Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PPCS Gene 0 82.66 12.11 42.19 29.09 64.30 63.84 36.81 48.35 40.03 33.27 63.64 83.08 56.34 81.41 95.43 63.13 66.57 10.04 15.97 14.40 42.73 59.80 41.68 2 372562 Transcript 0 2.79 0.68 2.77 3.28 3.92 6.01 1.68 14.08 6.98 1.59 2.98 0.00 0.26 1.44 3.40 1.61 2.32 4.61 2.12 5.96 2.63 2.46 6.64 3 455780 Transcript 0 1.45 0.00 0.00 0.00 0.84 4.44 0.28 0.00 0.80 0.00 0.23 0.00 0.00 2.99 2.79 0.00 0.00 0.00 0.00 1.06 0.75 0.00 0.00 4 372560 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 472013 Transcript 0 33.40 3.00 3.92 5.93 12.16 14.36 7.22 9.48 8.38 6.23 18.57 6.97 9.49 37.76 31.80 45.03 25.80 2.00 1.06 3.25 8.54 7.72 11.54 6 435501 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 372561 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 372556 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 471420 Transcript 0 0.82 0.00 1.16 0.20 0.26 0.35 0.26 0.00 0.95 1.68 3.41 3.31 0.00 0.39 0.85 3.10 4.50 0.00 0.00 0.21 4.96 1.95 0.28 10 466871 Transcript 0 0.00 0.00 0.89 1.35 10.05 3.51 1.30 3.09 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 1.94 0.00 11 482168 Transcript 0 27.26 0.71 8.72 10.20 9.47 30.04 10.04 9.24 14.01 10.12 24.87 8.07 12.96 42.27 37.74 23.60 35.37 1.94 2.17 7.81 9.39 9.99 6.32 12 469615 Transcript 0 8.51 2.12 0.91 2.57 3.29 6.45 5.24 3.59 0.91 0.43 3.84 17.42 9.77 15.35 14.90 8.81 8.07 2.98 4.81 5.78 1.10 1.15 3.67 13 ER1a ExonRegion 0 2.09 1.35 4.42 1.49 7.84 9.46 3.35 7.66 7.09 1.75 3.90 0.00 0.51 0.64 2.35 3.21 0.25 6.69 4.24 2.64 2.36 1.81 9.01 14 E1a_E2h KnownJunction 0 3.48 0.00 1.12 5.06 0.00 2.56 0.00 20.50 6.86 1.42 2.05 0.00 0.00 2.24 4.45 0.00 4.39 2.53 0.00 9.27 2.90 3.12 4.27 15 ER2a ExonRegion 0 0.78 0.00 0.00 0.00 1.69 7.05 0.56 0.00 0.36 0.00 0.46 0.00 0.00 2.74 2.67 0.00 0.00 0.00 0.00 0.00 1.51 0.00 0.00 16 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 11.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E2_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.03 0.00 0.00 18 E2_Ad KnownBoundary 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E2_Ae KnownBoundary 0 77.35 2.70 0.00 4.53 8.06 60.31 16.61 3.66 11.02 1.29 18.16 0.00 6.49 4.77 0.00 34.35 41.05 7.05 0.00 8.25 44.79 10.47 44.39 20 ER2b ExonRegion 0 9.74 0.00 0.00 1.36 9.63 14.67 2.91 0.00 2.72 0.23 4.25 1.73 0.00 5.52 7.54 2.97 3.96 0.37 0.00 1.28 12.34 0.42 2.35 21 ER2c ExonRegion 0 44.59 2.30 0.41 4.82 11.59 45.11 11.12 3.23 8.81 1.22 13.14 4.33 7.19 11.59 9.48 22.19 27.07 2.96 3.19 4.40 35.85 7.36 33.09 22 ER2d ExonRegion 0 61.38 6.10 1.23 5.45 13.38 60.52 19.86 5.19 12.35 2.29 19.33 4.33 9.38 16.24 23.21 29.72 39.61 3.70 6.37 8.51 46.28 12.50 49.92 23 ER2e ExonRegion 1 205.71 27.23 13.42 20.59 73.64 138.30 64.26 11.20 31.52 15.41 59.86 1.49 21.35 145.78 119.64 201.62 76.91 25.51 33.47 14.86 96.70 50.44 169.62 24 E2_Da KnownBoundary 0 15.56 12.37 15.02 6.49 0.00 27.94 13.20 13.92 16.87 13.62 13.58 0.00 0.00 9.95 19.78 69.04 21.04 26.57 4.14 2.62 20.76 18.00 21.85 25 E2a_E2h KnownJunction 0 59.42 0.00 17.68 28.13 15.96 24.99 5.79 12.24 16.72 12.44 12.53 0.00 13.31 2.24 10.63 35.63 8.70 5.47 4.52 0.00 16.80 3.06 50.71 26 ER2f ExonRegion 1 6.48 1.36 16.85 2.16 0.96 5.36 2.81 10.26 7.62 13.22 36.39 2.10 3.44 51.07 50.81 37.98 40.66 15.32 7.99 5.10 40.60 22.45 24.92 27 E2_Af KnownBoundary 1 18.45 2.89 42.43 11.89 0.00 5.79 12.81 32.28 33.16 28.21 51.96 0.00 19.80 109.78 132.15 192.00 42.17 64.54 17.60 6.33 66.35 59.76 124.37 28 ER2g ExonRegion 1 25.35 11.17 34.96 13.13 21.65 65.51 25.25 26.04 20.06 32.82 60.36 10.52 14.40 83.57 93.00 104.57 58.39 25.73 16.17 13.38 67.69 37.97 56.81 29 E2_Ag KnownBoundary 0 38.53 28.22 44.85 23.11 58.91 99.26 65.85 36.02 30.44 49.26 93.55 35.56 25.65 128.73 124.48 94.59 139.69 27.94 20.89 26.65 122.94 60.19 35.17 30 ER2h ExonRegion 1 60.70 15.83 49.14 31.65 42.79 58.92 29.45 54.37 42.01 53.07 93.72 19.15 30.09 137.21 146.54 99.29 105.04 22.19 28.40 17.27 115.22 67.94 58.37 31 E2_Db KnownBoundary 0 57.34 0.00 2.99 15.28 7.22 2.90 6.71 9.12 11.28 12.09 18.90 6.30 6.82 46.50 36.96 65.20 41.05 0.00 0.00 2.43 5.62 6.25 16.99 32 E2b_E2h KnownJunction 0 59.49 3.35 91.72 44.65 40.92 83.65 28.18 61.32 56.86 58.91 70.12 12.60 61.85 133.44 161.07 90.83 128.85 33.04 12.61 32.79 119.17 130.55 96.12 33 ER2i ExonRegion 0 33.40 3.00 3.92 5.93 12.16 14.36 7.22 9.48 8.38 6.23 18.57 6.97 9.49 37.76 31.80 45.03 25.80 2.00 1.06 3.25 8.54 7.72 11.54 34 E2_Ah KnownBoundary 0 27.49 0.00 5.09 5.43 14.77 2.84 13.56 4.31 11.00 3.14 19.79 18.16 13.64 50.80 61.69 43.58 28.52 1.66 0.00 0.00 5.75 5.69 8.62 35 ER2j ExonRegion 1 73.72 13.20 103.79 68.61 40.36 79.05 41.47 75.83 75.71 70.35 106.76 29.39 66.86 127.48 160.37 146.20 160.06 23.23 23.86 43.28 125.19 106.22 84.73 36 E2_Ai KnownBoundary 1 124.17 29.80 117.91 68.22 71.73 114.65 49.11 75.45 79.63 81.45 158.83 36.31 59.90 126.73 159.22 136.37 222.72 18.78 34.82 43.34 157.22 95.34 71.71 37 ER2k ExonRegion 0 96.19 26.40 90.48 50.28 85.24 158.36 60.50 72.69 76.75 75.98 177.76 59.76 65.49 159.69 171.64 137.41 174.65 33.13 36.92 32.71 199.59 92.98 106.51 38 E2_Dc KnownBoundary 0 27.71 5.00 26.79 4.79 19.78 25.95 17.67 15.44 12.50 11.66 35.27 24.61 12.66 45.32 25.96 36.14 33.10 6.92 0.00 9.01 14.02 33.37 19.89 39 E2c_E4a KnownJunction 0 98.46 11.71 64.04 40.79 57.13 136.00 58.21 68.68 59.20 58.26 100.08 67.97 70.61 129.44 125.35 100.66 141.37 36.40 54.68 22.88 153.70 94.54 109.52 40 E2c_E5a KnownJunction 0 0.00 0.00 1.74 0.00 0.00 0.00 0.00 0.00 1.77 2.95 5.32 6.30 0.00 0.00 0.00 4.10 8.51 0.00 0.00 0.00 9.27 2.82 0.00 41 E2c_E6a KnownJunction 0 0.00 0.00 1.48 1.73 14.86 5.22 0.00 4.89 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.56 3.12 0.00 42 ER2l ExonRegion 0 38.96 2.36 16.45 12.83 35.36 33.32 21.85 13.89 25.37 19.10 34.16 16.70 17.60 81.66 59.06 60.74 61.54 9.56 4.55 7.27 17.21 17.72 22.02 43 E2_Dd KnownBoundary 0 45.12 3.03 18.63 15.08 30.81 20.44 32.37 9.24 23.29 18.13 43.96 12.60 6.82 63.81 75.28 46.48 71.81 6.01 4.42 5.43 20.08 11.33 10.59 44 ER2m ExonRegion 0 29.63 1.42 10.58 9.58 18.94 28.96 14.48 8.51 18.15 11.83 35.31 3.99 17.64 52.00 48.91 27.13 43.44 1.97 4.35 6.99 15.64 11.77 12.63 45 E2_De NovelBoundary 0 40.23 3.03 9.88 4.03 23.77 9.65 23.27 2.51 8.30 5.24 14.95 30.16 41.39 33.26 13.97 50.76 19.35 0.00 4.61 9.72 8.15 3.12 18.10 46 E2e_E4a KnownJunction 0 24.89 0.00 6.86 10.82 0.00 31.12 5.61 9.98 9.87 8.41 14.42 12.15 8.28 32.55 26.58 20.08 27.30 1.91 0.00 8.63 3.15 8.21 0.00 47 I2 Intron 0 31.67 2.29 5.48 4.79 32.29 17.21 13.42 11.75 9.08 5.50 16.38 28.00 34.58 23.76 16.75 14.51 15.58 0.74 2.39 3.19 2.25 7.82 6.93 48 I2_SR1 SilentIntronRegion 0 46.97 1.25 6.72 4.98 26.24 13.71 12.98 12.33 9.03 5.03 17.77 17.14 29.22 30.51 20.25 17.85 21.45 1.24 2.34 5.22 4.59 7.41 9.00 49 I2_AR1 ActiveIntronRegion 0 19.81 2.23 5.09 4.77 40.50 20.29 12.50 12.63 10.51 6.01 15.44 37.27 42.52 18.90 14.80 10.46 10.96 0.24 2.91 1.90 0.43 9.39 5.23 50 I2_SR2 SilentIntronRegion 0 21.24 4.46 4.12 4.57 28.95 14.52 22.07 10.96 6.50 6.10 16.52 42.02 34.75 19.77 14.41 18.71 13.54 0.00 0.47 1.21 0.63 6.23 4.51 51 I2_AR2 ActiveIntronRegion 0 17.01 7.04 1.20 3.77 24.75 25.21 9.48 2.38 3.55 4.46 12.25 21.65 18.26 13.69 8.03 11.04 7.43 1.62 2.16 0.30 0.00 2.49 7.18 52 E3_Aa NovelBoundary 0 39.12 60.71 36.57 34.13 26.74 44.35 21.68 25.55 38.28 23.10 10.06 37.81 6.82 30.20 44.13 56.82 20.48 51.44 12.71 35.35 8.28 15.12 25.52 53 ER3a ExonRegion 1 17.02 4.25 1.83 5.13 6.58 12.91 10.49 4.63 1.83 0.85 7.67 34.85 19.54 30.70 29.81 17.63 16.15 5.96 9.62 11.56 2.20 2.31 7.34 54 E3_Da NovelBoundary 0 114.39 105.70 88.23 78.41 109.00 115.27 74.72 113.73 80.99 60.17 42.33 17.26 18.67 42.67 24.11 71.86 54.79 93.06 54.03 99.58 53.62 8.27 60.69 55 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 I3 Intron 0 52.91 3.43 1.85 4.80 21.69 22.30 9.84 4.35 4.35 4.62 21.54 17.98 11.74 22.62 15.74 23.09 18.95 0.00 1.08 0.72 3.72 4.93 4.96 57 I3_SR1 SilentIntronRegion 1 60.24 4.05 2.18 5.55 24.10 24.21 10.44 5.13 4.78 5.24 24.99 19.21 13.85 25.73 17.34 25.54 21.74 0.00 1.27 0.85 4.39 5.63 5.67 58 E4_Aa NovelBoundary 0 81.64 0.00 6.12 11.25 33.02 26.23 12.54 21.32 15.25 1.53 14.85 18.76 12.66 37.44 23.12 7.60 13.28 8.33 0.00 0.00 0.00 5.69 7.26 59 ER4a ExonRegion 0 253.00 34.58 116.66 78.53 212.03 199.99 118.87 130.69 106.73 87.95 174.82 204.39 180.15 222.05 234.76 152.92 188.27 16.67 41.26 34.68 99.31 155.72 115.37 60 E4_Da KnownBoundary 1 297.39 39.99 191.24 122.63 300.68 190.74 146.05 185.29 150.95 82.33 162.78 476.11 308.26 169.17 204.46 77.67 129.97 0.00 23.72 24.22 34.41 176.17 58.22 61 ER4b ExonRegion 1 213.21 40.98 133.21 91.27 251.27 141.57 110.76 175.05 133.77 87.20 163.17 506.15 233.42 146.72 254.64 90.49 123.25 1.56 38.32 31.13 35.39 223.74 53.45 62 E4_Db KnownBoundary 1 216.33 50.45 122.91 76.81 222.92 141.85 109.83 186.93 121.06 80.94 122.72 393.28 250.96 94.00 227.46 90.40 88.83 1.62 35.86 33.68 20.94 160.43 49.51 63 ER4c ExonRegion 1 183.47 23.73 104.27 80.85 142.62 101.44 69.79 161.22 107.78 83.50 119.34 358.18 157.37 116.08 214.24 69.26 98.79 4.42 31.03 31.99 35.28 192.78 38.31 64 E4_Dc KnownBoundary 1 216.26 11.12 74.66 80.51 146.52 41.85 55.91 103.75 75.58 77.15 115.40 230.33 162.16 69.46 182.95 27.69 88.55 6.47 17.69 22.12 57.14 175.92 19.55 65 ER4d ExonRegion 1 120.28 9.88 41.79 41.74 60.28 38.41 25.56 35.61 36.68 25.39 44.99 147.59 67.90 47.62 101.78 20.21 31.31 2.21 6.75 13.91 20.89 51.64 11.62 66 ER4e ExonRegion 1 19.05 7.12 6.74 3.41 6.69 5.50 1.32 1.73 1.24 0.00 1.93 17.32 9.38 3.25 4.35 0.00 0.00 0.00 0.00 2.13 0.00 2.08 2.94 67 ER4f ExonRegion 0 2.12 0.00 0.00 0.00 0.00 1.83 0.00 0.00 1.24 0.00 0.00 0.00 0.00 3.25 2.90 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 68 ER5a ExonRegion 0 1.64 0.00 0.58 0.39 0.52 0.71 0.52 0.00 0.14 0.41 1.49 0.31 0.00 0.78 1.70 2.11 0.50 0.00 0.00 0.41 0.65 1.09 0.57 69 ER6a ExonRegion 0 0.00 0.00 0.30 0.96 5.25 1.79 2.60 1.29 0.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.84 0.75 0.00