Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PPIH Gene 0 136.30 60.96 148.19 65.26 78.66 73.22 66.84 70.53 45.17 119.47 260.78 118.59 45.02 174.99 228.42 230.93 178.40 46.06 38.00 42.04 53.53 49.43 36.04 2 458498 Transcript 0 15.33 4.27 0.75 0.56 9.83 10.70 3.22 4.27 2.62 0.44 18.82 0.00 0.00 11.67 29.07 33.06 21.96 0.00 0.00 0.00 3.15 0.00 0.00 3 304979 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 372550 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 440068 Transcript 0 0.52 0.50 0.66 0.75 0.00 1.12 0.16 2.77 2.19 1.46 0.95 0.00 0.00 0.00 1.05 0.73 0.40 0.34 0.00 1.00 0.20 0.51 0.36 6 372549 Transcript 0 3.37 4.22 6.57 6.34 3.26 4.35 6.49 9.71 5.21 10.95 2.76 0.39 3.16 0.32 7.36 9.16 1.68 3.61 0.09 3.38 3.03 1.17 1.41 7 436387 Transcript 0 3.41 2.18 1.84 3.46 5.30 8.31 7.26 3.06 3.15 3.42 7.92 9.06 6.75 3.64 6.86 4.14 5.06 1.45 1.30 2.07 2.62 0.70 0.20 8 455203 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 461351 Transcript 0 2.89 1.71 4.17 5.75 0.00 6.24 1.15 4.82 4.01 8.70 12.03 7.12 3.40 7.46 11.50 10.97 1.90 0.00 0.00 0.12 0.04 2.68 0.12 10 ER1a ExonRegion 0 15.33 4.27 0.75 0.56 9.83 10.70 3.22 4.27 2.62 0.44 18.82 0.00 0.00 11.67 29.07 33.06 21.96 0.00 0.00 0.00 3.15 0.00 0.00 11 E1_Ab KnownBoundary 0 40.90 11.84 1.77 0.00 23.60 37.31 11.97 7.43 6.25 5.10 49.12 0.00 0.00 41.09 64.90 78.01 57.41 0.00 0.00 0.00 5.93 0.00 0.00 12 E1_Ac KnownBoundary 1 194.92 75.58 136.57 74.12 37.35 157.24 98.26 105.23 44.10 140.30 70.39 12.00 25.00 102.83 396.44 88.35 132.77 1.95 8.19 98.30 6.98 35.58 16.22 13 ER1b ExonRegion 1 97.43 35.95 55.14 28.01 44.28 70.57 40.70 38.47 21.95 58.97 62.85 7.26 12.10 70.41 181.94 87.34 75.92 0.66 4.11 35.48 8.18 14.58 8.05 14 ER1c ExonRegion 1 502.07 236.62 248.68 112.92 301.45 309.78 237.49 108.52 70.80 206.85 293.25 39.74 67.08 203.51 329.55 397.04 257.82 4.78 32.93 96.47 54.82 69.95 73.42 15 E1a_E1f KnownJunction 0 0.00 11.77 256.20 94.56 3.40 2.90 1.81 85.48 59.32 166.22 18.00 18.61 8.28 11.42 22.50 7.01 8.98 0.00 0.00 14.00 0.00 0.00 0.00 16 ER1d ExonRegion 0 1.04 1.00 1.32 1.49 0.00 2.25 0.32 5.54 4.39 2.92 1.90 0.00 0.00 0.00 2.09 1.46 0.81 0.68 0.00 2.00 0.39 1.02 0.72 17 E1b_E1f KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER1e ExonRegion 0 0.76 1.89 0.70 0.58 0.19 0.65 0.57 2.22 2.21 2.46 3.04 0.31 0.00 0.23 2.69 2.97 0.00 1.72 0.00 1.22 5.82 0.30 0.00 19 ER1f ExonRegion 0 3.37 4.22 6.57 6.34 3.26 4.35 6.49 9.71 5.21 10.95 2.76 0.39 3.16 0.32 7.36 9.16 1.68 3.61 0.09 3.38 3.03 1.17 1.41 20 E1_Af KnownBoundary 0 7.48 5.92 4.61 3.40 4.33 0.00 4.50 8.58 7.20 9.70 0.00 0.00 6.82 0.00 9.64 7.69 0.00 4.68 0.00 6.46 2.72 2.33 0.00 21 ER1g ExonRegion 0 158.67 54.21 192.92 61.54 26.17 28.22 34.46 77.32 52.63 141.00 162.61 48.44 11.36 92.55 201.46 100.68 148.13 18.59 14.38 29.09 47.48 22.82 19.27 22 E1c_E2a KnownJunction 1 67.94 31.18 97.31 33.40 12.22 13.17 13.47 46.58 31.86 92.70 215.74 43.06 12.50 127.73 214.72 75.88 241.98 24.17 13.27 33.56 85.07 23.27 11.78 23 E2_Ab NovelBoundary 1 3.19 5.79 5.77 11.45 4.33 10.45 16.30 21.32 10.04 30.46 41.69 6.30 0.00 4.83 15.33 8.20 70.41 5.47 0.00 3.20 8.03 9.25 0.00 24 E2a_E2d KnownJunction 1 154.10 44.27 303.74 107.68 36.50 53.38 52.82 126.26 83.59 219.44 1175.51 86.58 27.27 252.16 274.43 209.86 710.89 38.30 58.64 123.94 245.69 44.27 51.90 25 ER2a ExonRegion 1 106.18 42.71 276.32 101.84 24.23 42.79 33.17 123.30 85.77 246.78 793.56 60.37 23.45 211.41 251.76 134.57 559.87 43.63 28.14 79.08 200.05 44.68 25.12 26 ER2b ExonRegion 1 116.41 45.08 310.84 138.79 22.74 49.82 46.56 145.48 93.66 281.76 1113.67 85.87 32.83 251.74 280.94 221.92 764.16 65.29 46.19 121.28 247.18 54.87 49.43 27 ER2c ExonRegion 0 4.71 8.52 23.50 17.21 6.55 8.80 12.82 21.39 15.90 33.36 37.44 14.97 11.68 20.89 23.36 40.47 39.29 22.33 3.66 17.13 8.49 11.37 9.90 28 E2_Db KnownBoundary 0 6.52 8.75 23.39 15.65 19.19 2.90 8.39 15.40 14.21 30.89 16.74 12.30 19.15 8.12 4.45 15.64 12.25 14.84 0.00 5.94 8.34 0.00 0.00 29 E2_Dc KnownBoundary 0 0.00 0.00 1.83 0.00 0.00 2.90 2.25 0.00 3.59 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 0.00 0.00 0.00 0.00 0.00 30 E2_Dd KnownBoundary 0 0.00 3.22 0.00 0.00 3.74 2.78 6.54 4.11 1.79 6.53 0.00 0.00 8.28 0.00 0.00 0.00 4.58 0.00 0.00 0.00 0.00 0.00 0.00 31 E2d_E2d KnownJunction 0 19.71 11.25 13.36 13.35 14.86 8.29 17.44 15.28 12.96 35.75 27.06 0.00 6.33 19.07 10.75 13.67 17.77 4.48 9.60 5.75 2.72 5.33 3.93 32 ER2d ExonRegion 0 8.47 12.20 24.10 14.99 10.70 12.84 13.24 19.01 20.17 46.26 24.48 12.99 23.45 13.53 12.57 14.86 9.90 22.17 6.37 7.09 6.61 2.08 2.94 33 ER2e ExonRegion 0 10.71 9.93 21.48 13.71 10.70 12.62 17.60 19.11 17.58 43.11 21.94 10.95 24.00 16.62 11.61 14.51 16.50 15.76 6.37 6.38 6.48 2.57 2.94 34 ER2f ExonRegion 0 13.55 12.20 19.61 15.54 18.20 19.07 20.39 19.70 15.07 42.89 33.25 8.66 23.45 24.69 16.25 17.83 17.82 9.24 9.56 6.38 2.64 4.17 5.29 35 ER2g ExonRegion 0 3.50 4.36 3.68 2.63 5.19 10.71 10.47 5.71 5.72 6.68 10.85 5.73 2.75 4.80 6.03 4.03 7.08 2.54 2.60 1.26 5.23 1.07 0.41 36 E2_Ad KnownBoundary 0 9.63 6.71 0.00 3.33 7.64 10.51 16.56 3.74 3.39 4.19 0.00 0.00 0.00 3.00 5.32 4.10 4.77 2.53 0.00 3.26 0.00 0.00 0.00 37 ER2h ExonRegion 1 121.17 61.93 408.97 187.68 79.73 86.86 77.63 169.35 115.48 344.15 912.50 176.82 34.54 470.96 648.96 583.14 584.33 137.15 128.43 133.27 171.64 152.52 117.93 38 E2e_E3a KnownJunction 1 189.29 73.01 373.88 207.53 140.41 107.61 94.95 151.56 91.46 303.62 406.00 338.36 33.11 644.95 1156.81 1009.48 276.39 189.57 202.55 134.35 107.18 267.41 180.54 39 ER3a ExonRegion 1 213.18 81.20 450.74 184.24 231.67 144.44 105.61 174.49 114.18 289.79 387.84 260.17 124.01 402.29 666.88 938.64 326.02 204.54 111.19 101.04 97.37 154.91 152.16 40 E3_Da KnownBoundary 0 10.30 0.00 0.00 7.99 12.05 19.53 10.91 3.74 1.59 1.42 12.63 6.15 21.26 0.00 14.09 7.35 9.07 3.69 0.00 9.46 0.00 2.39 0.00 41 E3a_E4a KnownJunction 0 297.53 126.75 469.35 151.16 639.05 363.82 226.38 174.89 115.28 216.45 367.25 198.06 247.06 310.38 499.04 688.02 374.38 162.04 64.28 129.50 107.86 91.61 109.01 42 E3a_E5a NovelJunction 0 3.11 9.60 22.18 7.09 20.12 0.00 5.79 1.77 4.54 7.68 28.90 6.00 6.82 12.07 18.79 7.35 13.46 2.57 0.00 0.00 0.00 0.00 0.00 43 ER3b ExonRegion 0 3.32 0.00 0.00 4.30 5.40 5.90 4.05 0.41 0.58 0.16 5.00 12.39 10.76 2.48 7.68 4.25 3.04 0.36 0.00 2.88 0.00 0.33 0.00 44 ER4a ExonRegion 0 107.35 149.33 392.08 152.39 444.72 466.55 399.27 161.84 104.75 275.74 547.72 205.35 124.06 452.59 522.23 516.03 399.66 126.92 75.15 96.45 133.83 117.55 89.96 45 E4a_E5a KnownJunction 0 134.25 393.48 369.53 137.68 212.31 275.64 290.81 204.47 122.28 352.94 920.50 344.66 172.07 555.54 659.87 309.24 512.01 123.78 58.92 131.41 165.81 80.40 50.28 46 ER5a ExonRegion 0 270.41 287.38 341.52 157.35 115.79 131.45 127.82 171.55 112.13 298.73 659.71 428.86 132.92 513.11 596.50 503.94 417.23 103.20 99.33 99.56 136.15 130.39 55.66 47 E5a_E6a KnownJunction 1 376.21 199.24 339.88 170.81 118.51 102.50 130.68 156.25 100.20 284.49 757.14 338.81 50.00 575.90 894.00 940.27 407.67 125.98 119.34 140.11 116.08 206.91 131.80 48 ER6a ExonRegion 0 747.65 192.15 515.94 235.81 151.47 97.06 103.40 244.13 144.66 417.45 1081.20 409.40 102.61 603.90 719.94 883.23 630.95 160.98 137.20 121.85 145.61 202.00 137.38 49 E6a_E7a KnownJunction 0 1758.83 266.73 542.15 250.12 227.08 132.31 102.15 277.17 153.56 424.23 1350.13 528.32 181.64 754.67 814.39 954.79 855.07 141.15 200.57 140.87 199.48 180.70 176.87 50 E7_Aa NovelBoundary 0 21.63 6.31 7.72 10.32 4.24 0.00 21.02 11.34 0.00 11.15 21.48 19.21 27.27 9.54 25.59 35.63 4.58 5.14 9.60 6.52 2.78 3.12 0.00 51 ER7a ExonRegion 0 633.74 109.34 358.49 170.30 126.67 67.30 98.93 204.95 128.58 346.54 913.60 379.15 136.91 557.00 589.14 584.18 575.41 118.10 105.32 109.55 187.41 116.01 104.59 52 E7_Da KnownBoundary 0 240.26 69.72 244.91 122.40 120.88 53.78 151.17 166.39 114.38 288.82 491.28 304.30 108.76 475.19 537.36 436.55 412.25 100.86 65.04 111.34 149.81 79.97 87.67 53 ER7b ExonRegion 0 192.41 45.16 224.70 84.97 74.61 40.56 79.99 124.97 83.87 202.34 454.41 280.21 74.60 415.09 474.19 368.20 307.90 103.60 92.01 90.10 98.86 88.77 49.10 54 E7_Db NovelBoundary 0 17.19 17.63 30.87 15.68 42.11 38.16 61.83 19.55 17.97 39.84 43.96 55.07 39.93 37.97 47.72 72.55 51.89 17.45 4.61 23.59 10.69 11.76 0.00 55 E7b_E8a KnownJunction 0 0.00 0.00 5.14 3.56 0.00 13.57 0.00 9.45 7.06 16.31 17.48 6.30 6.33 7.18 8.90 15.81 0.00 0.00 0.00 0.00 0.00 5.69 0.00 56 E7b_E9a KnownJunction 0 146.99 22.96 275.30 86.87 41.77 19.87 41.03 125.60 68.08 165.68 404.05 214.72 61.03 368.06 458.25 195.42 220.76 108.82 115.11 51.65 48.62 130.79 25.10 57 I7 Intron 0 34.56 22.04 29.25 33.99 50.08 35.06 43.00 28.16 19.52 39.61 37.50 42.67 38.84 47.43 36.02 52.61 32.43 15.65 8.84 15.10 10.24 11.67 10.49 58 I7_AR1 ActiveIntronRegion 0 43.81 24.45 22.26 27.84 36.78 31.08 40.82 24.27 22.77 43.38 48.51 55.24 26.92 45.72 35.16 51.94 40.41 23.34 9.22 21.83 13.38 9.52 9.45 59 I7_SR1 SilentIntronRegion 0 32.49 26.36 8.78 11.25 36.07 22.89 31.23 12.83 12.68 20.59 20.03 44.08 31.08 37.86 34.71 45.87 34.12 6.48 7.71 17.51 9.00 8.69 5.98 60 I7_AR2 ActiveIntronRegion 0 19.05 4.07 0.00 0.00 8.03 7.34 17.21 0.00 0.00 0.00 15.46 48.75 55.46 25.42 27.25 26.75 19.81 0.00 3.19 10.64 4.41 2.08 5.87 61 I7_SR2 SilentIntronRegion 0 14.82 4.52 0.00 0.00 5.65 3.67 12.80 0.00 0.00 0.00 8.16 31.75 17.20 9.02 11.93 25.10 15.77 0.00 3.89 9.69 0.98 1.39 7.18 62 I7_AR3 ActiveIntronRegion 0 75.68 26.80 36.88 47.60 85.15 43.58 76.04 40.11 36.53 55.27 44.98 79.40 93.91 53.57 48.19 83.92 46.31 13.84 12.54 17.84 8.29 18.90 9.03 63 I7_SR3 SilentIntronRegion 0 31.40 26.61 7.16 1.77 24.49 14.39 28.86 11.21 5.62 9.68 15.18 13.65 25.37 24.20 21.65 18.14 8.63 4.01 1.39 5.56 2.88 4.52 3.84 64 I7_AR4 ActiveIntronRegion 0 32.57 30.83 49.29 57.92 59.92 50.47 50.88 48.56 26.66 60.44 51.21 58.03 72.73 73.72 53.12 71.32 44.53 28.50 14.96 16.93 14.25 10.34 18.11 65 I7_SR4 SilentIntronRegion 0 16.14 16.57 24.19 27.21 35.78 22.66 25.86 18.94 12.13 24.51 23.10 27.01 18.27 38.75 29.57 36.90 17.89 10.80 5.94 9.35 6.42 10.27 9.49 66 I7_AR5 ActiveIntronRegion 0 16.35 14.15 23.99 26.68 47.56 31.17 36.83 17.92 16.78 33.27 34.95 26.02 25.97 44.73 29.57 55.60 39.27 12.92 6.89 13.15 7.49 11.60 12.25 67 I7_SR5 SilentIntronRegion 0 45.80 21.56 32.07 35.85 64.71 47.01 54.26 32.79 18.74 45.68 42.64 37.47 30.04 43.68 31.99 50.43 30.25 12.01 8.38 17.69 14.02 15.21 7.97 68 E8_Aa NovelBoundary 0 42.23 44.07 60.08 75.68 261.88 121.80 129.40 66.13 35.33 71.86 43.75 52.67 19.64 72.34 37.33 61.95 16.74 8.79 9.22 14.83 12.17 14.88 27.57 69 ER8a ExonRegion 0 5.40 1.78 3.43 4.77 0.00 5.13 1.19 5.01 3.18 8.14 11.45 15.04 3.87 12.83 25.60 9.51 2.15 0.00 0.00 0.37 0.11 2.34 0.37 70 E8_Da NovelBoundary 0 78.24 44.33 65.31 81.34 130.73 69.28 67.92 71.39 31.22 72.55 88.50 62.27 75.97 59.98 86.28 89.89 83.40 29.76 12.33 28.51 19.65 26.76 24.33 71 E8a_E9a KnownJunction 0 3.26 3.35 3.93 8.92 0.00 0.00 2.25 0.00 1.79 1.67 7.16 0.00 0.00 2.35 0.00 7.60 3.55 0.00 0.00 0.00 0.00 0.00 0.00 72 I8 Intron 0 53.56 18.79 37.56 45.41 73.53 50.53 40.39 43.39 26.29 53.73 51.46 44.60 29.09 50.44 55.02 56.76 34.59 14.55 7.91 11.40 14.37 13.42 9.35 73 I8_AR1 ActiveIntronRegion 0 5.74 1.85 0.00 0.00 17.06 16.44 1.18 0.00 0.00 0.00 8.73 29.46 27.89 11.25 15.23 24.15 14.91 0.00 0.00 1.94 1.85 3.72 2.62 74 I8_SR1 SilentIntronRegion 0 102.79 28.61 58.08 70.21 135.11 82.74 74.97 81.01 45.20 94.48 76.26 64.40 55.74 70.23 73.57 85.79 55.60 24.25 10.49 17.53 22.96 19.88 15.33 75 I8_AR3 ActiveIntronRegion 0 34.71 21.97 64.60 76.93 74.27 69.63 40.61 64.50 38.24 74.25 65.99 51.45 28.08 72.89 63.99 71.25 45.96 23.31 12.09 12.51 22.87 13.68 11.86 76 I8_AR4 ActiveIntronRegion 0 49.71 15.02 20.83 21.12 52.07 34.46 35.09 12.96 11.73 28.10 35.02 43.92 8.08 31.00 49.02 36.90 19.94 6.47 5.34 8.57 5.92 13.28 3.94 77 I8_SR2 SilentIntronRegion 0 23.47 11.14 3.04 12.27 20.56 3.05 4.30 9.94 9.01 14.11 33.01 6.02 13.31 31.64 40.18 28.95 10.58 2.95 5.30 8.12 4.89 6.93 6.51 78 E9_Aa NovelBoundary 0 25.56 9.34 40.33 22.47 7.98 7.27 15.90 51.26 28.27 53.40 23.58 13.05 30.68 38.85 47.47 51.70 20.01 20.85 0.00 3.26 8.71 9.06 3.93 79 ER9a ExonRegion 0 226.94 51.84 173.73 81.69 78.38 46.91 51.63 79.05 43.09 118.44 336.57 249.99 83.85 217.33 311.27 363.08 221.94 59.21 65.52 42.04 62.27 67.20 48.07 80 ER9b ExonRegion 0 0.00 2.03 7.35 0.00 2.68 0.00 1.32 1.73 2.47 0.00 0.00 4.33 9.38 6.50 2.90 8.92 9.90 1.85 0.00 0.00 0.00 0.00 5.87