Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PTCH2 Gene 0 18.74 5.30 18.74 5.31 7.42 15.64 4.66 16.08 22.64 8.11 1.61 1.38 0.84 2.44 2.99 2.06 1.18 7.30 9.24 7.10 5.17 5.24 6.57 2 372192 Transcript 0 19.02 4.88 12.96 4.90 7.45 12.84 4.37 11.13 18.00 7.23 1.47 0.47 1.14 1.07 3.01 1.86 1.16 3.51 8.10 5.33 4.11 5.04 6.19 3 447098 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 438067 Transcript 0 1.79 0.25 1.65 0.74 1.29 1.22 0.72 1.40 0.67 0.52 0.12 4.41 0.23 0.16 0.12 0.18 0.00 0.33 0.58 0.26 3.72 2.39 9.32 5 372194 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 2.91 0.00 1.08 0.00 3.85 5.13 1.90 1.31 7.57 3.05 0.00 0.00 0.00 0.36 0.95 1.90 1.32 0.13 2.21 0.85 2.36 1.66 3.51 7 E1_Ab KnownBoundary 0 3.63 0.00 7.86 0.00 4.07 15.96 7.68 2.09 7.18 8.52 0.00 0.00 0.00 2.47 0.00 8.20 0.00 0.00 4.80 0.00 8.65 0.00 0.00 8 ER1b ExonRegion 0 1.19 2.77 4.38 0.00 2.53 19.81 3.05 2.17 7.36 2.48 0.00 0.00 0.00 2.12 1.39 4.83 0.00 2.98 4.88 0.09 3.47 2.81 0.00 9 E1_Da NovelBoundary 0 6.96 6.18 12.30 0.00 0.00 8.23 4.06 10.19 13.89 1.21 0.00 0.00 0.00 2.47 0.00 4.36 9.16 3.90 8.85 0.00 0.00 0.00 0.00 10 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 5.39 0.00 4.15 3.24 1.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 I1 Intron 0 8.18 3.40 13.93 2.76 5.03 8.05 3.46 8.61 12.70 6.61 0.40 0.75 0.00 2.30 1.93 2.80 1.03 2.88 6.99 5.78 2.76 2.18 3.07 12 I1_SR1 SilentIntronRegion 0 8.22 3.41 13.99 2.77 5.05 8.08 3.47 8.65 12.75 6.64 0.41 0.75 0.00 2.31 1.93 2.81 1.04 2.89 7.02 5.81 2.78 2.19 3.08 13 E2_Aa NovelBoundary 0 26.75 5.39 32.55 5.59 7.47 2.90 5.83 13.14 20.72 12.79 0.00 6.30 0.00 0.00 0.00 4.10 4.68 13.18 0.00 6.07 0.00 6.00 0.00 14 ER2a ExonRegion 0 20.16 7.81 17.71 6.44 12.21 16.70 13.58 18.14 21.10 5.79 2.04 0.00 2.04 2.06 1.85 1.57 0.87 10.03 8.65 10.66 7.55 1.11 5.78 15 E2_Da NovelBoundary 0 13.26 0.00 11.47 5.53 15.79 2.90 7.29 2.09 4.02 1.53 0.00 6.30 0.00 0.00 0.00 0.00 0.00 6.67 0.00 6.14 7.78 3.12 0.00 16 E2a_E3a KnownJunction 0 14.45 2.83 4.61 0.00 24.19 20.44 3.71 12.36 21.30 3.30 0.00 0.00 0.00 4.53 0.00 0.00 0.00 6.96 8.85 5.43 0.00 0.00 4.35 17 I2 Intron 0 14.41 4.21 7.26 1.94 5.71 4.15 4.79 5.92 5.71 3.19 0.56 0.76 1.38 0.46 1.58 0.87 0.92 3.58 5.95 6.76 2.60 1.93 2.87 18 I2_SR1 SilentIntronRegion 0 14.02 4.22 7.91 2.06 5.90 3.99 5.12 5.29 5.37 2.86 0.53 0.63 1.22 0.33 1.82 0.79 0.98 3.12 5.60 6.54 2.46 1.49 3.01 19 I2_AR1 ActiveIntronRegion 0 21.56 6.93 4.68 2.53 6.03 3.54 3.53 9.39 5.96 4.65 0.92 0.00 2.15 1.41 0.84 1.57 0.82 6.45 8.51 10.91 1.77 3.76 1.27 20 I2_SR2 SilentIntronRegion 0 12.16 2.53 5.39 0.90 4.53 5.38 3.82 7.19 7.39 4.10 0.52 1.90 1.79 0.57 0.76 0.86 0.66 4.31 6.28 5.38 3.92 3.18 3.13 21 E3_Aa NovelBoundary 0 3.48 0.00 6.50 4.13 0.00 5.34 0.00 4.52 6.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.71 11.95 11.80 0.00 0.00 22 ER3a ExonRegion 0 19.95 7.95 21.57 4.68 10.66 15.59 5.97 17.28 29.62 9.10 1.01 1.91 0.00 3.38 4.72 2.39 1.77 12.71 11.74 8.95 3.55 6.21 7.67 23 E3a_E4a KnownJunction 0 31.26 8.95 21.73 2.06 0.00 0.00 9.32 20.00 33.68 10.31 0.00 0.00 0.00 2.47 0.00 0.00 0.00 2.16 0.00 6.20 0.00 0.00 3.41 24 ER4a ExonRegion 0 23.13 7.61 18.91 2.55 20.41 25.28 9.61 23.46 35.02 11.75 2.71 0.00 0.00 2.23 0.00 5.18 0.00 5.52 14.97 7.39 2.80 6.40 4.99 25 E4a_E5a KnownJunction 0 64.01 20.65 23.27 5.96 30.31 54.06 19.74 22.76 46.01 14.32 0.00 0.00 0.00 2.47 0.00 11.19 0.00 16.29 42.64 22.75 8.03 23.02 10.84 26 ER5a ExonRegion 0 23.30 7.63 14.22 4.90 10.21 25.17 7.63 15.76 27.82 6.31 1.39 0.00 0.00 2.63 3.41 2.65 0.00 10.58 20.74 12.93 3.40 12.52 5.59 27 E5a_E6a KnownJunction 0 9.63 0.00 9.67 1.86 7.56 4.83 0.00 13.97 16.75 4.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.95 6.01 3.15 2.51 0.00 28 ER6a ExonRegion 0 6.39 4.70 12.55 1.52 6.02 10.04 3.11 11.72 21.66 7.04 0.42 0.00 0.00 1.07 1.98 0.00 0.00 3.88 12.14 8.94 5.68 6.42 3.10 29 E6a_E7a KnownJunction 0 10.15 9.01 17.33 3.26 0.00 13.29 2.21 17.99 26.62 13.16 0.00 0.00 0.00 0.00 4.45 0.00 0.00 10.32 3.95 3.26 3.15 0.00 0.00 30 ER7a ExonRegion 0 24.55 5.00 15.20 3.38 5.88 14.20 6.58 13.97 22.75 10.21 0.00 0.00 0.00 1.48 2.19 1.07 2.44 4.07 7.31 8.77 7.01 7.92 0.26 31 E7a_E8a KnownJunction 0 27.56 5.46 16.32 9.92 6.88 5.68 0.00 22.43 25.61 19.31 0.00 0.00 0.00 2.47 4.45 3.25 4.02 6.34 8.09 12.34 0.00 15.06 3.33 32 ER8a ExonRegion 0 15.23 7.17 14.23 5.09 7.58 11.97 4.79 20.04 25.57 9.98 0.67 0.00 0.00 3.76 4.33 4.14 1.41 7.05 4.84 10.51 6.06 4.39 1.81 33 E8_Da NovelBoundary 0 9.63 0.00 8.57 1.56 4.16 2.27 0.00 12.53 9.29 4.46 0.00 5.55 0.00 0.00 0.00 0.00 0.00 2.57 17.60 0.00 0.00 0.00 0.00 34 E8a_E9a KnownJunction 0 16.67 0.00 18.27 5.69 4.16 2.73 4.42 8.42 18.11 9.89 0.00 0.00 0.00 2.47 0.00 0.00 0.00 4.64 4.14 12.27 0.00 2.57 0.00 35 ER9a ExonRegion 0 19.05 6.30 16.73 5.47 5.05 15.80 5.65 17.08 27.55 9.13 1.82 0.00 0.00 4.59 5.21 1.22 0.00 4.82 6.47 11.64 1.70 4.70 5.65 36 E9_Da NovelBoundary 0 13.41 6.45 9.28 1.40 6.79 5.00 0.00 6.82 10.79 6.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.09 5.11 3.03 0.00 0.00 37 E9a_E10a KnownJunction 0 13.04 2.43 7.60 7.26 4.33 9.31 3.71 9.04 14.76 4.67 6.79 0.00 0.00 4.89 0.00 0.00 0.00 6.76 0.00 13.10 0.00 0.00 0.00 38 E10_Aa NovelBoundary 0 0.00 9.47 9.70 0.00 0.00 0.00 0.00 1.56 16.44 4.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.59 0.00 0.00 0.00 5.82 0.00 39 ER10a ExonRegion 0 14.73 1.79 12.40 2.79 5.32 7.16 4.14 14.25 19.86 3.75 1.25 1.17 0.00 1.49 2.01 2.21 1.08 5.85 12.23 5.41 3.81 3.39 3.50 40 E10_Da NovelBoundary 0 13.78 0.00 1.77 0.00 8.66 16.07 0.00 6.08 15.19 0.00 2.58 0.00 0.00 2.12 0.00 0.00 0.00 12.02 0.00 3.26 0.00 2.63 0.00 41 E10a_E11a KnownJunction 0 16.89 5.85 11.89 3.73 6.88 22.32 0.00 10.72 14.79 3.06 2.53 0.00 0.00 7.18 0.00 11.79 0.00 6.88 8.56 5.88 7.97 6.25 4.10 42 E11_Aa NovelBoundary 0 10.45 2.76 9.55 5.93 0.00 4.66 7.95 3.94 4.08 8.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.23 14.40 5.37 0.00 0.00 15.71 43 ER11a ExonRegion 0 21.17 10.89 15.42 6.05 6.53 35.30 1.14 17.23 26.30 3.65 4.49 0.00 1.51 5.92 2.06 2.88 1.81 9.28 9.93 12.72 5.66 13.44 12.38 44 E11_Da NovelBoundary 0 0.00 6.12 13.60 5.23 0.00 8.46 2.21 4.11 15.22 5.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.80 0.00 5.88 0.00 8.02 0.00 45 E11a_E12a KnownJunction 0 10.45 9.21 10.38 6.93 0.00 35.43 3.80 12.61 28.62 7.36 2.58 0.00 6.82 2.47 4.45 0.00 0.00 10.69 4.80 3.07 8.71 2.82 4.01 46 E12_Aa NovelBoundary 0 2.96 0.00 9.99 0.00 11.63 20.27 0.00 8.63 15.77 11.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.25 0.00 0.00 7.72 0.00 4.27 47 ER12a ExonRegion 0 13.59 8.42 21.48 8.49 9.03 17.54 3.98 15.12 30.66 9.98 1.84 0.00 0.56 3.80 2.97 3.61 1.34 11.20 11.12 5.79 7.05 8.12 5.59 48 E12a_E13a KnownJunction 0 21.63 3.03 17.98 5.43 8.15 7.67 0.00 10.56 17.74 8.97 0.00 0.00 0.00 7.00 0.00 0.00 0.00 7.96 12.52 8.88 5.31 10.16 3.84 49 ER13a ExonRegion 0 11.70 3.37 21.63 8.04 10.10 13.39 4.03 20.02 24.73 10.38 2.37 1.46 4.61 6.16 2.17 2.15 2.41 8.84 20.21 13.18 6.72 12.06 13.20 50 E13_Da NovelBoundary 0 10.52 0.00 4.14 0.00 0.00 0.00 0.00 2.26 8.25 1.58 0.00 0.00 0.00 0.00 0.00 3.50 0.00 2.57 3.58 3.00 0.00 3.12 0.00 51 E13a_E14a KnownJunction 0 28.82 3.35 17.42 9.49 20.46 23.05 6.14 22.71 22.28 18.35 4.74 0.00 0.00 0.00 5.19 7.69 4.30 14.88 9.22 6.33 0.00 8.70 7.09 52 ER14a ExonRegion 0 23.06 7.31 24.87 6.96 11.16 20.08 4.15 22.91 37.26 18.36 2.89 1.44 1.25 2.85 5.36 4.48 2.55 19.74 14.58 10.76 6.25 6.63 4.50 53 E14a_E15a KnownJunction 0 31.41 5.66 20.11 1.93 12.65 16.07 10.60 27.31 23.87 12.41 0.00 0.00 0.00 2.47 9.64 0.00 0.00 19.52 8.56 8.25 8.15 5.88 0.00 54 ER15a ExonRegion 0 18.07 2.60 20.42 5.13 7.47 17.93 3.98 25.32 30.51 8.54 0.60 0.00 1.39 4.19 3.82 2.01 1.08 9.95 8.23 5.95 6.02 3.44 1.47 55 E15a_E16a KnownJunction 0 23.19 0.00 21.82 9.02 0.00 49.40 0.00 15.03 34.20 9.19 0.00 0.00 0.00 7.00 10.75 8.29 0.00 11.36 8.38 8.63 2.47 2.33 0.00 56 ER16a ExonRegion 0 20.65 4.81 32.43 6.95 9.52 24.99 5.93 21.00 18.89 10.31 1.24 0.00 0.98 2.91 3.83 3.16 2.15 7.30 12.54 5.48 3.37 3.82 5.83 57 E16a_E17a KnownJunction 0 6.37 3.35 25.99 1.83 16.30 14.20 3.71 23.58 26.97 10.29 5.05 0.00 6.82 2.18 0.00 3.25 3.37 10.82 0.00 6.26 5.50 0.00 4.18 58 ER17a ExonRegion 0 31.68 4.72 43.35 5.04 14.06 30.70 4.67 33.73 35.46 17.65 4.91 2.56 0.54 4.10 3.98 4.35 2.95 13.58 11.67 6.08 5.58 5.43 8.99 59 E17a_E18a KnownJunction 0 28.30 9.41 32.23 3.53 24.62 17.04 11.92 31.01 33.28 13.22 5.37 12.30 0.00 2.35 9.02 4.10 0.00 11.81 13.18 0.00 3.15 2.63 4.27 60 E18_Aa NovelBoundary 0 10.00 0.00 10.08 0.00 0.00 17.55 6.45 4.85 1.79 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.70 0.00 0.00 0.00 0.00 0.00 61 ER18a ExonRegion 0 20.48 6.63 27.01 3.74 6.59 17.78 3.89 18.28 30.57 7.70 1.72 1.69 0.55 3.46 3.39 3.60 2.35 8.48 9.20 8.88 5.31 4.08 7.04 62 E18_Da NovelBoundary 0 13.93 0.00 0.00 0.00 0.00 2.90 0.00 3.45 1.07 0.00 0.00 0.00 0.00 2.65 0.00 0.00 0.00 3.98 0.00 0.00 5.81 0.00 0.00 63 E18a_E19a KnownJunction 0 24.82 2.63 43.17 5.39 0.00 15.62 6.23 17.99 37.96 11.20 7.05 7.65 0.00 4.83 4.45 4.19 0.00 4.39 0.00 29.27 9.14 10.53 3.84 64 ER19a ExonRegion 0 31.92 6.82 37.34 6.00 4.73 26.80 8.37 29.25 38.07 8.21 0.91 1.76 0.00 6.10 2.71 1.10 2.22 5.54 8.26 10.84 5.72 3.61 8.38 65 E19a_E20a KnownJunction 0 32.67 6.64 48.67 7.59 3.65 34.13 5.87 24.48 40.10 1.26 0.00 0.00 0.00 2.47 0.00 0.00 4.11 8.62 13.46 8.56 5.62 2.76 7.68 66 ER20a ExonRegion 0 18.02 9.13 40.61 17.22 5.50 25.12 5.55 20.37 30.60 6.98 3.48 0.65 0.00 2.90 3.45 0.00 0.76 10.73 11.81 10.10 8.15 4.55 5.69 67 E20a_E21a KnownJunction 0 47.93 9.54 31.22 6.93 7.13 24.47 0.00 12.69 30.70 7.47 2.21 0.00 0.00 2.24 8.90 0.00 4.58 12.31 27.11 2.75 2.78 10.53 4.35 68 ER20b ExonRegion 0 27.51 8.13 30.63 9.54 8.03 20.17 1.32 17.28 25.94 5.73 1.93 4.33 0.00 1.62 8.70 0.00 3.30 11.09 22.30 8.51 8.81 8.33 2.94 69 ER20c ExonRegion 0 32.67 5.85 31.17 9.54 6.86 18.11 1.49 14.80 28.02 6.67 1.93 4.33 0.00 1.93 8.70 0.00 3.30 10.39 18.71 7.85 5.65 7.81 4.04 70 ER21a ExonRegion 0 43.52 5.73 27.98 15.29 7.41 16.41 4.36 20.17 28.68 12.21 2.24 0.00 1.83 1.84 4.85 0.98 0.76 10.14 10.80 4.98 7.05 4.56 9.46 71 E21a_E22a KnownJunction 0 60.01 9.34 32.38 9.09 6.71 23.79 8.88 19.76 26.24 15.04 7.21 0.00 0.00 0.00 8.90 8.12 0.00 4.48 9.13 2.49 6.12 2.94 0.00 72 ER22a ExonRegion 0 51.01 5.32 26.90 7.60 7.36 29.56 10.55 14.69 18.53 12.80 2.81 0.00 0.21 2.63 4.01 3.02 2.28 5.16 8.57 8.45 9.98 3.68 5.27 73 E22_Da KnownBoundary 0 78.68 0.00 32.82 12.52 11.21 43.21 5.96 20.00 20.11 8.60 2.26 0.00 0.00 2.47 4.45 0.00 0.00 7.79 13.08 3.07 8.53 5.39 8.62 74 E22a_E23a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75 E22a_E24a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 76 ER22b ExonRegion 0 35.13 9.77 24.83 9.80 11.05 20.56 6.84 20.95 28.44 11.42 2.95 0.93 2.27 1.79 5.07 1.81 1.00 6.89 13.99 9.81 5.86 8.42 8.87 77 ER23a ExonRegion 0 0.00 0.00 0.00 0.00 2.17 0.00 1.07 0.00 0.00 0.00 0.00 3.50 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 1.78 3.37 11.98 78 E23a_E24a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79 E24_Aa NovelBoundary 0 2.89 0.00 1.66 0.00 0.00 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.62 3.12 11.61 80 ER24a ExonRegion 0 0.00 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.49 81 ER24b ExonRegion 0 1.79 0.25 1.65 0.74 1.29 1.22 0.72 1.40 0.67 0.52 0.12 4.41 0.23 0.16 0.12 0.18 0.00 0.33 0.58 0.26 3.72 2.39 9.32 82 IG23 Intergenic 0 11.75 0.87 6.79 5.82 11.26 3.80 4.12 6.44 3.26 3.86 1.53 69.72 2.17 2.12 3.27 3.08 3.62 0.62 0.97 0.39 24.59 77.27 75.77 83 IG23_AR2 ActiveIntergenicRegion 0 17.27 0.59 8.78 7.69 7.02 3.21 3.86 7.88 3.75 2.74 1.41 30.88 0.00 1.17 3.33 2.17 3.85 1.07 1.39 0.31 26.64 78.63 71.87 84 IG23_SR1 SilentIntergenicRegion 0 8.09 1.11 5.58 4.66 14.90 4.41 4.48 5.63 3.02 4.85 1.69 101.66 3.89 2.92 3.35 3.89 3.60 0.30 0.70 0.46 24.05 79.39 81.77