Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 B4GALT2 Gene 0 22.29 41.95 220.32 52.97 41.36 176.45 50.40 108.03 72.35 138.94 85.69 32.09 44.71 106.88 84.25 51.72 57.84 106.49 56.16 66.80 143.29 81.68 77.42 2 498543 Transcript 0 0.00 1.64 0.00 0.00 0.48 0.33 0.00 0.00 0.04 0.02 0.01 0.00 0.00 0.00 0.02 0.05 0.00 0.07 0.00 0.38 0.00 1.13 0.53 3 372324 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 2.97 0.00 0.95 0.00 0.00 4 497866 Transcript 0 0.00 0.00 10.11 1.92 0.04 8.25 1.74 1.46 4.87 22.46 11.78 0.16 11.04 25.14 7.45 6.97 8.77 16.67 4.58 7.33 15.67 8.95 4.46 5 434555 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 356836 Transcript 0 4.29 2.04 19.65 2.73 5.19 10.16 4.48 7.02 6.38 8.01 3.74 9.84 11.35 13.58 12.04 8.93 10.90 19.51 9.19 3.75 9.55 6.33 7.13 7 309519 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 485678 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 481924 Transcript 0 6.43 2.13 13.70 3.23 6.07 23.51 6.15 9.47 4.79 8.16 16.86 18.49 26.41 47.56 34.80 19.03 22.74 11.48 10.65 6.37 20.27 14.80 14.77 10 ER1a ExonRegion 0 0.00 0.00 0.01 0.00 0.97 0.66 0.00 0.00 0.08 0.05 0.01 0.00 0.00 0.00 0.04 0.11 0.00 0.14 0.00 0.77 0.00 2.26 1.06 11 E1a_E4a KnownJunction 0 0.00 3.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.26 0.00 0.00 0.00 0.00 2.97 0.00 0.95 0.00 0.00 13 E2_Ab KnownBoundary 0 0.00 0.00 1.18 0.00 0.00 0.00 0.00 3.37 0.00 1.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.95 0.00 5.56 0.00 0.00 14 ER2b ExonRegion 0 0.30 0.15 3.47 0.05 0.00 10.38 0.56 3.76 2.87 7.67 7.02 0.85 1.79 5.86 7.55 2.36 3.72 8.15 2.40 4.53 11.71 4.16 3.94 15 E2_Ac KnownBoundary 0 3.78 5.66 36.49 9.09 4.07 66.44 5.48 37.87 25.38 60.17 33.43 12.45 6.33 56.15 29.30 11.62 20.48 83.98 20.61 35.41 48.93 31.54 32.35 16 ER2c ExonRegion 0 0.65 13.42 87.39 8.89 3.10 47.39 8.26 55.96 31.73 68.57 51.18 13.05 12.44 80.97 65.68 37.25 32.30 122.12 42.73 35.29 100.28 50.70 46.99 17 E2_Da KnownBoundary 0 2.89 0.00 6.03 0.00 0.00 2.90 0.00 0.00 1.79 12.20 2.68 5.85 20.29 7.18 4.45 4.36 3.37 5.14 0.00 0.00 2.66 3.00 0.00 18 E2a_E4a KnownJunction 0 0.00 5.20 161.94 30.90 7.98 61.78 22.43 69.17 48.44 101.70 63.86 17.86 46.10 82.64 64.53 53.66 46.47 140.15 40.47 37.84 96.87 72.38 72.22 19 ER2d ExonRegion 0 0.00 0.00 7.87 0.27 0.08 6.04 1.85 2.91 2.96 15.34 10.92 0.33 7.64 21.38 6.00 6.60 5.75 11.16 9.16 7.25 13.85 6.21 5.34 20 E2b_E4a KnownJunction 0 0.00 0.00 12.36 3.56 0.00 10.45 1.63 0.00 6.77 29.58 12.63 0.00 14.45 28.90 8.90 7.35 11.78 22.18 0.00 7.41 17.48 11.70 3.59 21 ER3a ExonRegion 1 5.48 4.47 16.98 1.44 5.86 12.86 5.14 5.53 5.88 5.18 5.14 1.46 16.90 8.00 9.17 11.41 6.19 8.97 2.27 4.08 12.22 4.69 8.81 22 E3_Ab KnownBoundary 0 0.00 2.57 40.60 7.29 3.23 6.93 2.25 14.87 18.72 7.60 0.00 0.00 6.01 9.30 8.78 13.84 3.93 14.09 3.48 5.43 18.10 0.00 3.24 23 ER3b ExonRegion 0 1.76 2.03 42.48 8.18 2.68 4.58 1.99 15.56 15.44 8.60 1.93 4.33 8.60 7.58 8.70 12.38 0.00 7.39 4.78 5.67 18.73 0.35 0.00 24 E3_Da KnownBoundary 0 3.78 0.00 32.55 9.92 7.81 8.06 1.90 8.91 8.25 6.98 4.53 0.00 13.15 9.48 19.53 0.00 8.70 13.14 23.53 0.00 5.31 6.18 4.10 25 E3a_E4a KnownJunction 1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 20.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER3c ExonRegion 1 1.74 0.07 42.49 9.20 3.15 3.60 1.70 12.04 13.90 9.95 3.11 4.33 19.26 7.71 12.12 1.70 4.48 7.59 7.85 2.51 11.02 3.50 0.42 27 ER3d ExonRegion 0 3.62 1.64 33.92 6.75 5.38 14.72 8.29 11.11 7.21 11.48 6.06 7.81 10.34 18.91 12.86 11.04 10.70 29.41 11.65 3.91 11.17 8.73 9.25 28 E3_Db NovelBoundary 0 10.89 6.18 14.81 3.36 4.07 2.78 6.32 11.09 2.78 1.32 0.00 6.30 13.64 2.47 0.00 0.00 4.77 6.96 11.77 5.69 2.41 0.00 0.00 29 E3b_E4a KnownJunction 1 3.78 0.00 8.04 0.00 4.33 2.90 0.00 4.44 6.05 7.36 0.00 20.26 6.82 13.83 14.09 4.36 15.80 20.15 13.65 3.26 5.25 5.57 3.33 30 ER4a ExonRegion 0 10.39 25.27 285.09 46.06 21.55 151.01 36.70 145.05 112.85 253.57 166.23 52.03 77.40 185.30 137.96 77.75 121.06 206.86 79.26 97.84 279.06 118.22 104.62 31 E4_Da KnownBoundary 0 16.00 21.51 336.92 61.43 51.78 250.08 40.98 154.07 123.84 293.74 181.57 59.42 58.28 185.71 103.96 56.91 123.42 259.83 64.19 120.74 279.67 116.59 100.56 32 ER4b ExonRegion 0 16.08 36.41 288.71 57.82 33.06 190.66 46.96 128.13 79.74 239.35 145.46 59.04 97.27 182.21 167.38 98.87 95.34 254.55 87.47 119.96 236.57 125.43 138.85 33 E4b_E5a KnownJunction 0 30.45 48.28 406.05 87.40 75.64 347.02 77.51 227.22 134.08 314.50 260.01 60.32 66.72 237.63 223.25 95.53 152.13 291.67 80.47 200.44 289.61 140.04 180.29 34 E4b_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER5a ExonRegion 0 23.05 42.48 322.60 61.21 62.26 303.03 73.85 184.83 108.44 255.73 221.55 45.89 85.78 196.99 149.58 79.19 142.89 238.32 80.91 171.35 327.13 88.62 128.62 36 E5_Ab KnownBoundary 1 24.23 63.28 334.49 67.46 75.55 389.09 101.00 188.00 110.01 241.57 202.95 47.87 114.44 235.80 102.23 61.10 137.45 177.38 63.53 185.30 351.51 83.58 108.84 37 ER5b ExonRegion 0 31.44 81.57 393.37 86.08 55.92 291.24 81.91 195.90 145.66 283.98 172.69 53.14 96.20 217.05 178.82 97.89 115.69 224.03 106.94 153.16 285.79 150.47 173.28 38 E5b_E6a KnownJunction 0 90.24 163.39 513.76 103.95 75.98 407.44 110.10 264.23 189.09 308.13 240.32 42.91 81.00 247.57 156.25 104.84 135.39 171.95 104.85 174.11 383.58 213.58 124.80 39 ER5c ExonRegion 0 59.26 134.22 444.81 91.31 58.87 368.59 103.27 210.87 163.04 262.64 231.95 38.97 70.35 209.51 162.47 86.19 112.23 177.38 101.93 153.19 343.78 187.52 114.53 40 ER6a ExonRegion 0 63.10 140.00 490.57 112.06 115.56 495.15 151.27 230.99 168.60 294.02 177.58 66.89 99.57 226.73 176.08 114.12 125.76 220.05 122.39 160.31 309.68 193.08 152.98 41 E6a_E7a KnownJunction 0 84.83 100.64 812.51 210.50 154.58 531.57 183.81 344.78 230.52 425.57 217.32 91.08 99.67 333.57 232.28 157.65 173.16 328.31 188.99 267.75 391.11 278.25 285.28 42 ER7a ExonRegion 0 59.02 115.21 767.63 180.91 120.76 527.64 146.96 306.96 208.47 390.47 239.73 80.98 126.52 292.70 207.11 139.84 187.45 263.15 142.53 194.87 390.06 233.18 187.30 43 E7b_E8a KnownJunction 0 126.54 187.14 787.32 183.23 211.71 714.47 212.47 366.63 222.68 416.74 249.85 140.00 200.47 301.78 137.22 161.67 205.24 365.20 187.02 242.69 434.42 278.25 252.25 44 ER7b ExonRegion 0 80.43 166.75 781.79 207.16 171.25 636.33 181.38 369.89 226.03 422.06 231.95 142.87 164.15 272.85 162.47 163.47 191.45 388.03 162.45 238.30 434.13 250.02 229.06 45 E8_Aa NovelBoundary 0 3.70 0.00 11.47 7.16 3.57 26.06 5.39 13.06 8.83 6.82 2.68 18.16 8.12 2.47 10.75 0.00 0.00 6.09 4.80 4.99 5.00 0.00 3.84 46 ER8a ExonRegion 0 85.83 189.99 816.81 211.64 156.54 682.92 196.75 357.03 222.20 428.09 232.17 143.90 182.55 288.24 209.47 149.77 178.28 263.63 133.82 222.09 403.01 216.25 234.23 47 E8_Da KnownBoundary 0 14.08 2.76 26.20 9.86 0.00 36.00 6.71 21.07 8.71 26.92 26.74 43.66 54.87 99.48 112.74 67.93 31.60 30.10 30.97 11.19 26.07 46.66 51.47 48 E8a_E9a KnownJunction 0 78.16 330.60 731.11 184.86 214.52 767.80 263.70 326.46 233.94 421.33 215.11 87.48 105.03 232.80 221.28 133.38 141.84 226.92 138.26 227.99 430.16 220.07 252.93 49 ER8b ExonRegion 0 6.43 2.13 13.70 3.23 6.07 23.51 6.15 9.47 4.79 8.16 16.86 18.49 26.41 47.56 34.80 19.03 22.74 11.48 10.65 6.37 20.27 14.80 14.77 50 I8 Intron 0 3.56 4.14 9.98 5.23 9.52 19.81 7.66 6.30 5.61 7.60 9.89 10.44 8.33 23.68 15.05 11.81 11.12 10.28 11.54 8.38 7.77 9.80 13.62 51 I8_SR1 SilentIntronRegion 0 2.62 2.63 7.83 4.54 10.92 23.40 8.41 3.44 4.89 6.21 10.48 10.91 7.66 28.85 16.41 12.59 13.47 10.07 13.04 8.18 7.63 9.18 14.31 52 I8_AR1 ActiveIntronRegion 0 1.82 3.37 10.96 2.23 6.86 15.52 5.74 11.23 5.96 9.91 5.36 7.64 10.52 18.92 16.02 9.29 5.91 10.54 16.67 11.17 2.91 12.71 14.82 53 E9_Aa NovelBoundary 0 11.26 16.64 25.07 21.94 21.90 37.65 9.49 26.49 11.98 9.43 7.48 18.91 8.28 4.94 4.45 7.35 0.00 4.93 13.74 10.74 0.00 5.88 4.35 54 ER9a ExonRegion 0 43.02 75.10 373.65 102.93 82.67 315.82 90.66 200.24 128.32 228.66 131.98 39.48 40.78 146.34 121.11 73.43 68.54 146.32 97.50 100.58 224.39 141.82 130.42 55 ER9b ExonRegion 0 0.00 0.00 3.68 1.36 0.00 3.67 0.00 3.46 0.00 0.00 0.00 0.00 0.00 3.25 5.80 2.97 0.00 0.00 0.00 0.00 0.00 0.00 2.94