 7.24 16.81 6.94 5.89 12.99 1.39 3.55 2.10 1.76 3.21 11.84 1.36 1.56 70.82 103.06 85.77 41 E9a_E10a KnownJunction 0 44.90 0.00 0.00 5.73 20.54 53.38 8.04 6.82 11.11 12.17 2.68 12.60 0.00 2.41 0.00 4.02 3.93 12.39 0.00 2.88 79.82 166.43 83.14 42 ER10a ExonRegion 0 15.27 2.23 1.60 1.67 17.56 25.08 9.24 8.94 24.97 9.34 8.99 12.53 2.88 3.34 1.08 0.68 2.19 9.47 2.23 2.62 53.97 158.38 81.02 43 E10a_E11a KnownJunction 0 20.67 2.89 0.00 4.03 23.51 31.97 15.15 5.09 15.57 3.20 14.74 0.00 7.63 4.47 0.00 0.00 4.77 5.76 0.00 2.94 69.19 148.80 40.89 44 ER11a ExonRegion 0 19.98 1.36 2.40 3.45 24.74 21.34 7.34 9.59 22.40 8.84 7.60 24.00 4.29 5.13 0.89 1.28 7.13 16.25 2.35 5.27 59.22 173.36 90.02 45 E11a_E12a KnownJunction 0 12.22 2.70 4.61 7.76 22.75 27.54 2.12 10.72 28.36 3.12 2.11 30.91 6.33 4.71 0.00 0.00 13.65 13.93 4.33 5.43 53.25 269.06 115.58 46 ER12a ExonRegion 0 24.66 2.82 3.46 4.85 22.66 23.75 7.27 11.30 21.13 10.08 8.20 15.17 3.61 4.43 2.90 0.76 4.62 7.21 4.97 5.32 72.11 169.30 78.20 47 E12a_E13a KnownJunction 0 30.01 5.46 3.81 2.00 34.38 18.63 10.47 9.20 16.03 13.05 4.58 6.15 6.82 0.00 0.00 0.00 0.00 3.56 7.62 6.26 92.42 97.36 39.10 48 ER13a ExonRegion 0 29.50 6.31 1.57 3.34 32.88 26.63 8.57 14.60 20.37 9.78 5.81 12.73 2.39 5.30 1.71 0.00 3.26 4.15 2.10 5.05 66.24 131.86 76.67 49 E13a_E14a KnownJunction 0 49.34 6.18 2.69 11.32 37.35 53.15 6.27 20.70 19.04 7.66 14.32 0.00 6.82 4.94 0.00 0.00 3.46 8.21 4.14 6.20 48.99 140.35 83.23 50 ER14a ExonRegion 0 31.46 15.25 7.66 3.36 25.15 24.29 5.34 11.69 17.69 8.09 10.41 10.90 1.70 4.92 1.31 0.95 1.18 6.69 1.27 5.81 65.89 142.33 70.52 51 E14a_E15a KnownJunction 0 49.19 12.83 5.20 2.06 37.01 57.81 20.01 9.20 10.10 8.30 10.06 6.30 0.00 5.18 0.00 0.00 0.00 6.67 0.00 3.07 59.99 136.43 52.24 52 ER15a ExonRegion 0 48.87 11.91 10.49 2.95 44.03 43.91 15.74 11.25 19.92 10.78 5.90 9.05 11.00 8.18 1.11 0.00 1.08 7.49 0.00 4.06 49.72 179.86 75.18 53 E15_Da NovelBoundary 0 104.09 2.57 11.89 3.93 55.60 39.58 16.16 15.03 26.94 13.51 6.69 12.60 0.00 4.89 0.00 0.00 4.30 4.68 0.00 3.07 39.48 284.18 108.41 54 E15b_E16a KnownJunction 0 61.27 2.83 6.09 1.43 36.25 25.84 8.74 11.62 19.88 14.24 4.47 12.15 13.64 7.06 0.00 0.00 0.00 4.85 0.00 0.00 42.44 232.26 80.67 55 ER15b ExonRegion 0 74.99 2.54 9.54 2.73 51.99 35.69 12.01 14.69 24.61 14.17 5.80 8.04 6.37 6.79 4.87 0.00 3.30 6.93 0.00 2.13 47.85 268.70 102.15 56 ER16a ExonRegion 0 38.68 11.97 6.52 4.57 30.28 23.36 7.52 12.24 17.56 13.34 6.06 10.41 4.13 6.05 0.53 0.00 2.11 7.69 1.50 1.84 64.00 170.32 54.31 57 E16a_E17a KnownJunction 0 32.38 2.50 4.76 1.80 41.17 15.67 6.23 7.15 13.28 4.06 2.16 12.60 6.82 7.42 0.00 0.00 4.58 3.73 0.00 3.26 60.11 111.87 54.55 58 ER17a ExonRegion 0 45.40 3.48 8.48 5.44 49.27 32.97 14.61 14.40 18.15 9.91 3.60 9.96 3.74 3.65 2.47 0.00 0.34 5.49 1.78 1.35 21.98 148.76 47.21 59 E17a_E18a KnownJunction 0 73.20 0.00 8.46 2.90 73.43 32.03 10.91 21.93 24.94 12.95 2.68 17.71 0.00 0.00 0.00 0.00 0.00 3.90 0.00 0.00 14.39 191.05 55.06 60 ER18a ExonRegion 0 54.87 0.78 11.03 2.73 64.42 33.29 11.81 16.89 24.42 11.29 1.93 14.32 11.54 1.50 0.45 0.00 0.00 3.70 0.00 1.80 13.22 178.54 53.09 61 ER18b ExonRegion 0 55.28 5.66 7.22 5.24 33.66 46.71 13.22 11.91 28.38 14.18 2.75 14.14 6.05 4.74 3.64 0.00 0.00 3.41 0.00 1.15 6.43 175.07 43.31 62 E18a_E19a KnownJunction 0 39.78 9.08 0.00 8.86 40.41 56.67 12.98 22.43 28.44 20.15 9.05 11.70 0.00 7.36 4.45 0.00 0.00 3.90 0.00 0.00 8.90 206.48 31.41 63 ER19a ExonRegion 0 46.62 2.86 5.17 7.29 53.94 42.70 13.16 19.81 27.23 12.43 4.70 13.97 5.97 2.51 2.55 2.22 0.19 6.64 0.00 1.61 20.33 192.86 62.81 64 E19a_E20a KnownJunction 0 109.80 5.92 7.07 6.73 78.44 23.45 15.81 10.15 22.25 10.66 7.42 0.00 0.00 2.30 8.90 4.36 0.00 0.00 0.00 3.26 41.51 129.33 52.16 65 ER20a ExonRegion 0 57.20 6.88 6.40 5.58 54.57 29.94 9.44 17.24 21.35 12.65 5.06 9.91 2.59 6.77 4.20 2.89 1.95 4.13 0.88 3.61 46.86 165.12 46.06 66 E20_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.29 0.00 0.00 67 E20a_E21a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68 E20a_E22a KnownJunction 0 6.82 0.00 0.00 0.00 0.00 2.90 4.50 1.81 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 0.00 6.30 17.21 7.94 69 E20a_E23a KnownJunction 0 37.34 3.03 2.93 5.49 43.04 2.90 9.85 8.71 9.55 2.95 0.00 6.30 0.00 2.47 0.00 0.00 0.00 4.02 0.00 0.00 14.33 108.63 23.73 70 E20a_E24a KnownJunction 0 3.41 2.30 0.00 1.66 0.00 13.46 1.77 6.98 9.23 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.84 8.45 71 ER20b ExonRegion 0 0.10 0.00 0.61 0.00 1.84 1.58 0.00 0.81 1.77 0.00 0.00 0.42 2.00 0.00 0.00 0.00 0.00 0.32 0.00 0.37 1.94 4.34 0.00 72 ER20c ExonRegion 0 2.42 0.00 0.35 0.19 0.00 1.70 0.00 1.60 1.24 0.00 0.00 5.26 0.34 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 1.49 0.00 73 ER20d ExonRegion 0 1.64 0.00 0.00 0.00 0.00 1.75 0.00 0.00 0.23 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.98 0.00 5.71 1.61 74 E21_Aa NovelBoundary 0 9.56 3.35 0.00 0.00 0.00 2.90 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 0.00 0.00 8.77 0.00 0.00 75 ER21a ExonRegion 0 1.93 0.00 0.00 0.00 1.22 2.51 3.01 0.00 0.84 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.99 4.74 4.01 76 E22_Aa NovelBoundary 0 22.74 7.70 11.38 3.86 6.62 2.21 2.08 2.55 8.25 2.90 6.53 0.00 0.00 0.00 14.71 10.00 10.75 18.12 0.00 5.11 13.65 16.47 14.34 77 ER22a ExonRegion 0 34.79 10.15 3.93 3.03 31.83 11.26 12.54 1.41 1.28 1.32 4.45 5.01 3.86 5.25 1.83 10.01 5.47 7.11 16.32 4.78 5.08 4.43 6.87 78 E22_Da NovelBoundary 0 1292.60 1012.65 485.79 672.58 1397.62 752.81 1880.32 726.27 437.67 528.94 139.14 245.33 242.35 77.70 130.29 613.34 265.36 294.19 464.86 703.86 157.96 313.76 492.63 79 ER22b ExonRegion 0 5.23 6.46 2.74 0.24 19.67 5.29 16.51 0.00 1.24 1.08 4.55 4.07 0.00 3.15 0.00 4.72 3.30 2.72 0.94 6.63 0.52 0.00 0.52 80 I22_AR1 ActiveIntronRegion 0 3.73 0.52 0.87 0.00 3.18 0.94 0.93 1.21 5.99 3.58 0.00 0.00 0.00 0.72 0.00 0.00 0.11 3.36 0.80 0.46 7.88 6.80 2.74 81 E23_Aa NovelBoundary 0 11.11 0.00 0.00 0.00 4.33 2.21 1.63 0.00 1.65 4.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.09 7.90 3.76 82 ER23a ExonRegion 0 66.09 3.49 11.80 5.84 56.61 18.72 12.56 19.24 15.54 8.81 3.40 10.46 5.63 1.71 3.50 0.67 1.12 3.40 2.16 1.59 17.74 158.07 36.79 83 E23_Da NovelBoundary 0 51.64 2.89 6.92 2.96 48.13 17.26 16.21 7.60 7.35 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 2.07 0.00 0.00 0.00 54.68 0.00 84 ER23b ExonRegion 0 7.80 1.39 3.87 1.94 10.98 2.22 7.46 2.73 2.67 0.18 0.00 0.00 3.70 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 23.91 0.00 85 ER24a ExonRegion 0 5.14 3.29 1.14 0.80 4.98 19.91 1.74 1.78 15.62 3.84 0.37 1.18 0.93 0.65 0.83 0.37 0.44 0.67 0.51 1.25 1.82 5.15 2.05