Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DNAJC6 Gene 0 13.08 75.79 41.81 41.14 79.78 451.07 64.12 136.53 267.00 120.10 0.03 13.47 0.11 0.04 0.03 0.04 0.00 123.40 110.90 75.67 0.32 1.97 1.73 2 463018 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.57 0.01 0.00 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.03 0.04 0.00 0.66 0.00 0.88 3 494710 Transcript 0 0.00 3.84 1.52 0.79 2.03 16.03 0.60 7.57 18.41 9.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.24 1.17 2.76 0.00 0.19 0.00 4 395325 Transcript 0 0.00 3.14 0.00 1.15 0.49 18.25 3.23 1.01 10.20 4.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.60 5.98 2.08 1.36 0.00 0.00 5 483402 Transcript 0 0.00 0.00 0.00 0.00 0.00 16.52 0.00 2.01 14.50 3.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 3.67 6 371069 Transcript 0 0.27 5.35 4.16 3.35 5.70 55.72 9.34 16.27 25.77 14.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34.36 29.82 17.28 0.00 0.00 0.00 7 263441 Transcript 0 0.00 1.60 0.61 0.78 0.38 9.30 1.61 3.46 9.70 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.13 5.46 3.50 0.16 0.00 0.00 8 472787 Transcript 0 0.00 0.97 1.42 0.39 3.12 4.62 6.30 6.45 4.11 4.48 0.00 0.69 0.00 0.00 0.00 0.00 0.00 2.39 0.04 7.91 0.00 0.00 0.00 9 498720 Transcript 0 0.02 9.00 1.38 2.55 2.68 16.37 3.47 7.22 15.31 2.85 0.00 0.20 0.00 0.00 0.00 0.00 0.00 7.25 3.75 6.80 0.00 0.02 0.00 10 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.14 0.02 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.07 0.00 1.32 0.00 1.76 11 E1a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER2a ExonRegion 0 0.00 3.31 1.33 0.30 1.75 25.09 1.80 4.63 10.03 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.21 3.52 2.58 0.00 0.57 0.00 13 E2a_E7b KnownJunction 0 0.00 8.22 3.22 2.06 4.33 23.00 0.00 18.07 45.20 23.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29.51 0.00 5.69 0.00 0.00 0.00 14 I2 Intron 0 3.86 23.21 17.26 29.05 12.05 18.06 26.65 13.21 9.77 25.29 0.00 2.13 0.10 0.01 0.00 0.03 0.07 21.11 15.64 13.82 0.15 0.10 0.70 15 I2_AR1 ActiveIntronRegion 0 2.87 14.62 27.66 23.26 12.16 19.65 27.02 18.38 12.82 44.24 0.00 1.62 0.00 0.00 0.00 0.00 0.39 59.33 28.58 23.48 0.65 0.25 1.04 16 I2_SR1 SilentIntronRegion 0 1.50 23.02 9.84 19.36 13.22 15.55 27.43 11.75 8.77 25.69 0.00 3.74 0.00 0.00 0.00 0.12 0.00 14.69 15.44 13.52 0.00 0.16 0.57 17 I2_AR2 ActiveIntronRegion 0 7.26 45.54 29.17 64.11 27.46 39.66 52.67 28.43 18.28 48.00 0.00 4.37 0.00 0.18 0.00 0.00 0.00 17.63 23.07 23.45 0.00 0.00 0.78 18 I2_SR2 SilentIntronRegion 0 4.92 23.34 16.14 31.44 9.25 15.96 22.61 10.11 8.09 15.55 0.00 1.16 0.21 0.00 0.00 0.00 0.00 12.28 10.45 9.37 0.09 0.04 0.66 19 E3_Ab NovelBoundary 0 0.00 30.59 0.00 3.53 4.16 32.48 6.76 2.38 8.25 6.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.32 4.80 0.00 0.00 0.00 0.00 20 ER3a ExonRegion 0 0.00 6.29 0.00 0.87 0.97 36.51 4.21 0.00 2.92 1.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.84 4.05 1.35 0.00 0.00 0.00 21 ER3b ExonRegion 0 0.00 9.47 1.63 3.12 3.19 43.56 9.12 2.36 19.26 8.12 0.00 1.08 0.00 0.00 0.00 0.00 0.00 12.37 12.23 7.18 0.17 0.00 0.63 22 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 16.52 0.00 2.01 14.50 3.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 3.67 23 E3a_E7b KnownJunction 0 0.00 0.00 0.00 1.43 0.00 0.00 2.25 2.01 17.48 6.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 7.91 2.81 2.72 0.00 0.00 24 Ix_AR6 ActiveIntronRegion 0 4.41 4.94 1.27 1.41 13.00 24.18 17.91 7.15 5.11 4.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.96 5.53 4.43 0.00 0.00 0.00 25 ER4a ExonRegion 0 0.55 5.36 4.68 2.90 7.50 56.70 14.26 11.38 18.52 16.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23.45 31.97 11.16 0.00 0.00 0.00 26 E4a_E5a NovelJunction 0 0.00 0.00 0.00 3.00 0.00 25.38 0.00 4.48 7.75 4.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.62 0.00 0.00 0.00 27 E4a_E7b KnownJunction 0 0.00 5.33 3.64 3.80 3.90 54.74 4.42 21.15 33.01 11.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45.27 27.67 23.39 0.00 0.00 0.00 28 ER5a ExonRegion 0 0.96 7.83 2.56 2.75 3.67 61.44 7.84 14.82 43.57 17.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.50 17.42 10.34 0.00 0.00 1.72 29 E5a_E7b KnownJunction 0 0.00 14.21 3.61 4.13 0.00 71.78 13.03 12.40 45.37 19.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.12 20.89 19.30 0.00 0.00 0.00 30 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER7a ExonRegion 0 0.00 3.20 1.23 1.56 0.76 18.60 3.22 6.91 19.41 7.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.25 10.92 6.99 0.31 0.00 0.00 32 ER7b ExonRegion 0 1.71 37.72 12.50 14.89 18.05 243.08 34.45 64.65 226.61 102.55 0.00 2.51 0.00 0.00 0.00 0.00 0.00 154.90 108.96 89.65 1.63 0.84 3.45 33 E7_Da NovelBoundary 0 0.00 43.02 10.70 21.91 23.26 377.45 46.24 85.80 266.87 138.82 0.00 6.30 0.00 0.00 0.00 0.00 0.00 152.92 136.47 85.20 0.00 0.00 4.27 34 E7b_E8a KnownJunction 0 3.41 60.78 14.04 26.00 20.20 391.71 56.75 94.96 297.25 130.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 169.96 112.00 119.65 3.15 0.00 8.71 35 ER7c ExonRegion 0 1.32 49.23 12.30 24.42 22.41 367.07 47.44 99.75 308.52 144.89 0.00 2.53 0.00 0.00 0.00 0.00 0.00 191.86 131.93 102.30 2.20 0.00 8.20 36 ER8a ExonRegion 0 3.64 58.20 13.82 24.15 16.64 334.78 43.88 83.62 310.51 120.22 0.00 15.41 0.00 0.00 0.00 0.00 0.00 178.60 148.37 113.23 0.97 0.00 2.58 37 E8a_E9a KnownJunction 0 6.59 52.69 13.42 21.61 15.62 343.33 42.48 62.76 293.98 114.19 0.00 12.60 0.00 0.00 0.00 0.00 0.00 144.63 153.42 125.02 0.00 0.00 0.00 38 E9_Ab NovelBoundary 0 2.89 33.55 17.36 13.52 18.34 198.92 29.94 67.73 244.64 102.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 108.23 118.12 89.36 0.00 0.00 7.43 39 ER9a ExonRegion 0 3.76 48.47 16.95 20.97 19.62 298.81 31.48 87.77 325.11 126.48 0.00 10.10 0.00 0.00 0.00 0.00 0.00 160.96 148.47 116.90 0.00 0.00 4.40 40 ER9b ExonRegion 0 6.19 61.65 15.84 24.41 30.95 324.10 47.71 96.93 347.30 142.66 0.00 10.27 0.00 0.00 0.00 0.00 0.00 174.71 153.19 129.59 0.00 0.31 1.62 41 E9b_E10a KnownJunction 0 0.00 73.47 21.47 29.97 44.82 374.22 44.07 106.83 349.22 147.10 0.00 19.66 0.00 0.00 0.00 0.00 0.00 206.44 132.71 167.97 0.00 3.12 0.00 42 ER9c ExonRegion 0 0.00 59.99 22.67 25.89 30.77 331.92 45.01 105.44 336.57 133.04 0.00 17.32 0.00 0.00 0.00 0.00 0.00 169.99 109.90 137.23 0.00 2.08 0.00 43 ER10a ExonRegion 0 1.17 52.79 23.99 21.56 55.34 430.41 54.24 93.41 353.35 134.44 0.00 22.91 0.00 0.00 0.00 0.00 0.00 227.26 159.42 122.88 0.00 2.19 2.44 44 E10_Da KnownBoundary 0 0.00 3.35 3.49 0.00 17.23 0.00 16.25 11.67 5.82 2.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.10 0.00 5.62 0.00 0.00 0.00 45 E10a_E11b KnownJunction 0 3.56 46.24 36.25 29.67 54.07 406.64 55.34 90.90 329.45 149.06 0.00 12.15 0.00 0.00 0.00 0.00 0.00 277.28 159.72 137.49 0.00 0.00 0.00 46 ER10b ExonRegion 0 0.00 0.97 1.42 0.39 3.12 4.62 6.30 6.45 4.11 4.48 0.00 0.69 0.00 0.00 0.00 0.00 0.00 2.39 0.04 7.91 0.00 0.00 0.00 47 ER11a ExonRegion 0 0.02 9.00 1.38 2.55 2.68 16.37 3.47 7.22 15.31 2.85 0.00 0.20 0.00 0.00 0.00 0.00 0.00 7.25 3.75 6.80 0.00 0.02 0.00 48 E11_Ab KnownBoundary 0 0.00 6.71 1.54 3.76 3.57 19.93 12.14 23.99 13.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.27 4.80 18.28 0.00 0.00 0.00 49 ER11b ExonRegion 0 8.10 61.92 30.00 26.91 45.21 391.56 59.87 115.59 364.99 134.01 0.00 25.33 0.00 0.00 0.00 0.00 0.00 330.91 216.46 130.62 0.00 3.82 4.53 50 E11a_E12a KnownJunction 0 6.74 102.42 23.95 17.95 42.61 350.65 61.17 130.33 364.29 138.96 0.00 12.60 0.00 0.00 0.00 0.00 0.00 262.52 235.11 169.76 0.00 5.76 0.00 51 ER12a ExonRegion 0 9.27 81.92 22.38 32.97 61.83 596.03 66.71 116.03 355.21 141.66 0.00 31.62 0.00 0.35 0.00 0.78 0.00 257.70 197.05 157.34 0.61 2.37 3.83 52 E12a_E13a KnownJunction 0 2.96 120.11 18.36 47.51 102.12 815.61 102.99 147.62 389.78 174.31 0.00 18.01 0.00 0.00 0.00 0.00 0.00 223.48 235.21 185.30 0.00 5.39 0.00 53 ER13a ExonRegion 0 4.18 64.83 24.82 37.13 69.34 589.63 71.03 164.00 409.70 165.74 0.00 15.48 0.12 0.40 0.00 0.33 0.00 233.83 218.36 174.05 1.98 2.15 0.82 54 E13a_E14a KnownJunction 0 7.04 54.53 35.54 55.80 43.55 558.09 58.69 204.88 443.17 181.96 0.00 18.61 0.00 2.47 0.00 3.76 0.00 244.37 275.02 174.11 2.35 5.39 8.11 55 ER14a ExonRegion 0 7.35 58.20 28.54 46.84 60.83 476.65 57.11 175.49 458.86 182.85 0.00 17.95 2.69 0.31 0.00 1.66 0.00 241.35 271.13 161.89 3.01 3.71 3.45 56 E14b_E15a KnownJunction 0 13.93 96.36 34.00 54.01 86.50 613.51 123.35 164.91 486.40 188.89 0.00 25.96 0.00 0.00 0.00 0.00 0.00 227.25 330.93 207.16 0.00 2.45 4.35 57 ER14b ExonRegion 0 10.94 77.11 29.20 48.84 70.68 512.24 95.21 163.63 473.87 182.45 0.00 17.32 0.00 0.00 0.00 0.00 0.00 235.90 290.66 181.56 0.18 2.78 2.94 58 ER15a ExonRegion 0 9.06 84.94 43.72 46.83 89.54 673.00 82.32 162.02 427.52 177.06 0.00 26.80 1.02 0.56 0.00 0.00 0.00 252.02 269.16 163.00 1.44 2.00 4.83 59 E15a_E16a KnownJunction 0 24.00 114.98 61.38 54.61 84.47 893.75 122.24 159.94 421.90 161.47 0.00 32.56 0.00 2.77 0.00 0.00 0.00 284.87 360.20 183.51 3.09 6.00 8.54 60 ER16a ExonRegion 0 6.61 71.88 50.35 55.88 61.94 502.94 62.85 151.81 364.13 149.03 0.00 33.99 0.00 0.70 0.00 0.00 0.00 272.71 202.17 156.61 0.71 3.19 6.34 61 E16a_E17a KnownJunction 0 9.78 62.23 38.56 43.18 106.20 450.71 68.94 168.16 367.96 170.63 0.00 24.01 0.00 0.00 0.00 0.00 0.00 258.13 177.13 177.88 0.00 6.12 11.35 62 ER17a ExonRegion 0 10.11 65.53 34.43 37.02 53.62 456.34 63.55 132.00 336.02 161.40 0.00 17.21 0.00 0.00 0.00 0.00 0.00 282.28 202.98 133.49 1.41 2.90 2.71 63 E17_Da KnownBoundary 0 3.63 88.21 37.67 41.75 49.41 450.59 55.69 129.96 349.30 141.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 282.34 139.86 103.99 0.00 3.12 0.00 64 E17a_E17b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65 ER17b ExonRegion 0 9.81 67.93 33.61 22.69 32.07 365.62 44.11 84.58 271.25 134.46 0.00 14.32 0.00 0.00 0.00 0.00 0.00 199.78 136.58 90.54 0.50 2.45 2.05 66 E17_Ab KnownBoundary 0 22.67 50.06 22.53 20.08 54.41 307.66 45.62 104.70 240.80 105.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 268.41 125.56 62.26 3.09 2.57 0.00 67 ER17c ExonRegion 0 9.95 53.43 30.66 29.07 32.99 394.78 39.30 120.68 327.02 144.92 0.00 5.55 0.00 0.00 0.00 0.00 0.00 339.22 197.25 92.87 0.30 0.95 0.74 68 E17b_E18a KnownJunction 0 26.08 43.15 23.95 38.32 29.29 416.58 39.88 110.37 316.35 133.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 218.29 106.45 95.30 0.00 0.00 4.18 69 ER18a ExonRegion 0 14.08 65.47 45.05 39.18 36.81 431.80 33.81 157.87 351.33 164.02 0.00 9.94 0.00 0.00 0.00 0.00 0.00 351.84 218.42 103.56 0.00 1.77 0.39 70 E18a_E19a KnownJunction 0 10.52 76.24 28.89 46.75 37.44 533.84 53.97 147.46 358.42 138.47 0.00 11.70 0.00 0.00 0.00 0.00 0.00 254.81 156.33 129.05 0.00 3.06 0.00 71 ER19a ExonRegion 0 3.25 45.09 29.87 45.65 30.36 491.17 43.67 114.10 324.82 157.59 0.00 12.24 0.00 0.00 0.00 0.00 0.00 257.99 135.63 94.82 0.00 2.11 0.72 72 E19a_E20a KnownJunction 0 6.74 44.27 40.30 47.75 43.63 466.95 33.39 105.15 334.23 167.11 0.00 24.01 0.00 0.00 0.00 0.00 0.00 270.03 133.18 73.70 0.00 2.69 4.10 73 ER20a ExonRegion 0 6.79 53.91 38.87 38.46 34.29 435.39 36.31 139.49 358.35 149.00 0.00 10.75 0.00 0.00 0.00 0.00 0.00 386.60 184.22 102.78 0.90 4.77 2.08 74 E20a_E21a KnownJunction 0 22.00 74.20 37.31 40.22 19.86 629.24 38.47 123.84 394.50 215.54 0.00 12.45 0.00 0.00 0.00 0.00 0.00 364.09 246.88 114.67 0.00 5.69 0.00 75 ER21a ExonRegion 0 11.08 54.51 25.02 23.56 31.47 384.77 38.48 90.01 218.28 118.92 0.00 8.33 0.00 0.00 0.00 0.00 0.00 176.31 104.34 79.89 0.02 2.36 2.21 76 E21a_E22a KnownJunction 0 35.86 111.43 26.11 30.13 102.29 610.10 54.85 137.89 309.66 125.47 0.00 13.65 0.00 0.00 0.00 0.00 0.00 217.26 195.49 115.18 0.00 0.00 0.00 77 ER22a ExonRegion 0 12.91 95.51 47.32 42.71 82.65 612.62 73.78 149.49 329.56 155.72 0.00 13.84 0.00 0.00 0.00 0.00 0.00 208.68 157.80 107.01 0.00 1.72 5.20 78 E22a_E23a KnownJunction 0 21.34 116.82 78.62 59.80 81.58 759.68 118.27 211.53 417.91 155.34 0.00 25.81 0.00 0.00 0.00 0.00 0.00 189.15 212.62 125.73 0.00 2.88 7.00 79 ER23a ExonRegion 0 16.17 87.55 54.46 52.74 87.04 561.03 73.18 165.68 354.96 140.47 0.00 36.59 0.00 0.00 0.00 0.00 0.00 211.66 178.47 100.73 0.00 2.19 5.79 80 E23a_E24a KnownJunction 0 14.00 136.23 67.62 64.63 98.30 800.62 93.85 181.34 388.57 146.75 0.00 31.21 0.00 0.00 0.00 0.00 0.00 186.08 206.59 114.67 0.00 0.00 7.68 81 ER24a ExonRegion 0 28.59 145.95 85.34 81.60 175.25 789.82 122.37 258.53 400.89 185.81 0.08 19.93 0.14 0.00 0.09 0.00 0.00 82.91 117.84 83.73 0.19 3.30 1.48 82 E24_Da KnownBoundary 0 0.00 0.00 2.93 1.66 0.00 5.51 8.35 2.46 13.08 4.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.04 2.62 0.00 0.00 0.00 83 ER24b ExonRegion 0 0.36 2.80 1.57 1.27 2.25 2.33 2.00 1.86 8.60 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.40 2.16 4.95 0.00 0.00 0.00