Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 UQCRH Gene 0 249.00 212.36 651.18 333.77 466.29 618.75 289.75 286.33 230.75 684.95 947.64 197.93 74.98 502.54 679.23 433.96 827.51 254.81 326.07 213.33 480.07 322.03 280.71 2 311672 Transcript 1 49.05 51.88 586.55 190.92 154.93 195.73 133.58 238.80 207.08 810.91 1317.57 122.83 37.00 322.46 407.89 182.84 1242.72 117.72 152.32 192.54 786.96 134.36 84.06 3 430609 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 489056 Transcript 0 0.00 0.00 15.76 2.06 0.00 0.00 0.00 1.56 5.58 7.44 13.06 0.00 0.00 2.47 4.45 0.00 17.77 0.00 3.67 0.00 5.56 2.76 0.00 5 486951 Transcript 0 35.63 19.05 30.60 14.65 32.87 22.24 31.27 28.14 15.13 34.69 33.90 51.52 31.49 40.73 50.80 39.23 48.57 20.64 19.12 16.00 19.40 13.41 18.96 6 496387 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 460947 Transcript 0 87.73 39.68 63.51 28.47 26.97 27.34 29.90 30.55 22.09 53.75 59.78 38.77 22.48 48.84 60.43 41.48 65.66 19.21 13.43 19.63 35.14 17.87 30.40 8 ER1a ExonRegion 0 94.68 63.70 65.90 22.39 195.60 265.74 216.20 20.94 18.67 80.35 178.14 2.74 0.62 177.20 198.57 151.71 170.53 66.44 95.70 47.34 40.48 48.53 58.78 9 E1_Ab KnownBoundary 0 102.68 73.28 12.33 3.40 152.80 211.36 205.36 2.55 5.32 10.83 165.36 0.00 0.00 85.11 205.45 149.36 148.39 20.10 94.21 34.71 33.36 41.52 62.32 10 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.54 0.00 0.00 0.00 0.00 0.00 11 E1_Ad KnownBoundary 1 261.90 180.17 304.04 122.33 942.02 1113.51 876.94 124.21 87.18 290.94 471.28 6.30 0.00 153.81 123.37 360.50 519.77 249.01 283.21 180.37 221.84 138.57 169.79 12 ER1b ExonRegion 1 460.93 312.49 319.41 114.94 1110.73 1531.43 1135.37 114.65 93.59 335.53 900.09 7.22 4.69 1044.13 968.70 698.45 919.12 310.42 477.45 249.17 308.52 253.73 291.71 13 ER1c ExonRegion 1 642.36 442.30 455.84 160.82 1522.50 2256.49 1476.88 166.80 142.04 435.82 1343.36 17.32 4.69 1737.81 1478.19 912.44 1422.69 420.36 598.85 351.06 588.39 408.37 417.00 14 ER1d ExonRegion 1 1323.85 1060.25 1944.96 1066.89 2478.90 3209.78 1386.52 794.40 693.22 1893.13 3429.40 99.11 71.41 1701.87 2253.88 1791.79 3755.50 1127.46 1265.39 804.58 2089.63 956.73 1288.23 15 E1a_E2a KnownJunction 1 123.06 64.59 545.43 262.40 74.36 84.61 41.47 294.05 280.26 692.23 537.56 207.97 12.50 195.72 332.78 211.14 560.54 195.99 262.22 122.34 262.99 141.76 114.05 16 E1a_E3c NovelJunction 0 0.00 0.00 43.85 3.13 4.16 2.38 2.03 10.31 7.41 16.90 14.42 0.00 6.49 2.30 4.45 3.85 8.79 4.68 4.14 4.99 0.00 2.39 0.00 17 I1 Intron 0 13.16 8.31 21.18 12.63 15.96 12.76 22.65 9.81 8.08 14.41 19.72 41.89 20.54 19.60 21.04 21.96 30.08 9.94 8.97 7.72 6.49 7.09 9.39 18 I1_SR1 SilentIntronRegion 0 16.13 9.39 20.87 14.43 18.82 12.97 26.44 10.85 9.51 15.22 19.76 46.97 24.32 18.70 22.66 21.67 27.69 8.69 9.22 8.57 4.76 8.40 9.47 19 I1_AR2 ActiveIntronRegion 1 6.82 5.46 14.70 4.36 12.93 18.70 20.58 1.38 3.95 9.18 10.34 65.90 27.40 20.67 10.08 9.57 17.72 7.90 1.71 8.00 2.37 4.47 3.15 20 E2_Aa NovelBoundary 1 13.93 20.59 25.22 23.44 48.56 21.12 41.42 14.17 7.38 20.58 12.53 69.77 67.53 22.84 42.28 7.78 9.16 4.52 0.00 8.95 5.93 6.00 7.51 21 E2a_E3a KnownJunction 1 10.37 28.48 134.32 76.71 8.32 33.33 16.65 39.68 37.35 55.93 221.64 12.60 32.63 33.85 62.80 21.02 181.11 16.83 70.59 30.23 102.74 25.04 30.82 22 E2a_E3c KnownJunction 1 3.41 40.06 1107.21 359.46 114.26 125.72 50.96 456.66 395.48 1541.47 2456.99 242.93 73.37 467.72 617.22 213.96 2314.91 169.01 208.95 337.74 1533.44 220.20 109.35 23 ER2a ExonRegion 1 60.12 52.12 1088.08 403.72 84.93 115.12 47.22 466.55 436.86 1399.56 1686.92 241.65 78.86 345.64 434.11 210.25 1659.49 258.07 247.16 239.32 1020.89 196.08 128.45 24 E2_Db KnownBoundary 1 0.00 6.45 63.42 28.50 23.43 0.00 9.36 35.69 15.45 52.38 39.01 135.04 66.39 45.68 61.07 25.38 46.19 11.77 7.72 9.14 9.02 18.31 41.49 25 E2b_E3c KnownJunction 0 0.00 0.00 15.76 2.06 0.00 0.00 0.00 1.56 5.58 7.44 13.06 0.00 0.00 2.47 4.45 0.00 17.77 0.00 3.67 0.00 5.56 2.76 0.00 26 ER2b ExonRegion 1 0.79 6.23 53.15 21.30 15.39 0.00 6.12 27.12 17.52 49.68 42.40 109.59 57.75 32.38 34.63 18.39 51.99 9.93 13.34 7.31 12.26 15.89 30.47 27 ER2c ExonRegion 1 35.63 19.05 30.60 14.65 32.87 22.24 31.27 28.14 15.13 34.69 33.90 51.52 31.49 40.73 50.80 39.23 48.57 20.64 19.12 16.00 19.40 13.41 18.96 28 I2 Intron 0 59.97 26.55 20.70 12.01 19.78 19.43 17.29 11.42 14.51 20.21 43.34 46.12 12.57 35.73 32.12 30.02 37.41 15.39 8.63 4.19 8.69 12.32 13.75 29 I2_AR1 ActiveIntronRegion 0 60.26 26.68 20.80 12.07 19.87 19.52 17.37 11.48 14.58 20.31 43.55 46.32 12.64 35.90 32.27 30.17 37.59 15.46 8.67 4.21 8.73 12.38 13.81 30 E3_Ab NovelBoundary 0 53.42 44.99 235.27 186.09 106.11 47.98 50.83 66.17 85.85 119.67 532.71 109.24 53.08 121.43 151.55 115.70 314.91 53.56 86.31 109.11 243.34 67.30 85.02 31 ER3a ExonRegion 1 25.82 30.50 169.84 125.17 50.41 41.15 24.68 50.26 59.24 81.80 415.88 45.03 35.83 79.91 101.89 53.85 266.71 47.15 87.41 63.06 186.17 45.92 58.38 32 ER3b ExonRegion 1 63.31 55.07 229.18 154.40 119.71 165.65 103.00 85.48 80.62 112.40 266.69 79.55 38.17 118.06 172.87 114.78 135.71 78.00 119.00 71.37 118.39 94.64 113.67 33 E3_Da KnownBoundary 0 59.71 32.95 42.58 17.91 31.15 5.28 11.48 20.00 23.09 42.42 26.69 25.21 12.82 43.20 34.12 20.25 37.68 13.89 3.76 23.65 17.79 11.08 11.35 34 E3a_E3c KnownJunction 0 19.63 90.05 185.24 113.27 300.25 677.28 328.57 68.59 42.42 57.14 154.46 80.28 46.26 74.87 71.95 37.68 94.53 26.28 108.33 23.97 74.13 56.03 69.40 35 ER3c ExonRegion 0 87.73 39.68 63.51 28.47 26.97 27.34 29.90 30.55 22.09 53.75 59.78 38.77 22.48 48.84 60.43 41.48 65.66 19.21 13.43 19.63 35.14 17.87 30.40 36 E3_Ac KnownBoundary 0 93.57 52.95 50.00 21.04 32.77 25.78 31.58 35.28 13.31 61.27 44.12 18.91 26.30 44.97 53.90 46.74 33.01 12.93 4.61 16.87 14.21 10.90 21.51 37 ER3d ExonRegion 0 103.58 252.98 2287.49 1176.14 581.62 637.07 228.80 1010.67 796.05 2488.10 3115.04 552.05 143.61 1934.47 2531.39 1626.44 3019.93 969.71 1188.67 754.83 1824.85 975.55 1078.57 38 E3b_E4a KnownJunction 0 174.03 253.18 2155.99 1105.69 2758.58 3199.75 1112.37 928.36 655.52 2103.37 1769.82 757.75 204.86 733.54 1410.47 954.96 1017.20 634.73 602.18 420.06 800.82 521.40 523.19 39 I3_AR1 ActiveIntronRegion 0 29.18 9.80 36.39 20.92 25.34 11.58 16.05 23.96 17.43 37.19 19.59 69.51 19.11 11.51 28.48 15.80 31.80 6.11 4.23 8.13 5.49 5.54 10.24 40 E4_Aa NovelBoundary 0 20.89 3.35 38.17 14.55 36.33 9.94 8.92 14.95 7.61 40.53 15.53 78.93 36.52 12.77 43.76 19.99 29.27 12.27 4.24 13.49 11.00 11.02 11.52 41 ER4a ExonRegion 1 612.32 490.80 1074.07 517.69 1001.62 1515.94 697.21 478.99 375.73 1195.91 1418.63 574.88 209.89 580.26 916.55 382.69 618.23 172.78 359.96 251.11 370.73 704.08 172.57 42 ER4b ExonRegion 0 160.15 19.66 14.30 21.35 30.33 34.84 10.59 9.22 8.65 14.15 76.03 31.75 3.13 35.73 84.14 20.80 24.21 8.01 9.56 8.51 8.08 6.95 5.87