Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CYB5RL Gene 0 12.33 9.30 11.10 7.88 10.64 17.52 18.82 8.77 8.99 13.18 14.88 16.86 17.33 26.38 16.23 25.26 22.43 25.89 19.09 15.41 12.43 7.40 14.06 2 419823 Transcript 0 0.13 0.44 0.54 0.23 0.58 0.31 0.83 0.56 0.31 0.00 0.33 0.00 0.00 0.29 0.45 4.45 0.54 0.40 1.18 0.00 0.00 0.00 1.28 3 311841 Transcript 0 0.27 0.02 0.04 0.15 0.08 0.09 0.18 0.06 0.10 0.04 0.02 0.00 0.00 0.00 0.03 0.11 0.00 0.05 0.17 0.03 0.00 0.00 0.02 4 287899 Transcript 0 0.00 0.00 0.00 0.00 0.00 10.45 0.00 2.42 1.79 2.85 2.16 0.00 0.00 4.59 0.00 0.00 0.00 0.00 0.00 0.00 6.05 0.00 0.00 5 490863 Transcript 0 12.59 9.39 5.82 5.98 9.32 10.87 15.51 5.82 6.22 6.36 9.38 13.71 15.96 16.44 7.66 16.44 15.67 10.22 9.67 14.30 7.64 4.15 9.51 6 421415 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 497820 Transcript 0 2.85 1.66 7.82 2.14 7.97 4.50 5.90 4.42 1.97 2.52 3.16 2.80 3.16 3.64 5.34 4.34 6.78 11.99 2.62 2.58 2.19 0.00 1.60 8 401046 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 420054 Transcript 0 8.19 8.40 3.17 2.48 5.04 6.74 10.30 4.10 3.66 3.82 4.03 13.30 18.01 11.77 15.13 11.39 9.20 9.80 7.14 10.39 7.07 3.40 9.88 10 493530 Transcript 0 0.71 0.17 1.23 0.45 0.45 0.31 0.66 0.72 0.82 2.10 2.90 2.77 1.43 5.14 4.03 2.56 2.20 5.06 4.43 2.87 1.10 0.87 2.45 11 462299 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER1a ExonRegion 0 1.81 0.10 2.67 0.64 0.17 9.64 2.86 0.89 2.41 0.81 1.59 0.00 0.45 2.23 1.59 2.11 0.21 9.78 2.16 1.37 0.75 2.12 2.27 13 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.16 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.06 0.00 0.00 0.00 0.00 0.00 14 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1_Ad KnownBoundary 0 0.00 0.00 6.12 1.73 0.00 2.27 3.93 3.78 4.69 0.00 2.00 0.00 0.00 11.18 13.60 3.25 0.00 18.20 7.72 5.18 2.47 2.45 3.41 16 ER1b ExonRegion 1 19.05 4.07 14.70 9.54 5.35 51.35 29.13 6.91 6.18 8.03 25.13 0.00 4.69 32.48 26.11 47.55 13.20 64.67 50.97 12.77 13.22 6.25 29.37 17 ER1c ExonRegion 1 19.05 4.07 14.70 10.90 5.35 51.35 33.10 6.91 6.18 9.18 25.13 0.00 4.69 32.48 29.01 53.50 16.50 68.37 57.34 12.77 13.22 6.25 32.30 18 ER1d ExonRegion 1 25.34 4.19 18.20 11.78 17.39 52.10 45.37 10.07 7.56 11.37 43.60 0.13 5.52 55.84 54.19 97.38 42.23 90.38 96.22 18.46 21.32 12.81 44.40 19 E1_Da KnownBoundary 0 3.33 0.00 3.25 2.00 0.00 5.62 6.18 0.00 1.39 0.00 2.21 0.00 0.00 0.00 0.00 3.08 4.11 0.00 4.33 0.00 0.00 0.00 0.00 20 E1a_E2a KnownJunction 1 44.23 5.53 22.91 15.62 39.73 60.42 73.18 15.94 10.45 17.94 73.65 0.00 0.00 71.69 91.97 171.84 83.22 129.33 179.49 31.19 38.49 22.96 62.66 21 ER1e ExonRegion 0 0.25 0.89 1.08 0.45 1.17 0.61 1.66 1.12 0.62 0.00 0.66 0.00 0.00 0.58 0.89 8.89 1.07 0.81 2.37 0.00 0.00 0.00 2.56 22 E1b_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER2a ExonRegion 0 19.05 6.86 17.60 8.39 27.73 19.03 20.12 6.62 10.39 13.97 24.31 18.55 17.85 27.35 43.29 61.23 37.02 76.49 63.02 20.67 15.85 5.66 23.63 24 E2_Ab KnownBoundary 0 138.39 100.51 404.13 459.81 83.62 74.16 152.58 456.91 291.75 356.97 46.70 48.02 71.75 7.59 22.37 113.65 83.22 430.87 62.59 98.05 40.96 54.74 118.06 25 ER2b ExonRegion 1 14.76 4.88 16.91 2.69 10.17 7.81 7.79 9.93 5.61 9.01 32.47 22.76 17.96 7.70 8.79 6.28 30.56 19.69 15.29 10.33 20.27 3.93 6.80 26 E2a_E3b KnownJunction 1 0.00 0.00 22.09 3.96 0.00 5.79 2.25 16.14 9.23 12.71 55.17 0.00 6.82 10.24 4.45 3.76 55.17 24.04 31.81 19.37 25.88 7.90 6.83 27 ER3a ExonRegion 0 0.00 0.00 1.96 0.55 0.00 0.37 0.13 1.21 0.74 1.38 4.83 1.30 0.47 1.14 0.58 0.30 4.95 2.22 1.91 1.49 2.20 1.25 0.59 28 ER3b ExonRegion 0 2.98 0.00 23.88 8.17 10.22 12.70 4.61 9.01 11.08 19.48 26.74 12.56 12.11 46.93 39.17 68.46 39.80 88.50 72.11 26.04 17.20 8.74 30.47 29 E3_Ac KnownBoundary 0 3.63 0.00 41.99 7.89 32.60 45.43 16.34 6.65 14.21 16.95 14.06 11.55 14.12 22.60 37.09 44.43 19.45 73.75 32.94 23.39 19.34 5.45 18.95 30 ER3c ExonRegion 0 2.87 4.77 18.20 5.97 11.69 29.78 23.17 3.87 9.19 19.39 26.79 14.46 6.42 31.94 26.01 25.19 27.32 43.10 23.98 16.28 13.84 5.42 12.88 31 E3a_E4b KnownJunction 0 13.93 0.00 19.31 5.26 0.00 2.61 7.99 6.78 12.59 25.52 33.43 33.76 6.33 66.69 32.88 28.11 20.20 48.42 26.64 10.48 12.85 11.51 19.12 32 E3a_E5b KnownJunction 0 3.33 0.00 0.00 5.36 0.00 4.20 1.81 1.68 1.42 5.96 6.84 13.05 0.00 2.47 0.00 8.54 4.77 14.01 19.11 16.04 5.99 5.08 7.60 33 ER4a ExonRegion 0 2.12 0.51 3.68 1.36 1.34 0.92 1.99 2.16 2.47 6.31 8.70 5.41 1.17 13.81 10.15 6.69 6.60 11.55 5.57 4.26 3.31 2.60 3.67 34 ER4b ExonRegion 0 13.88 4.00 9.93 3.35 10.79 17.19 9.00 15.67 9.65 20.43 30.70 7.85 6.36 49.49 35.26 27.10 31.67 34.73 17.28 11.14 18.19 8.23 12.89 35 E4_Ac KnownBoundary 1 6.59 5.72 9.43 1.53 17.83 28.34 9.10 24.19 6.92 16.65 21.11 6.30 21.91 29.78 41.91 14.78 56.94 20.85 4.80 11.51 20.45 8.39 11.61 36 ER4c ExonRegion 0 3.57 3.15 11.06 6.14 11.82 9.77 6.93 9.94 7.08 12.19 24.43 15.76 5.48 36.84 19.85 26.38 19.43 27.74 15.78 7.58 14.21 10.04 12.24 37 E4_Da KnownBoundary 0 0.00 0.00 5.35 3.66 0.00 0.00 6.36 5.01 1.62 3.63 3.95 7.20 0.00 7.30 4.45 8.29 0.00 17.53 0.00 0.00 0.00 0.00 0.00 38 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 E4a_E5b KnownJunction 0 5.70 0.00 5.74 5.53 4.33 4.88 9.41 2.30 0.00 5.78 21.53 12.00 0.00 29.14 23.24 11.88 12.25 25.08 9.60 8.95 10.69 7.72 10.76 40 E4_Db KnownBoundary 0 0.00 0.00 6.83 0.00 0.00 0.00 4.42 3.74 1.48 3.20 0.00 6.30 0.00 7.24 0.00 4.19 4.68 14.09 9.60 3.26 2.97 0.00 0.00 41 E4b_E5a KnownJunction 0 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 E4b_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.78 7.72 2.94 0.00 0.00 3.67 43 ER4d ExonRegion 0 1.69 0.00 7.60 4.09 1.34 0.37 8.21 7.09 3.58 5.62 2.51 8.66 0.00 11.21 8.99 12.78 6.93 24.94 12.74 4.26 3.31 0.00 3.52 44 ER4e ExonRegion 0 2.85 1.66 7.82 2.14 7.97 4.50 5.90 4.42 1.97 2.52 3.16 2.80 3.16 3.64 5.34 4.34 6.78 11.99 2.62 2.58 2.19 0.00 1.60 45 E4_Dc NovelBoundary 0 3.48 3.16 11.44 8.36 0.00 2.84 14.04 5.96 2.98 3.65 2.68 0.00 13.15 4.30 5.93 8.63 17.48 12.56 4.80 9.27 0.00 0.00 0.00 46 E5_Aa NovelBoundary 1 1511.75 1140.06 420.89 632.69 1116.21 889.60 1415.28 486.89 418.51 458.26 420.32 169.41 269.63 188.53 386.43 1413.05 672.56 710.76 1361.83 1075.47 549.76 519.32 1138.91 47 ER5a ExonRegion 0 5.69 2.01 8.52 2.96 8.44 8.88 6.32 6.75 0.81 1.11 3.95 10.64 13.39 7.31 10.03 1.07 1.17 9.83 5.18 4.23 3.26 1.58 6.51 48 E5_Ab KnownBoundary 0 14.22 5.99 3.64 4.13 3.48 20.73 25.92 9.20 3.39 5.80 2.68 6.30 13.31 0.00 0.00 3.42 9.35 14.55 9.51 8.12 2.35 0.00 3.41 49 ER5b ExonRegion 0 13.40 5.03 11.55 9.73 10.92 22.64 24.67 11.26 15.66 26.27 29.62 21.35 20.49 53.63 45.99 38.98 48.03 47.60 33.10 21.77 20.97 14.23 13.20 50 E5_Da NovelBoundary 1 7.11 0.00 2.75 8.09 7.72 10.68 8.61 9.16 1.79 2.71 2.68 5.40 45.94 7.00 0.00 11.02 4.77 4.15 13.18 5.56 5.50 5.76 3.59 51 E5a_E6a KnownJunction 0 0.00 0.00 11.27 0.00 0.00 7.21 2.25 2.55 3.30 3.33 9.32 12.15 6.82 21.72 15.08 3.50 4.68 2.32 0.00 0.00 0.00 3.12 0.00 52 E5a_E6b KnownJunction 0 0.00 0.00 1.54 1.93 17.32 11.87 21.37 2.09 13.57 32.50 11.90 6.30 0.00 26.66 29.30 43.41 36.09 46.43 8.38 18.02 21.07 6.12 8.71 53 ER6a ExonRegion 1 3.73 2.49 5.33 2.28 8.96 2.80 6.36 1.74 2.73 5.79 4.69 17.24 36.28 17.42 10.84 13.23 12.21 6.36 7.39 3.91 0.00 4.40 2.96 54 E6_Da KnownBoundary 1 7.11 3.35 7.69 5.76 8.66 13.00 12.54 0.00 6.71 7.06 9.21 38.26 33.11 18.84 26.70 15.64 9.54 4.31 9.13 2.56 0.00 3.06 0.00 55 E6a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.16 0.00 2.11 0.00 0.00 0.00 0.00 0.00 56 E6_Db KnownBoundary 0 0.00 0.00 0.00 3.60 3.74 11.36 12.45 0.00 1.53 2.53 15.00 36.76 36.04 22.96 4.45 16.83 9.44 4.31 4.61 6.39 0.00 8.88 3.76 57 ER6b ExonRegion 1 4.01 1.45 4.46 4.72 6.02 13.95 11.49 0.00 5.47 5.57 13.81 37.11 36.18 19.14 13.57 18.89 11.55 5.81 7.74 3.95 0.00 6.32 2.94 58 ER6c ExonRegion 0 22.37 18.79 11.64 11.96 18.64 21.74 31.02 11.63 12.43 12.72 18.75 27.41 31.92 30.58 15.32 32.87 31.35 20.44 19.34 28.60 15.27 8.30 19.01 59 E6_Ab KnownBoundary 0 17.48 0.00 0.00 3.43 3.57 0.00 12.54 10.43 0.00 0.00 4.32 18.16 6.17 12.71 0.00 11.36 31.51 2.11 4.33 8.95 7.78 0.00 4.18 60 ER6d ExonRegion 0 12.03 3.34 9.03 10.41 6.10 31.14 20.74 12.37 13.06 28.26 21.88 12.20 15.24 43.34 21.76 36.81 40.82 49.43 28.42 17.37 24.47 14.30 15.36 61 E6_Dc NovelBoundary 0 3.78 2.83 6.30 1.43 7.98 14.48 1.94 4.15 1.22 2.71 0.00 6.30 0.00 7.59 10.51 0.00 8.04 3.65 0.00 0.00 3.15 0.00 0.00 62 E6c_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.42 0.00 0.00 0.00 0.00 6.82 7.42 4.45 0.00 4.77 7.05 0.00 0.00 0.00 0.00 0.00 63 E6c_E8a KnownJunction 0 30.01 18.15 19.75 14.38 7.98 10.11 11.61 19.84 8.36 23.96 12.32 6.30 21.10 55.51 4.45 26.66 29.73 74.41 21.55 17.51 16.56 20.70 18.78 64 E6c_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 10.45 0.00 2.42 1.79 2.85 2.16 0.00 0.00 4.59 0.00 0.00 0.00 0.00 0.00 0.00 6.05 0.00 0.00 65 E6c_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 E7_Aa NovelBoundary 0 122.10 75.71 79.74 61.80 115.03 31.00 139.33 97.02 99.54 73.63 34.75 38.41 54.70 19.60 42.40 88.27 37.59 70.43 92.43 78.04 33.05 31.54 47.29 67 ER7a ExonRegion 1 32.76 33.59 12.67 9.93 20.15 23.93 41.22 13.97 14.64 15.28 16.12 53.18 65.23 39.68 56.05 42.42 32.02 30.04 28.55 41.55 28.26 13.58 39.52 68 E7_Da NovelBoundary 0 0.00 0.00 3.96 0.00 3.99 0.00 6.09 1.73 1.77 2.23 6.95 5.85 0.00 7.06 0.00 15.81 9.16 7.50 4.42 5.62 2.59 2.57 7.85 69 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 3.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 70 E8_Aa NovelBoundary 0 14.82 0.00 5.14 3.60 8.23 6.98 6.58 5.09 4.98 0.00 0.00 0.00 0.00 20.19 4.45 7.78 17.30 12.77 4.80 2.75 7.91 2.39 0.00 71 ER8a ExonRegion 0 13.39 6.28 16.34 10.98 9.54 20.83 20.23 14.87 11.87 17.61 17.03 12.16 15.84 54.07 16.53 39.77 43.83 53.68 30.43 17.73 17.49 13.72 16.61 72 E8a_E9a KnownJunction 0 12.89 3.29 11.68 7.46 0.00 24.82 23.58 15.16 10.82 16.25 10.16 0.00 13.15 40.67 14.71 17.35 12.25 42.03 4.42 12.78 12.60 8.02 16.65 73 ER8b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.89 3.13 1.62 1.93 0.99 0.00 1.85 0.00 1.42 0.00 0.00 0.00 74 I8_AR1 ActiveIntronRegion 0 2.63 1.13 3.80 2.42 0.88 5.12 4.70 2.02 3.69 3.68 5.15 2.96 4.97 9.52 8.82 11.23 10.97 9.06 5.25 3.45 3.24 1.43 3.65 75 ER9a ExonRegion 0 11.27 5.21 9.06 9.64 7.34 22.33 14.99 7.09 10.77 18.26 24.37 8.10 7.57 43.37 17.29 27.38 34.53 46.98 32.44 12.53 23.08 6.91 16.13 76 E9_Da KnownBoundary 0 16.52 3.03 7.84 6.16 11.54 24.93 31.93 14.70 11.46 21.57 21.58 17.41 5.84 57.98 25.71 15.72 42.08 39.55 20.42 11.51 19.21 0.00 23.73 77 ER9b ExonRegion 0 14.29 10.84 19.14 11.15 12.07 27.63 25.08 13.80 13.27 23.70 20.22 22.55 18.52 37.90 22.21 34.43 28.10 39.65 26.35 16.30 17.06 12.56 19.16 78 E9_Db NovelBoundary 0 41.56 31.38 47.81 39.56 36.67 61.44 66.91 50.36 32.15 35.73 13.32 13.05 8.12 7.24 0.00 37.68 3.83 48.29 17.60 35.99 28.97 23.33 20.74 79 E9_Dd NovelBoundary 0 13.04 5.92 5.29 3.26 11.97 12.66 16.47 1.52 5.44 3.81 7.26 0.00 6.66 7.06 0.00 19.99 13.18 2.40 0.00 0.00 7.60 2.51 3.84 80 ER9c ExonRegion 0 10.58 2.03 4.90 0.00 0.00 29.34 15.89 1.73 0.00 5.73 5.80 8.66 4.69 10.56 11.61 17.83 6.60 3.70 0.00 10.64 6.61 4.17 5.87 81 ER9d ExonRegion 0 1.59 1.63 0.06 0.00 0.00 12.19 9.40 0.69 0.00 2.75 2.22 3.68 4.22 5.77 5.80 4.90 0.17 0.83 0.00 4.26 5.40 2.40 2.20 82 I9_AR1 ActiveIntronRegion 0 10.80 5.83 15.13 9.43 7.55 26.80 14.95 11.73 11.73 19.30 14.17 11.94 10.83 21.88 18.27 27.61 16.68 30.45 19.58 10.56 13.05 7.87 14.71 83 ER10a ExonRegion 0 0.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 84 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85 ER11a ExonRegion 0 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 86 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 87 ER12a ExonRegion 0 0.91 0.15 0.26 0.87 0.48 0.53 1.09 0.37 0.59 0.25 0.14 0.00 0.00 0.00 0.17 0.64 0.00 0.30 1.03 0.15 0.00 0.00 0.11