Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PODN Gene 0 44.29 1.61 13.75 8.06 4.92 18.41 4.81 16.47 9.25 8.61 0.10 0.73 0.74 0.42 0.56 0.48 0.46 0.84 0.44 0.59 125.11 43.33 40.88 2 416580 Transcript 0 3.33 0.00 2.63 4.40 0.00 2.56 0.00 3.61 0.00 8.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48.19 10.04 11.44 3 395871 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 371500 Transcript 0 1.07 0.11 0.20 0.00 0.29 1.47 0.69 0.41 0.80 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.17 0.00 5.85 3.00 3.85 5 312553 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 471210 Transcript 0 4.74 1.05 1.67 2.28 0.96 0.70 1.66 1.06 0.51 0.43 0.20 1.11 1.44 0.80 1.09 0.92 0.89 0.44 0.74 1.04 5.77 5.87 7.71 7 471285 Transcript 0 1.73 0.00 2.11 1.81 0.04 0.43 0.55 0.94 0.17 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.03 7.89 4.22 1.92 8 490650 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1a ExonRegion 0 6.88 0.00 0.00 0.00 0.00 1.03 0.00 0.65 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.13 5.60 5.41 10 ER1b ExonRegion 0 83.59 0.00 0.99 0.00 1.44 21.56 3.55 10.03 4.45 3.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.48 0.00 0.00 138.11 19.94 51.50 11 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E1a_E4a KnownJunction 0 2.96 0.00 3.22 0.00 0.00 4.26 0.00 2.34 0.00 2.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36.63 10.72 10.67 13 ER2a ExonRegion 0 3.41 0.55 0.98 0.00 1.44 1.97 1.07 2.07 1.48 3.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 0.00 24.16 4.90 12.63 14 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.94 0.00 15 I2 Intron 0 4.61 0.27 0.72 1.21 0.26 1.57 1.01 0.51 0.67 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.14 22.47 9.15 10.47 16 I2_SR1 SilentIntronRegion 0 4.62 0.27 0.72 1.21 0.27 1.58 1.01 0.51 0.67 1.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.14 22.50 9.16 10.48 17 ER3a ExonRegion 0 1.93 0.00 0.00 0.00 0.00 2.98 2.36 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.48 4.69 3.15 18 E3_Da NovelBoundary 0 2.96 0.00 0.00 1.47 0.00 7.89 1.99 0.00 1.53 3.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.52 19.96 8.02 19 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.59 2.45 3.50 20 E4_Aa NovelBoundary 0 6.45 0.00 1.83 3.30 0.00 0.00 2.25 0.00 0.00 0.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.05 0.00 16.22 21 ER4a ExonRegion 0 7.19 1.05 2.81 1.93 0.00 8.60 4.79 9.37 0.84 5.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 107.27 19.75 16.57 22 E4_Da KnownBoundary 0 11.04 2.63 1.80 4.96 0.00 8.46 3.27 10.64 2.95 10.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 133.19 29.64 19.63 23 E4a_E11b KnownJunction 0 3.33 0.00 2.63 4.40 0.00 2.56 0.00 3.61 0.00 8.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48.19 10.04 11.44 24 ER4b ExonRegion 0 16.13 1.15 10.25 5.12 2.45 16.09 3.02 15.36 8.99 12.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 127.55 35.72 36.13 25 E4b_E5b KnownJunction 0 123.28 0.00 18.78 14.12 7.39 2.90 5.83 32.98 24.19 20.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 254.40 90.50 98.68 26 E4b_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER5a ExonRegion 0 1.87 0.00 1.07 0.35 0.24 0.16 0.51 1.09 0.03 0.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.22 0.26 0.35 4.34 0.98 3.46 28 E5_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 3.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.31 0.00 0.00 29 ER5b ExonRegion 0 61.06 1.33 30.56 11.78 6.50 16.78 5.75 32.15 22.94 18.19 0.00 0.00 0.00 0.00 0.03 0.00 0.04 0.00 0.00 0.00 233.38 70.46 63.00 30 E5a_E6a KnownJunction 0 0.00 0.00 1.83 3.33 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.09 5.14 7.17 31 E5a_E7a KnownJunction 0 107.57 2.70 46.57 14.55 6.54 24.25 2.25 26.08 18.69 12.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 287.64 93.93 58.56 32 ER6a ExonRegion 0 12.34 3.15 2.09 3.17 2.65 1.93 2.72 2.08 1.48 1.26 0.60 3.33 4.31 2.41 3.27 2.77 2.66 1.08 1.97 2.77 9.88 11.49 12.49 33 ER7a ExonRegion 0 63.66 2.88 35.06 12.58 2.76 30.02 2.30 31.78 24.85 13.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 289.64 98.66 70.34 34 E7a_E8a KnownJunction 0 80.68 0.00 34.68 13.72 8.40 48.04 3.93 41.20 34.14 22.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 257.49 90.20 80.50 35 E7a_E9a NovelJunction 0 0.00 0.00 2.93 0.00 0.00 2.90 6.23 0.00 0.00 5.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.53 9.92 6.91 36 ER8a ExonRegion 0 41.96 0.33 30.71 13.03 6.20 37.41 5.44 34.82 19.18 19.16 0.00 1.53 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.00 264.04 73.40 74.91 37 E8a_E9a KnownJunction 0 81.57 2.96 25.90 15.22 7.30 61.61 8.52 22.96 13.89 22.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 269.72 71.83 56.68 38 ER9a ExonRegion 0 49.21 3.90 23.14 13.45 9.49 38.04 5.18 25.60 12.30 18.33 0.00 0.39 0.00 0.00 0.00 0.00 0.00 1.74 0.00 0.00 237.30 61.83 57.80 39 E9a_E10a KnownJunction 0 69.35 12.50 24.25 14.28 11.88 52.87 2.25 32.33 14.84 17.22 0.00 6.30 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 198.98 74.40 65.30 40 ER10a ExonRegion 0 66.03 5.80 32.60 14.37 7.06 35.28 6.05 38.29 15.16 22.70 0.00 2.72 0.00 0.00 0.00 0.00 0.00 1.78 0.00 0.00 255.84 97.58 69.67 41 E10a_E11a KnownJunction 0 52.68 8.95 37.08 12.02 4.33 47.59 7.77 31.83 10.50 11.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 233.64 114.08 79.47 42 ER11a ExonRegion 0 29.27 0.35 30.15 15.55 7.15 41.60 2.91 34.61 13.62 14.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 221.94 66.78 51.24 43 E11_Ab KnownBoundary 0 28.75 0.00 40.12 26.14 8.23 61.73 0.00 59.27 22.37 23.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 229.38 68.64 66.75 44 ER11b ExonRegion 0 43.49 0.61 33.14 20.33 5.60 30.92 5.28 30.60 21.37 15.44 0.00 1.06 0.00 0.00 0.00 0.00 0.00 1.37 0.00 0.00 251.36 101.59 68.88 45 E11_Ac KnownBoundary 0 48.08 0.00 26.61 15.92 3.74 21.07 3.97 14.83 16.84 8.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 219.00 55.97 39.01 46 ER11c ExonRegion 0 40.11 2.09 22.81 19.99 7.27 23.28 2.51 23.18 13.87 11.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 201.44 54.55 46.46 47 E11_Ad KnownBoundary 0 70.01 8.55 15.76 22.47 11.46 29.76 0.00 32.16 12.64 12.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 181.25 52.35 59.07 48 ER11d ExonRegion 0 47.47 1.45 18.83 9.59 4.51 25.73 5.74 20.17 15.44 11.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.58 182.03 56.49 42.98 49 E11a_E12a KnownJunction 0 0.00 0.00 1.15 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.30 3.06 0.00 50 E11a_E12b KnownJunction 0 75.57 0.00 27.65 6.79 3.74 39.98 8.26 21.40 16.93 11.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.56 0.00 0.00 222.46 21.37 44.30 51 E11a_E12c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 ER12a ExonRegion 0 3.47 0.00 3.06 1.55 0.07 0.87 1.10 1.87 0.34 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 0.00 0.06 9.49 5.38 3.83 53 E12_Ab KnownBoundary 0 3.19 0.00 3.67 0.00 0.00 0.00 2.25 2.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 6.25 3.41 54 ER12b ExonRegion 0 100.70 0.50 29.39 8.84 7.51 23.42 9.59 30.49 11.86 6.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.17 0.00 1.36 225.54 59.91 60.35 55 E12_Ac KnownBoundary 0 154.18 3.22 28.92 6.83 11.12 50.99 10.29 43.46 17.68 10.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 290.97 57.99 48.66 56 ER12c ExonRegion 0 156.02 1.34 19.08 6.81 8.03 31.54 9.78 24.12 15.47 12.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.05 0.00 0.00 263.41 70.81 71.57 57 E12a_E13a KnownJunction 0 223.00 2.96 14.69 9.72 14.77 72.17 16.78 18.07 4.77 16.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 242.04 64.66 72.13 58 ER13a ExonRegion 0 115.16 2.43 22.56 11.99 17.49 46.63 8.16 24.70 15.98 14.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.02 0.00 0.00 250.29 66.95 82.74 59 E13_Da KnownBoundary 0 88.24 0.00 13.99 6.93 3.90 56.16 1.77 31.91 13.54 8.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 0.00 0.00 238.09 42.68 89.38 60 ER13b ExonRegion 0 99.77 1.15 8.10 6.19 9.68 36.03 8.24 20.63 13.31 11.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 0.00 0.00 215.05 84.07 115.65 61 E13_Db NovelBoundary 0 70.90 0.00 5.50 5.39 11.97 16.75 4.02 0.00 1.45 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.54 8.14 11.61 62 E13b_E14a KnownJunction 0 309.83 0.00 21.05 20.18 24.87 83.76 16.78 57.42 31.94 30.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 241.06 140.90 118.31 63 Ix Intron 0 12.30 0.44 4.30 3.26 1.62 3.34 1.42 2.85 1.64 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.11 0.15 29.63 8.03 14.25 64 Ix_AR1 ActiveIntronRegion 0 16.65 0.57 3.34 5.71 2.26 3.86 1.12 1.45 2.33 2.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 29.71 9.66 15.27 65 Ix_SR1 SilentIntronRegion 0 11.93 0.00 5.66 3.15 3.02 2.58 1.68 2.54 1.05 2.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.78 0.00 0.00 24.96 5.87 12.83 66 Ix_AR4 ActiveIntronRegion 0 9.72 0.44 3.22 2.42 0.87 3.37 1.23 3.97 1.85 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 0.00 0.46 32.19 8.84 13.58 67 Ix_SR2 SilentIntronRegion 0 11.43 0.89 5.90 1.33 0.00 3.64 1.88 3.27 1.07 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.45 0.00 0.00 31.84 7.25 16.30 68 E14_Aa NovelBoundary 0 13.56 0.00 7.48 9.66 0.00 0.00 0.00 4.85 2.81 3.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.10 2.69 17.07 69 ER14a ExonRegion 0 86.66 1.68 21.13 14.85 8.84 29.14 9.24 27.44 14.00 12.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 0.00 166.81 69.28 64.51 70 ER14b ExonRegion 0 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00