Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HECTD3 Gene 0 86.26 17.72 71.79 33.43 38.24 97.74 36.08 80.57 67.68 70.43 103.19 54.78 75.07 142.60 159.50 156.30 107.94 38.88 27.98 25.26 111.23 55.10 57.38 2 443709 Transcript 0 0.90 0.30 0.27 0.00 1.54 3.74 1.45 1.76 0.39 0.45 3.33 0.00 0.43 3.79 2.74 3.63 5.01 1.92 0.88 0.32 2.98 2.04 0.76 3 372172 Transcript 0 22.62 8.68 46.77 22.08 13.30 68.09 24.56 52.85 50.55 59.21 101.53 40.83 48.46 146.08 130.01 175.35 122.29 37.62 36.15 26.07 111.80 42.46 43.45 4 372168 Transcript 0 8.12 2.81 8.22 4.13 7.55 10.93 9.74 10.55 8.38 12.36 6.40 7.59 3.77 14.42 21.19 14.52 9.99 7.04 6.28 5.76 11.12 7.95 10.35 5 466423 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 484564 Transcript 0 6.45 0.12 7.28 3.87 5.77 11.15 3.08 13.17 6.45 8.10 1.57 1.44 12.41 6.26 5.46 7.90 3.50 4.82 9.90 2.90 12.19 5.27 5.15 7 487488 Transcript 0 13.31 0.70 11.51 4.81 13.29 17.32 7.57 31.32 19.40 12.62 8.33 7.26 16.43 12.23 11.22 26.73 16.68 12.10 11.69 4.40 20.94 8.01 16.52 8 486296 Transcript 0 8.72 3.62 15.50 6.06 5.45 14.50 6.45 13.10 7.13 7.13 10.78 2.54 3.83 8.49 9.34 16.66 5.30 11.17 4.56 1.33 13.22 7.72 4.04 9 486132 Transcript 0 32.91 6.05 11.33 12.04 21.99 25.53 16.98 27.23 21.26 19.07 11.37 8.58 21.98 12.70 13.95 25.32 18.06 9.21 10.56 3.23 27.24 10.92 9.06 10 ER1a ExonRegion 0 1.80 0.60 0.54 0.00 3.07 7.47 2.89 3.52 0.78 0.89 6.66 0.00 0.87 7.58 5.48 7.27 10.02 3.83 1.77 0.63 5.96 4.09 1.52 11 ER1b ExonRegion 0 3.72 3.24 12.62 0.83 2.82 22.82 6.61 11.68 7.80 14.73 23.57 1.31 4.52 56.52 36.27 42.91 31.60 10.01 7.59 5.89 34.65 14.60 15.70 12 E1a_E2a KnownJunction 1 27.41 0.00 12.92 3.43 15.03 21.07 18.46 40.58 15.54 40.00 64.17 0.00 0.00 104.30 91.72 93.82 57.41 28.73 0.00 14.70 59.12 14.08 29.54 13 ER2a ExonRegion 0 14.19 2.22 18.04 4.06 7.23 21.84 13.68 30.25 23.08 39.42 51.44 10.18 12.59 102.62 97.57 99.73 68.83 23.34 10.91 16.04 89.74 35.03 24.20 14 E2_Da KnownBoundary 0 20.23 3.22 37.67 5.49 8.66 18.63 23.49 32.45 37.53 42.42 17.21 12.15 8.28 85.35 101.86 141.16 85.18 31.96 27.95 18.22 73.21 38.88 15.62 15 ER2b ExonRegion 0 16.75 9.07 37.89 7.83 7.23 38.17 17.66 31.53 33.78 37.14 65.57 19.95 24.55 110.47 104.93 108.36 89.03 10.97 24.56 15.51 101.56 25.26 21.63 16 E2b_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E3a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER3a ExonRegion 0 27.71 8.87 36.09 14.74 16.05 91.19 27.80 47.14 55.02 42.75 77.67 24.01 34.54 146.17 102.86 142.39 126.03 15.12 14.48 31.72 123.01 30.12 37.64 19 ER3b ExonRegion 0 28.57 8.13 36.76 21.12 16.05 104.53 26.48 54.45 58.05 48.17 79.25 17.32 28.14 146.98 132.01 153.06 130.39 17.55 19.11 29.79 128.92 34.38 42.58 20 ER3c ExonRegion 0 27.89 5.92 48.63 27.14 14.48 86.69 23.22 70.02 56.20 61.83 117.54 32.47 42.50 159.91 147.20 187.06 134.84 41.99 32.77 23.88 116.66 50.26 50.14 21 E3b_E4a KnownJunction 0 27.19 9.47 73.98 37.46 18.76 116.13 32.99 79.11 68.40 87.33 139.19 53.27 94.64 167.46 203.10 266.60 162.88 64.21 69.65 23.71 131.71 40.54 50.45 22 E3b_E5a NovelJunction 0 0.00 0.00 4.64 1.66 0.00 10.90 1.81 4.44 12.41 1.67 2.68 0.00 0.00 7.42 0.00 11.62 4.77 6.05 4.71 3.20 14.89 2.63 7.85 23 E4_Aa NovelBoundary 0 10.82 0.00 3.37 9.29 12.14 15.39 6.27 20.13 25.40 14.26 2.68 0.00 6.66 11.89 11.37 30.93 4.21 3.94 4.61 0.00 15.14 3.12 7.77 24 ER4a ExonRegion 0 20.04 7.64 51.04 28.43 14.76 85.89 27.69 69.96 61.60 76.55 149.60 42.75 60.18 188.79 176.91 221.71 156.45 44.51 46.33 32.57 130.63 57.25 69.77 25 E4_Da NovelBoundary 0 16.23 0.00 3.52 15.58 0.00 17.21 9.72 37.09 30.79 11.15 0.00 0.00 0.00 11.54 9.27 8.72 3.74 4.39 13.37 6.33 17.17 14.27 8.02 26 E4a_E5a KnownJunction 0 31.86 21.11 60.82 32.93 12.65 64.11 27.16 57.96 56.37 82.71 132.45 67.37 48.21 191.71 155.39 269.67 162.79 54.18 60.52 39.12 150.67 68.28 50.45 27 I4 Intron 0 11.80 1.37 5.86 5.83 8.13 26.01 7.15 11.75 14.92 8.08 5.88 4.21 9.78 7.50 9.11 12.05 6.69 4.03 5.92 3.95 13.77 4.22 5.95 28 I4_AR1 ActiveIntronRegion 0 11.87 1.38 5.90 5.87 8.19 26.19 7.20 11.83 15.01 8.13 5.91 4.24 9.85 7.55 9.16 12.13 6.73 4.06 5.96 3.98 13.86 4.25 5.99 29 E5_Aa NovelBoundary 0 6.96 3.35 3.19 7.79 3.57 36.34 16.96 24.32 20.40 18.27 6.90 0.00 6.82 4.94 4.45 28.54 4.39 13.22 22.12 3.13 13.84 3.00 3.76 30 ER5a ExonRegion 0 29.54 7.38 65.73 28.11 22.44 62.51 39.93 67.09 73.05 85.40 130.17 86.84 83.08 204.13 149.66 207.03 146.28 70.00 40.91 42.01 140.16 68.01 67.54 31 E5_Ab KnownBoundary 0 62.83 11.58 62.86 34.49 31.58 117.83 62.89 72.45 97.86 94.10 127.14 59.72 81.65 220.26 183.70 236.09 196.26 68.73 47.44 32.73 123.62 64.97 86.05 32 ER5b ExonRegion 0 44.54 16.98 61.53 26.46 48.34 157.91 47.06 81.12 96.82 89.31 142.15 80.57 90.03 192.95 214.50 233.44 185.78 52.06 33.31 46.35 168.01 77.23 81.65 33 E5a_E6a KnownJunction 0 65.12 16.05 78.65 22.67 63.75 185.23 68.58 96.85 116.78 91.28 171.73 140.90 85.38 198.36 229.93 205.25 207.76 44.77 36.61 71.72 179.34 118.43 100.56 34 ER6a ExonRegion 0 54.68 14.54 71.39 28.02 42.44 122.77 52.66 77.70 94.19 94.73 152.77 101.86 98.00 226.88 211.38 261.36 188.38 72.53 45.01 46.70 167.23 99.73 90.49 35 E6a_E7a KnownJunction 0 96.61 40.12 77.14 32.83 45.33 121.92 66.38 77.05 99.74 98.29 187.15 151.55 100.32 228.38 288.15 288.56 181.11 91.57 56.75 68.33 168.65 143.41 98.34 36 ER7a ExonRegion 0 66.91 25.95 69.74 28.59 36.65 129.25 44.38 70.28 96.21 86.40 174.61 107.66 109.23 221.82 193.16 282.89 162.34 72.93 38.19 63.83 190.45 92.88 92.98 37 E7_Da NovelBoundary 0 17.34 0.00 3.02 0.00 14.01 10.85 23.94 1.81 0.00 13.08 5.00 0.00 0.00 9.95 4.45 0.00 0.00 0.00 0.00 9.01 8.28 0.00 0.00 38 E7a_E8a KnownJunction 0 56.31 26.71 58.57 24.14 51.10 140.77 44.52 78.29 89.73 90.09 147.83 194.76 204.05 234.09 160.46 270.36 174.66 58.28 30.49 80.92 212.08 79.54 50.96 39 E8_Aa NovelBoundary 0 25.26 5.79 17.06 4.86 16.30 14.14 3.80 3.90 6.22 11.23 2.32 0.00 0.00 0.00 15.20 3.67 4.30 15.46 4.80 0.00 6.12 0.00 0.00 40 ER8a ExonRegion 0 55.80 16.42 98.47 39.05 50.75 131.81 49.46 92.21 102.05 108.12 207.96 118.04 157.19 245.92 263.57 284.42 183.04 69.77 52.84 53.43 182.98 85.34 111.77 41 E8_Ab NovelBoundary 0 59.05 5.13 81.52 36.63 34.21 81.94 44.21 92.75 56.31 97.56 99.08 57.32 89.77 166.52 179.99 222.93 105.75 42.28 44.52 35.67 96.37 50.52 84.00 42 E8_Da NovelBoundary 0 13.85 0.00 4.52 3.53 12.05 31.00 16.74 2.55 9.69 12.20 9.79 0.00 0.00 5.06 0.00 7.35 8.88 9.62 0.00 3.26 17.79 3.06 7.94 43 E8a_E8c KnownJunction 0 58.68 17.89 126.46 44.88 104.07 96.99 66.20 128.48 106.28 139.09 184.36 201.67 119.31 293.13 318.07 418.18 145.02 69.60 62.97 66.15 190.95 90.81 173.63 44 ER8b ExonRegion 0 59.26 12.47 118.86 43.70 76.70 102.69 61.61 110.28 96.50 131.82 182.21 157.59 142.26 276.86 285.29 387.37 159.54 59.62 57.76 57.02 174.97 86.95 162.49 45 ER8c ExonRegion 0 8.12 2.81 8.22 4.13 7.55 10.93 9.74 10.55 8.38 12.36 6.40 7.59 3.77 14.42 21.19 14.52 9.99 7.04 6.28 5.76 11.12 7.95 10.35 46 E8_Ac KnownBoundary 0 16.37 6.18 7.84 4.76 8.49 13.29 22.17 10.35 10.71 4.78 2.68 0.00 6.33 12.30 30.78 27.77 8.23 6.80 21.84 12.98 8.46 20.27 15.88 47 ER8d ExonRegion 0 60.70 22.85 102.69 46.10 58.67 138.03 59.59 101.45 111.22 113.05 210.23 149.77 150.08 263.93 246.61 306.94 187.42 76.53 55.02 42.50 189.06 103.76 121.67 48 E8b_E9a KnownJunction 0 76.46 27.36 83.56 51.14 43.12 147.24 57.15 68.68 102.57 82.68 145.25 195.21 150.48 226.56 228.07 273.60 200.28 67.98 44.14 41.93 168.59 106.18 91.77 49 ER9a ExonRegion 0 50.82 25.50 95.75 44.41 36.70 131.27 49.72 94.87 94.37 94.00 113.11 111.43 141.67 208.06 232.92 198.06 145.40 48.96 30.58 38.89 160.32 72.82 85.13 50 E9a_E10a KnownJunction 0 79.94 45.32 101.21 60.37 100.93 208.97 66.60 115.71 121.32 115.86 147.98 114.19 128.89 233.74 214.97 304.88 159.23 65.00 32.00 44.49 179.03 123.08 104.31 51 ER10a ExonRegion 0 66.14 24.87 87.81 42.47 55.22 152.12 60.06 117.73 112.82 114.77 148.26 88.75 94.23 246.72 201.31 250.94 158.29 63.92 40.69 33.22 192.52 96.46 92.37 52 E10a_E11b KnownJunction 0 67.20 19.21 75.31 40.79 55.43 164.39 74.72 111.43 91.93 90.55 163.88 105.93 105.35 252.81 227.09 227.29 142.22 58.62 25.04 18.02 172.05 87.01 101.07 53 ER10b ExonRegion 0 57.15 14.24 74.61 39.07 41.33 144.67 58.70 115.23 98.12 102.97 158.50 91.88 105.27 243.80 189.23 223.24 143.04 52.56 31.15 19.62 192.70 82.41 86.14 54 ER11a ExonRegion 0 6.45 0.12 7.28 3.87 5.77 11.15 3.08 13.17 6.45 8.10 1.57 1.44 12.41 6.26 5.46 7.90 3.50 4.82 9.90 2.90 12.19 5.27 5.15 55 E11_Ab KnownBoundary 0 7.41 0.00 10.32 7.16 0.00 5.00 1.94 7.93 2.84 4.67 0.00 13.95 0.00 4.59 0.00 0.00 3.93 2.57 0.00 3.26 11.98 5.94 0.00 56 ER11b ExonRegion 0 67.33 12.96 76.41 46.25 50.28 145.33 57.18 113.03 88.31 100.07 150.12 103.19 114.03 201.97 179.82 195.73 152.25 47.89 43.67 28.86 158.39 71.23 65.89 57 E11_Da NovelBoundary 0 3.11 3.35 6.45 1.47 8.32 29.93 8.13 13.88 5.99 1.67 5.26 0.00 6.66 5.36 5.81 27.51 4.77 23.17 12.33 2.56 18.53 0.00 4.35 58 E11a_E12a KnownJunction 0 80.61 39.01 122.50 54.77 79.37 201.13 62.53 123.76 100.84 117.68 146.30 90.63 120.61 207.43 184.93 183.80 132.68 38.01 21.65 32.53 147.65 53.33 85.45 59 ER11c ExonRegion 0 64.42 23.89 100.56 47.10 62.38 165.84 52.63 112.78 97.96 105.66 145.93 104.18 105.82 197.64 165.01 182.23 140.91 38.57 25.88 32.58 133.46 58.47 68.83 60 E12_Aa NovelBoundary 0 2.82 0.00 2.54 9.56 0.00 4.94 0.00 6.45 7.18 5.18 2.53 12.00 0.00 4.94 14.09 20.34 0.00 16.29 4.80 0.00 8.34 0.00 4.35 61 ER12a ExonRegion 0 75.08 31.87 84.93 41.70 54.13 146.44 44.00 98.24 88.76 98.51 144.41 81.84 102.14 219.60 215.61 228.85 146.92 55.08 23.98 24.35 154.68 82.02 74.80 62 E12_Da NovelBoundary 0 7.41 3.22 5.77 3.36 28.01 13.40 6.32 11.71 9.64 4.11 2.26 0.00 0.00 7.30 14.96 7.43 0.00 2.49 4.80 0.00 5.19 5.94 4.35 63 E12a_E13b KnownJunction 0 70.83 26.71 52.69 21.98 66.72 134.30 30.65 84.78 60.10 69.89 130.45 67.52 87.98 173.52 175.54 178.84 113.70 48.33 34.45 20.65 127.88 70.91 64.53 64 E13_Aa NovelBoundary 0 24.52 6.38 15.55 1.63 17.23 9.65 16.78 12.36 11.34 18.62 6.95 12.00 0.00 17.84 4.45 12.39 0.00 17.20 8.75 0.00 0.00 0.00 8.02 65 ER13a ExonRegion 0 8.72 3.62 15.50 6.06 5.45 14.50 6.45 13.10 7.13 7.13 10.78 2.54 3.83 8.49 9.34 16.66 5.30 11.17 4.56 1.33 13.22 7.72 4.04 66 E13_Ab KnownBoundary 0 14.30 3.35 13.28 10.79 0.00 13.06 0.00 23.78 5.93 8.22 14.48 0.00 6.82 16.95 9.39 27.77 4.68 12.39 9.51 0.00 8.77 16.41 11.44 67 ER13b ExonRegion 0 62.66 23.50 68.19 36.86 53.58 129.13 46.03 107.65 75.86 98.45 136.79 48.03 89.98 187.42 177.25 202.24 121.60 66.30 33.85 35.03 166.92 78.79 68.02 68 E13_Da KnownBoundary 0 77.42 36.64 91.42 52.37 70.54 114.76 81.79 115.38 76.71 115.67 125.24 56.12 60.39 176.11 186.17 184.23 141.75 61.27 35.86 38.09 170.44 81.13 56.17 69 ER13c ExonRegion 0 92.71 30.26 89.19 43.92 57.63 126.19 49.14 95.47 76.14 82.12 131.89 64.89 90.34 210.22 164.68 211.72 145.15 51.45 31.85 22.17 156.52 66.84 57.81 70 E13_Db KnownBoundary 0 33.27 8.35 23.21 10.16 15.03 18.28 36.08 27.52 30.01 21.17 11.69 0.00 18.83 19.37 13.35 46.74 16.92 20.02 18.73 8.69 17.17 20.39 23.47 71 E13b_E13c KnownJunction 0 99.57 40.85 75.90 36.69 18.93 107.10 22.43 67.94 56.97 61.08 144.40 38.26 65.74 227.80 167.75 201.91 122.02 31.38 29.84 16.87 135.54 70.60 60.78 72 ER13d ExonRegion 0 29.00 4.83 22.47 9.05 15.75 30.43 24.28 31.93 24.41 21.28 15.56 5.96 12.55 35.43 24.00 36.73 19.60 16.13 10.65 7.07 28.40 11.97 17.59 73 E13_Ac KnownBoundary 0 77.42 22.89 30.16 13.02 16.04 11.30 33.83 56.39 34.92 28.02 23.06 6.30 6.33 39.79 33.38 75.11 23.47 30.47 15.91 6.52 20.51 14.76 19.46 74 ER13e ExonRegion 0 106.94 39.99 119.10 52.80 64.55 134.28 41.21 123.36 92.45 93.31 167.25 63.63 71.25 235.77 193.01 242.75 146.43 59.46 60.70 35.17 186.80 67.42 110.60 75 E13_Dc KnownBoundary 0 28.23 0.00 21.26 10.12 4.33 21.18 13.91 25.92 25.93 21.25 23.01 0.00 7.30 19.78 0.00 22.64 20.20 21.31 8.94 8.44 30.64 6.12 29.36 76 E13c_E14b KnownJunction 0 91.42 25.32 122.08 52.47 81.66 185.01 64.43 132.75 83.74 96.65 177.36 79.68 93.01 213.37 186.04 217.04 144.65 43.90 59.58 44.04 136.28 49.54 58.64 77 ER13f ExonRegion 0 13.31 0.70 11.51 4.81 13.29 17.32 7.57 31.32 19.40 12.62 8.33 7.26 16.43 12.23 11.22 26.73 16.68 12.10 11.69 4.40 20.94 8.01 16.52 78 E13_Dd NovelBoundary 0 27.34 3.03 7.54 14.85 15.20 16.41 30.25 46.82 34.20 21.36 21.95 18.46 20.13 18.78 18.91 31.79 23.19 19.36 40.47 8.44 35.65 19.17 29.02 79 E14_Aa NovelBoundary 0 32.15 6.18 11.71 4.06 7.30 21.29 12.54 53.40 37.47 24.42 16.90 12.60 12.82 19.07 18.17 39.73 29.83 2.28 4.61 14.51 33.24 10.35 12.46 80 ER14a ExonRegion 0 32.91 6.05 11.33 12.04 21.99 25.53 16.98 27.23 21.26 19.07 11.37 8.58 21.98 12.70 13.95 25.32 18.06 9.21 10.56 3.23 27.24 10.92 9.06 81 E14_Ab KnownBoundary 0 35.27 3.35 21.08 10.79 27.59 25.95 17.09 36.68 17.79 20.68 9.69 6.30 27.76 7.06 4.45 19.65 16.74 12.73 4.52 0.00 20.26 15.74 0.00 82 ER14b ExonRegion 0 99.01 25.97 129.33 58.23 76.38 159.34 51.66 135.15 103.63 104.25 167.95 69.36 93.44 234.14 235.68 241.56 161.02 61.01 44.02 36.21 158.54 79.79 88.33 83 E14a_E15a KnownJunction 0 97.42 24.67 107.45 49.88 56.96 134.24 49.37 129.88 91.72 102.91 156.20 49.22 60.87 207.78 220.66 193.54 187.94 50.53 47.25 42.31 153.95 87.38 87.92 84 ER15a ExonRegion 0 85.98 27.94 120.17 45.38 59.38 128.08 34.88 134.46 100.22 107.84 138.80 60.11 44.05 192.16 243.97 202.74 154.18 54.58 38.42 40.43 144.60 73.26 65.01 85 E15a_E16a KnownJunction 1 129.06 38.15 155.41 82.61 57.89 175.81 43.15 166.68 107.09 140.60 225.53 63.92 53.57 240.45 308.30 233.44 160.26 102.06 43.11 42.76 151.97 103.18 78.62 86 ER16a ExonRegion 0 141.47 27.58 123.40 60.71 49.48 173.84 51.90 140.07 107.88 124.36 190.20 89.53 79.23 252.78 296.31 221.13 184.41 65.41 37.12 35.38 150.06 68.37 94.01 87 E16a_E17a KnownJunction 0 154.62 29.67 120.01 49.18 52.38 158.55 43.77 127.04 120.14 112.28 127.08 82.68 79.22 205.78 286.05 186.36 167.46 25.08 30.78 34.71 102.18 68.40 81.01 88 ER17a ExonRegion 0 105.52 15.72 125.38 57.62 41.74 140.11 42.95 118.40 95.33 105.00 129.15 54.22 73.21 219.99 247.14 198.95 152.65 47.50 30.42 40.37 142.35 69.06 75.49 89 E17a_E18a KnownJunction 0 91.65 26.31 142.48 75.81 57.47 185.63 78.17 136.41 92.13 120.99 172.89 99.18 53.89 190.65 250.82 212.25 178.59 81.08 29.93 39.18 145.42 84.69 55.83 90 ER18a ExonRegion 0 88.86 20.87 127.30 50.31 41.21 164.66 49.61 99.51 90.90 102.23 159.44 63.86 52.89 162.73 248.82 185.47 159.96 62.85 18.14 29.52 144.86 72.00 62.24 91 E18a_E19a KnownJunction 0 83.79 23.61 145.20 42.95 37.95 113.46 42.79 99.03 108.88 99.90 149.77 40.06 79.54 205.19 278.51 153.12 184.20 54.14 12.52 27.93 178.60 69.50 49.43 92 ER19a ExonRegion 0 257.29 38.21 149.00 70.62 73.50 188.01 66.41 162.29 127.76 128.61 183.83 100.70 162.60 233.77 323.85 266.78 183.40 60.82 43.15 41.75 185.75 103.05 100.86 93 ER19b ExonRegion 0 4.23 0.00 1.23 1.53 8.36 4.36 6.79 1.51 0.00 0.72 0.24 0.00 4.69 1.02 1.45 0.00 0.83 1.62 0.00 2.13 0.55 0.00 0.00