Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TTC4 Gene 0 8.63 5.77 5.26 4.73 8.48 13.00 6.82 7.04 5.54 8.60 10.74 3.44 2.81 8.38 8.02 12.85 11.94 9.05 8.29 3.17 6.37 5.33 11.04 2 371281 Transcript 0 5.36 5.94 4.69 4.87 13.56 17.49 6.89 6.27 5.48 8.03 7.03 2.17 1.38 7.10 8.06 7.75 9.26 6.93 10.87 2.25 6.28 5.21 3.53 3 486621 Transcript 0 8.58 4.66 7.74 9.49 3.45 15.31 2.39 4.75 5.10 7.23 1.48 11.85 9.59 3.02 2.88 7.64 2.90 1.23 3.83 0.32 3.29 9.19 5.49 4 371284 Transcript 0 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 1.03 0.00 0.00 0.00 0.00 0.42 0.61 0.68 0.00 1.31 0.44 0.45 0.43 0.00 5 486091 Transcript 0 5.12 1.32 2.08 3.69 3.82 3.56 3.19 4.63 2.73 3.96 1.69 3.36 2.86 1.35 3.87 2.58 4.15 2.53 4.36 1.94 2.21 1.62 4.24 6 ER1a ExonRegion 0 3.70 4.48 0.61 0.62 15.20 27.01 7.79 0.35 2.84 2.53 10.06 1.87 0.00 9.41 6.00 10.47 12.60 7.98 9.27 1.50 10.52 4.50 5.34 7 E1_Ab KnownBoundary 0 3.78 0.00 0.00 0.00 8.66 36.17 0.00 0.00 1.79 0.00 9.90 0.00 0.00 11.71 4.45 8.72 13.56 0.00 14.40 0.00 0.00 5.94 3.59 8 E1_Ac KnownBoundary 0 6.37 17.83 2.60 2.86 24.79 29.02 11.75 4.15 3.82 5.80 14.27 7.35 0.00 6.77 5.44 16.15 24.31 16.00 12.61 8.31 21.07 13.84 7.34 9 ER1b ExonRegion 0 14.82 14.24 3.68 2.73 40.14 62.35 23.39 3.46 6.18 9.18 30.93 4.33 0.00 27.61 14.51 23.78 33.01 14.78 19.11 6.38 30.85 14.58 23.49 10 ER1c ExonRegion 0 58.34 37.96 30.65 13.65 73.04 101.98 50.45 34.82 30.67 50.04 129.24 17.38 9.19 78.57 57.56 115.11 124.01 80.42 54.15 25.11 76.95 38.39 109.94 11 E1_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E1a_E2a KnownJunction 0 12.97 23.35 23.24 4.43 3.82 11.41 5.70 38.28 35.88 49.75 205.32 18.01 25.81 40.14 20.89 20.34 177.28 10.49 25.51 11.70 120.90 7.41 11.95 13 ER1d ExonRegion 0 0.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.76 2.05 0.00 0.00 0.00 0.00 0.84 1.22 1.36 0.00 2.62 0.88 0.91 0.86 0.00 14 E1b_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER2a ExonRegion 0 5.92 4.76 33.01 16.55 11.11 19.58 5.37 38.89 31.97 54.13 94.50 11.34 11.13 93.24 67.93 122.76 116.34 69.81 51.94 25.28 50.14 48.15 99.82 16 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER3a ExonRegion 0 10.67 24.54 11.26 9.25 34.19 91.42 47.38 12.75 12.03 14.01 11.43 11.52 9.50 12.85 10.87 27.61 10.78 24.15 12.43 7.00 4.61 7.11 28.01 18 E3_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER3b ExonRegion 0 8.58 4.66 7.74 9.49 3.45 15.31 2.39 4.75 5.10 7.23 1.48 11.85 9.59 3.02 2.88 7.64 2.90 1.23 3.83 0.32 3.29 9.19 5.49 21 Ix_AR1 ActiveIntronRegion 0 3.66 8.04 0.00 0.00 8.70 0.00 9.81 0.00 0.00 0.00 0.00 22.43 4.48 2.69 2.44 1.89 2.93 0.00 2.75 3.53 3.26 1.47 0.00 22 ER4a ExonRegion 0 43.36 24.06 0.00 0.00 0.55 13.10 4.29 0.00 0.00 0.03 0.00 1.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER5a ExonRegion 0 19.51 5.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.14 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 Ix Intron 0 2.90 1.34 1.10 2.68 2.35 1.91 4.14 1.84 1.82 2.81 0.64 4.48 4.85 1.47 1.96 2.61 2.54 1.26 2.10 2.45 0.73 8.58 6.45 27 Ix_SR2 SilentIntronRegion 0 3.02 1.55 1.39 3.48 1.27 2.44 5.04 1.96 1.75 3.42 0.37 4.29 5.51 1.66 2.23 2.83 1.57 1.49 3.33 2.43 0.84 10.11 7.26 28 Ix_SR3 SilentIntronRegion 0 4.88 1.16 1.05 1.17 6.17 1.06 1.91 3.71 1.59 2.95 1.11 6.21 2.23 1.54 2.11 4.28 3.80 2.12 0.00 3.07 0.63 9.01 8.44 29 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 2.24 1.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 0.10 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 ER8a ExonRegion 0 0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 34 E8a_E9b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 E9_Aa NovelBoundary 0 38.53 0.00 3.10 3.30 19.86 4.88 6.27 10.43 1.62 3.76 7.11 5.40 0.00 2.18 5.19 8.54 0.00 7.21 20.33 0.00 0.00 2.69 3.67 36 ER9a ExonRegion 0 5.12 1.32 2.08 3.69 3.82 3.56 3.19 4.63 2.73 3.96 1.69 3.36 2.86 1.35 3.87 2.58 4.15 2.53 4.36 1.94 2.21 1.62 4.24 37 E9_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER9b ExonRegion 0 8.65 2.01 4.57 4.95 0.00 0.72 0.65 2.38 1.96 1.66 0.83 3.12 0.00 0.00 0.64 3.26 1.73 0.99 0.00 0.00 0.54 4.42 3.04 39 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER10a ExonRegion 0 4.84 3.13 2.19 3.51 3.56 3.49 2.26 4.18 3.24 5.00 1.84 0.34 0.73 0.98 2.25 3.45 0.91 2.97 3.83 0.28 0.46 1.01 0.50 41 E10_Da KnownBoundary 0 34.38 19.27 28.27 35.69 98.98 33.16 17.58 51.55 29.31 45.05 27.53 7.65 20.62 12.30 29.54 27.43 13.18 31.38 59.01 5.69 7.85 3.12 0.00 42 ER10b ExonRegion 0 7.02 7.40 8.77 9.13 11.93 7.98 5.98 12.19 8.12 13.53 4.01 2.47 2.76 4.79 10.11 5.03 5.91 5.89 12.47 3.00 2.03 5.93 1.71