Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 AL110502.3 Gene 0 10.71 8.04 11.49 8.23 11.29 7.66 17.21 13.64 11.72 12.65 6.88 8.24 11.19 12.70 13.90 18.17 14.84 11.60 8.67 10.36 8.13 4.07 11.08 2 421714 Transcript 0 8.85 6.19 6.09 5.11 7.69 5.81 10.19 6.98 6.33 6.34 4.61 6.39 9.42 8.12 9.83 10.71 9.26 7.78 6.30 6.99 4.83 3.15 7.45 3 IG7 Intergenic 0 6.84 3.74 10.38 9.72 12.80 2.62 19.38 11.38 8.88 8.25 5.61 10.41 8.77 9.56 9.48 12.88 14.04 4.13 5.60 8.27 6.85 2.13 5.89 4 IG7_SR1 SilentIntergenicRegion 0 3.73 4.87 6.90 8.41 13.13 5.41 17.65 5.63 5.79 7.28 8.18 21.90 15.23 7.03 10.55 13.61 12.20 3.42 3.82 4.92 7.85 1.04 3.18 5 IG7_AR1 ActiveIntergenicRegion 0 8.10 4.19 12.43 10.59 12.63 1.56 20.40 18.83 10.14 7.32 6.66 7.46 8.89 10.20 10.21 12.62 17.00 5.35 3.55 11.03 5.91 0.76 6.49 6 IG7_SR3 SilentIntergenicRegion 0 7.15 3.29 10.49 9.74 12.83 2.35 19.50 9.92 9.20 8.89 4.57 8.73 7.12 9.98 8.96 12.85 13.37 3.85 6.89 8.05 7.00 2.96 6.35 7 ER1a ExonRegion 0 5.51 3.51 10.78 5.89 6.86 4.44 12.24 12.03 9.68 11.22 4.58 3.33 3.71 8.46 9.07 14.18 10.82 7.63 4.43 6.23 6.10 2.20 6.33 8 E1_Da NovelBoundary 0 15.71 2.43 14.04 22.14 32.85 24.70 27.69 34.05 14.90 32.93 2.42 0.00 0.00 6.95 10.63 31.53 14.12 16.29 4.80 14.00 0.00 3.12 3.59 9 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 Ix Intron 0 9.96 5.82 24.86 14.44 20.99 9.73 19.62 22.11 21.15 25.08 7.76 10.58 13.04 9.96 11.95 20.44 15.23 11.19 8.67 7.17 8.34 3.65 14.10 11 Ix_AR1 ActiveIntronRegion 0 9.01 4.54 34.54 14.77 16.08 6.52 18.83 34.73 21.82 31.66 9.18 14.98 5.39 12.04 14.06 33.75 15.40 15.65 6.93 6.75 9.39 3.53 13.17 12 Ix_SR1 SilentIntronRegion 0 13.26 6.17 21.76 11.12 18.56 10.15 19.92 20.51 23.65 27.87 10.74 12.99 16.68 16.62 16.41 27.71 13.16 12.61 11.33 4.52 13.27 5.44 18.46 13 Ix_AR2 ActiveIntronRegion 0 9.23 6.12 22.94 15.43 23.35 10.62 19.82 18.79 20.21 22.24 6.40 8.49 14.28 7.23 9.91 14.09 15.89 9.40 8.39 8.16 6.46 3.13 13.03 14 I1 Intron 0 3.24 2.21 10.75 4.09 10.79 10.62 13.29 11.76 15.78 13.90 2.82 3.75 4.77 3.77 4.75 6.06 7.27 5.92 2.80 3.89 3.32 2.27 3.74 15 I1_AR1 ActiveIntronRegion 0 1.40 2.86 14.78 3.03 6.72 23.07 15.64 4.59 10.88 7.47 0.16 0.00 5.31 3.13 4.06 2.43 4.14 6.24 1.01 5.60 1.84 2.21 3.15 16 I1_SR1 SilentIntronRegion 0 3.40 2.23 10.80 4.24 11.23 10.27 13.48 12.37 16.38 14.53 3.01 4.02 4.85 3.89 4.84 6.37 7.58 6.04 2.95 3.90 3.46 2.32 3.86 17 E2_Aa NovelBoundary 0 6.37 2.89 32.79 9.36 11.38 7.95 24.20 15.69 26.13 13.67 2.00 0.00 0.00 4.94 4.45 11.88 34.88 13.22 13.84 5.94 8.09 19.78 18.95 18 ER2a ExonRegion 0 3.19 1.23 9.24 3.50 4.00 6.23 2.65 5.83 4.19 4.53 3.75 0.00 2.19 3.90 3.58 5.23 7.41 5.98 1.84 2.45 3.09 2.95 0.83 19 E2_Da NovelBoundary 0 29.34 42.43 197.92 115.10 63.50 104.88 67.30 62.68 89.26 127.19 113.08 34.96 57.46 103.54 153.78 61.27 102.48 121.13 43.58 62.38 71.17 97.48 91.51 20 E2a_E3a KnownJunction 0 5.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 Ix Intron 0 10.99 4.57 10.20 7.21 13.97 7.07 17.72 10.71 8.38 7.73 8.39 7.56 13.44 8.86 10.54 9.56 15.03 6.89 2.80 3.81 7.96 5.95 6.86 22 Ix_SR1 SilentIntronRegion 0 15.23 5.68 14.14 9.31 13.24 6.30 15.67 14.74 10.59 8.60 11.04 4.39 11.47 9.24 14.93 14.29 18.23 10.74 5.34 3.57 8.81 7.93 6.63 23 Ix_AR1 ActiveIntronRegion 0 11.73 3.44 5.04 2.86 14.15 12.56 20.96 4.97 4.95 2.89 5.40 14.35 23.24 4.10 10.95 7.54 10.80 2.47 0.90 4.20 3.25 2.91 7.30 24 Ix Intron 0 44.64 20.49 25.87 28.13 38.75 27.42 34.18 24.73 27.52 29.86 70.59 55.52 78.17 50.68 35.27 46.32 52.48 21.84 8.52 17.42 9.71 13.12 26.81 25 Ix_SR1 SilentIntronRegion 0 45.12 20.73 26.19 28.47 39.23 27.73 34.60 25.04 27.87 30.22 71.46 56.15 79.09 51.27 35.65 46.88 53.13 22.12 8.63 17.60 9.81 13.27 27.14 26 E3_Aa NovelBoundary 0 51.49 55.52 41.34 34.59 59.25 66.50 86.47 27.07 26.22 32.61 71.33 94.98 170.28 101.71 61.31 80.24 43.67 46.51 22.40 23.78 8.77 23.33 40.97 27 ER3a ExonRegion 0 0.00 0.06 0.54 0.09 0.00 0.00 0.41 0.05 0.08 0.22 0.06 0.27 0.00 0.15 5.89 0.00 0.31 0.17 0.00 0.27 0.14 0.00 0.18 28 E3_Da NovelBoundary 0 83.57 22.23 30.16 49.14 65.53 76.55 66.86 31.18 37.85 46.74 96.76 127.09 110.38 68.40 33.99 77.76 72.28 60.65 20.24 23.20 21.62 27.19 66.24 29 Ix Intron 0 19.79 12.89 16.71 21.44 34.57 23.91 33.47 18.48 20.56 20.84 50.33 50.97 65.53 49.02 21.57 34.04 36.36 13.70 9.72 16.08 7.42 15.02 20.83 30 Ix_SR1 SilentIntronRegion 0 11.22 1.02 13.23 7.77 9.90 1.83 3.84 1.73 7.41 3.56 8.89 4.76 12.19 13.16 9.57 7.73 10.56 8.13 7.64 7.02 3.53 16.88 10.57 31 Ix_AR1 ActiveIntronRegion 0 31.76 19.89 26.31 33.46 50.96 37.07 46.83 26.39 30.23 31.45 68.68 59.01 73.24 56.14 25.54 41.43 39.81 18.10 11.44 21.44 10.83 19.31 24.71 32 Ix_AR2 ActiveIntronRegion 0 15.75 5.97 14.15 21.76 27.45 22.66 30.07 20.70 24.82 21.25 55.58 55.62 60.21 65.08 25.23 43.58 49.97 20.37 11.15 18.76 8.08 17.51 29.30 33 Ix_SR3 SilentIntronRegion 0 7.23 9.27 6.03 5.54 18.92 7.93 19.09 6.64 4.72 6.85 22.89 37.88 60.86 28.00 13.76 17.48 21.89 2.80 6.38 7.10 2.48 7.37 9.35 34 Ix Intron 0 9.87 9.91 10.58 17.79 23.81 13.73 26.74 11.29 13.39 10.87 20.21 15.00 46.75 22.24 11.09 21.83 25.41 12.85 11.93 8.57 7.94 9.27 16.80 35 Ix_AR1 ActiveIntronRegion 0 12.56 12.23 16.21 27.16 27.86 17.80 34.12 17.34 19.43 15.63 27.67 17.78 62.26 26.51 12.11 25.74 25.97 17.56 13.61 11.14 8.66 11.72 20.38 36 Ix_SR2 SilentIntronRegion 0 6.50 6.60 3.88 6.40 20.03 8.96 19.17 4.32 6.22 5.37 11.51 12.49 29.66 18.39 9.70 18.30 26.37 7.49 10.99 6.03 7.43 6.81 13.81 37 E4_Aa NovelBoundary 0 5.48 3.35 17.12 28.97 42.28 21.98 26.72 12.53 20.80 17.89 2.05 6.30 25.49 15.54 0.00 32.64 9.35 2.11 9.51 14.83 5.68 8.27 3.93 38 ER4a ExonRegion 0 38.53 32.33 16.00 21.17 35.30 24.20 45.82 23.97 24.05 22.09 19.26 34.74 50.59 36.18 40.45 41.58 36.99 32.92 31.55 32.99 19.63 13.74 37.37