Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CDKN2C Gene 0 26.35 12.00 6.17 24.60 55.11 92.03 116.24 53.49 16.15 77.60 10.22 16.59 7.76 132.04 121.17 85.20 89.45 38.16 4.70 50.42 13.48 16.49 11.15 2 262662 Transcript 0 0.27 0.05 0.08 0.27 0.54 1.61 1.55 2.99 1.54 1.54 0.09 0.20 0.17 2.82 4.35 0.97 1.27 0.44 0.21 1.47 0.20 0.55 0.04 3 396148 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 371761 Transcript 0 40.65 4.72 2.73 12.93 41.08 91.24 60.31 23.45 5.98 22.62 1.80 6.56 2.28 47.46 65.53 27.79 47.45 13.80 1.62 29.99 14.70 10.34 7.34 5 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.49 1.19 0.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.02 0.00 0.00 0.00 6 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 1.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER2a ExonRegion 0 0.82 0.14 0.25 0.82 1.61 4.83 4.66 5.19 2.00 4.50 0.26 0.59 0.52 8.45 13.06 2.90 3.81 1.31 0.64 2.40 0.59 1.66 0.11 8 E2_Ab KnownBoundary 0 3.26 0.00 0.00 0.00 0.00 62.35 26.19 18.15 1.36 13.43 0.00 6.30 0.00 4.30 19.28 3.59 8.23 0.00 0.00 0.00 0.00 2.33 4.35 9 ER2b ExonRegion 0 10.87 7.13 3.68 9.46 27.03 59.36 83.93 46.62 12.21 71.40 10.61 8.75 5.30 134.02 83.03 88.23 98.58 39.75 4.58 48.03 8.40 11.09 9.55 10 E2_Da NovelBoundary 0 0.00 2.89 3.08 5.66 3.74 16.18 24.16 23.21 1.42 29.74 10.37 0.00 0.00 39.20 64.53 20.68 25.53 20.06 0.00 30.04 3.15 0.00 0.00 11 E2a_E3b KnownJunction 0 27.93 16.71 16.26 33.93 122.07 126.97 250.45 102.97 28.10 120.69 37.69 11.40 13.64 258.17 224.24 163.46 202.15 87.09 11.86 122.66 13.34 16.72 27.74 12 E3_Aa NovelBoundary 0 2.82 3.09 0.00 5.53 15.70 16.87 28.66 14.17 6.39 22.51 4.37 0.00 0.00 50.62 9.39 30.25 62.37 35.82 0.00 36.43 3.15 10.16 0.00 13 ER3a ExonRegion 0 40.65 4.72 2.73 12.93 41.08 91.24 60.31 23.45 5.98 22.62 1.80 6.56 2.28 47.46 65.53 27.79 47.45 13.80 1.62 29.99 14.70 10.34 7.34 14 E3_Ab KnownBoundary 1 35.27 3.09 0.00 27.64 39.22 72.57 64.74 37.13 11.20 21.81 0.00 40.06 13.47 34.73 33.50 19.48 19.17 10.82 0.00 35.41 28.05 8.02 7.77 15 ER3b ExonRegion 0 55.44 47.24 23.61 92.90 260.49 292.71 445.24 191.92 58.40 274.22 42.64 53.32 25.20 484.98 466.48 327.21 336.95 140.23 20.53 188.76 65.13 78.33 39.95 16 E3a_E4a KnownJunction 0 127.21 72.36 22.59 157.69 509.51 373.59 516.35 249.85 69.94 329.73 62.59 62.27 27.43 451.71 548.98 379.73 303.13 202.21 4.24 213.23 69.44 93.81 78.96 17 Ix Intron 0 5.44 4.20 1.33 6.85 15.13 10.90 39.94 10.26 2.38 9.30 1.70 15.18 4.98 14.22 9.49 8.99 8.03 0.94 0.29 7.73 0.03 1.58 0.67 18 Ix_SR1 SilentIntronRegion 0 6.81 2.81 1.74 5.13 14.26 12.26 39.71 9.80 3.02 8.60 2.48 15.53 2.30 19.94 8.11 16.54 13.45 1.90 0.43 8.12 0.19 2.87 1.67 19 Ix_AR1 ActiveIntronRegion 0 2.14 1.53 0.33 2.97 9.00 8.32 32.57 4.53 1.90 5.93 2.20 12.43 0.56 13.68 3.26 8.60 9.45 0.78 0.13 5.66 0.00 0.79 0.94 20 Ix_SR2 SilentIntronRegion 0 3.88 5.00 1.29 7.48 15.54 10.18 44.03 10.49 2.33 9.73 1.16 16.02 7.54 13.48 9.43 6.38 5.63 0.79 0.45 8.27 0.00 1.66 0.42 21 Ix_AR2 ActiveIntronRegion 0 5.63 4.62 0.26 9.85 18.31 16.05 36.23 14.82 2.63 15.10 2.18 14.40 6.44 11.19 14.96 5.83 4.56 0.52 0.00 6.27 0.00 1.02 0.00 22 Ix_AR3 ActiveIntronRegion 0 5.44 2.03 0.00 7.20 13.38 12.84 45.01 12.10 0.00 14.91 0.00 49.48 12.73 9.28 17.41 8.92 8.02 1.85 0.00 4.26 0.00 0.00 0.00 23 Ix_SR3 SilentIntronRegion 0 13.26 6.71 3.21 9.69 20.43 10.31 38.93 13.76 2.09 8.01 1.47 15.23 4.30 12.15 14.95 10.64 9.85 0.65 0.00 9.47 0.00 1.05 0.37 24 E4_Aa NovelBoundary 0 21.04 0.00 1.33 6.53 27.50 13.06 28.26 14.66 0.00 5.53 0.00 0.00 0.00 11.42 0.00 7.78 13.46 0.00 0.00 9.52 0.00 0.00 4.35 25 ER4a ExonRegion 0 72.14 33.90 17.20 77.07 143.91 227.71 291.58 121.46 40.09 181.04 21.42 50.95 21.79 275.11 300.46 176.04 163.16 78.90 9.12 103.39 28.54 37.43 25.24 26 E4_Da KnownBoundary 0 22.00 0.00 0.00 1.66 15.87 0.00 0.00 1.68 1.53 2.44 2.68 6.15 0.00 2.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER4b ExonRegion 0 14.67 0.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00