Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SLC2A1 Gene 0 41.59 21.90 62.01 21.38 19.67 36.18 26.91 38.74 26.71 138.21 230.05 60.35 40.65 137.34 79.75 92.42 145.37 53.12 46.88 32.20 60.20 42.57 52.86 2 460369 Transcript 0 12.99 0.43 2.51 0.43 1.98 0.39 1.12 1.64 5.24 1.09 9.75 7.11 2.45 0.73 6.90 4.08 2.80 0.00 0.67 1.80 1.63 0.00 2.80 3 372500 Transcript 0 9.78 0.34 4.53 1.86 1.76 0.61 1.95 4.46 6.04 2.57 9.97 4.39 4.26 7.05 6.40 7.85 16.44 2.19 2.65 2.63 2.57 3.12 1.46 4 426263 Transcript 0 13.20 6.04 7.70 0.59 6.18 1.52 4.18 7.82 3.35 25.73 12.30 13.89 2.22 7.50 4.47 3.52 5.48 2.44 3.54 2.13 0.73 2.43 4.18 5 415851 Transcript 0 6.10 0.59 1.05 0.00 0.77 0.80 0.76 1.48 1.33 0.49 7.52 2.16 0.68 3.45 3.84 3.38 8.56 1.59 0.46 1.21 0.95 0.90 1.69 6 372501 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.10 0.00 0.06 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 397019 Transcript 0 1.93 0.00 0.00 0.00 4.41 0.74 2.30 0.00 0.00 0.00 33.60 1.95 4.22 16.07 9.64 15.55 15.80 0.00 9.79 3.32 8.03 4.78 11.10 8 475162 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 439722 Transcript 0 5.79 0.40 1.98 0.17 0.18 0.31 1.18 1.32 1.33 2.35 4.56 0.77 2.56 5.35 3.96 3.40 6.08 2.98 1.73 0.88 1.42 0.51 2.64 10 ER1a ExonRegion 1 43.67 16.00 14.17 7.50 27.29 62.96 77.28 25.87 7.12 56.31 180.28 3.75 3.28 137.83 67.41 107.29 188.81 24.64 41.30 26.24 53.18 31.32 39.25 11 ER1b ExonRegion 1 61.38 20.34 18.38 9.54 40.14 91.69 103.27 32.84 9.88 69.96 239.68 8.66 4.69 183.53 95.74 136.72 264.07 35.11 60.52 36.17 68.31 47.92 58.73 12 ER1c ExonRegion 1 15.97 7.06 44.71 10.25 16.34 21.53 23.18 30.11 20.03 121.37 265.36 25.36 16.16 105.50 66.98 76.77 185.49 56.55 53.32 36.50 64.02 42.90 47.20 13 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.77 0.00 11.27 0.00 0.00 0.00 5.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E1a_E5a KnownJunction 1 6.67 6.58 116.97 28.47 8.15 2.10 12.06 54.83 42.71 289.22 520.87 23.71 6.82 327.27 169.11 214.90 299.95 137.58 134.87 97.35 99.96 91.73 113.02 15 I1_SR1 SilentIntronRegion 0 10.50 1.21 5.53 1.58 4.37 0.76 2.80 4.08 6.51 2.47 4.14 5.06 2.04 1.61 4.06 6.00 5.04 1.21 2.03 2.56 2.60 0.89 4.46 16 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.10 0.00 0.06 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 I2 Intron 0 12.96 1.20 9.03 2.15 2.84 2.16 3.12 8.80 5.20 6.24 4.33 5.43 6.37 2.24 6.57 7.35 7.78 1.30 0.75 1.25 3.37 0.49 7.96 18 I2_AR1 ActiveIntronRegion 0 6.62 0.00 7.50 2.54 0.83 2.39 2.30 11.01 4.45 6.75 3.23 4.80 8.39 2.52 5.45 8.07 10.28 2.54 0.98 1.97 5.53 0.00 10.89 19 I2_SR1 SilentIntronRegion 0 21.51 1.02 12.93 2.55 5.91 2.69 5.00 10.54 6.28 7.81 6.27 5.80 7.56 5.61 7.86 5.75 9.21 0.00 0.00 1.99 2.52 0.60 4.40 20 I2_AR2 ActiveIntronRegion 0 15.62 2.23 9.18 1.74 3.55 1.83 3.24 6.57 5.53 5.41 4.66 5.88 4.44 1.01 7.15 7.33 5.39 0.69 0.80 0.46 1.92 0.86 6.74 21 E3_Aa NovelBoundary 0 19.86 0.00 8.57 3.26 21.14 5.79 12.72 4.76 17.85 10.26 7.26 13.20 13.64 0.00 0.00 20.68 4.02 0.00 0.00 8.63 2.66 0.00 11.87 22 ER3a ExonRegion 0 25.98 0.86 5.02 0.86 3.96 0.78 2.24 3.27 8.72 2.18 8.24 14.23 4.90 1.47 8.11 8.15 5.60 0.00 1.35 3.60 3.26 0.00 5.59 23 E3_Da NovelBoundary 1 81.05 0.00 6.50 0.00 3.74 2.90 4.55 4.19 14.32 3.22 7.00 41.11 13.64 0.00 4.45 0.00 12.34 0.00 3.86 9.59 2.53 3.06 12.38 24 I3 Intron 0 10.78 0.93 3.51 1.03 3.92 0.65 2.19 4.50 5.39 3.34 2.15 4.56 1.87 0.84 2.87 3.92 4.01 0.95 1.95 1.44 2.61 0.50 5.07 25 I3_AR1 ActiveIntronRegion 0 10.85 0.00 3.70 2.58 5.89 3.10 4.00 4.43 9.75 4.80 4.53 9.84 2.90 1.36 6.96 0.38 6.66 0.00 2.03 1.82 0.64 1.36 9.02 26 I3_SR1 SilentIntronRegion 0 11.65 1.05 4.42 1.28 5.75 0.64 2.49 4.75 6.51 3.31 3.34 4.28 2.65 0.96 3.69 5.16 4.76 1.06 1.90 1.93 3.28 0.68 6.17 27 I3_AR5 ActiveIntronRegion 0 19.05 2.91 6.83 1.36 5.35 0.00 3.97 9.38 4.68 2.95 1.93 8.97 0.00 0.00 8.29 3.18 3.30 1.32 0.00 1.52 4.41 0.00 2.94 28 I3_SR3 SilentIntronRegion 0 13.41 0.94 3.13 1.13 2.92 0.45 2.22 4.50 4.13 3.72 0.73 5.77 1.30 0.61 2.41 2.47 3.74 1.35 1.74 1.43 2.54 0.26 5.02 29 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 ER5a ExonRegion 1 15.37 19.02 94.43 27.48 16.14 35.84 16.65 60.35 47.36 233.92 349.05 32.65 38.40 188.26 103.02 162.45 233.95 111.44 76.12 51.00 99.65 65.98 78.62 31 E5a_E6a KnownJunction 0 32.23 24.07 115.22 28.93 49.41 100.79 43.15 72.08 62.96 331.85 408.58 125.59 85.55 248.63 85.54 169.44 202.52 133.19 83.58 58.29 132.76 74.03 60.61 32 I5_AR1 ActiveIntronRegion 0 11.23 0.49 6.41 1.79 2.14 2.15 2.70 6.88 8.14 4.14 5.05 12.24 8.87 2.35 8.48 10.03 10.35 4.36 3.19 2.94 3.32 0.82 11.63 33 I5_AR3 ActiveIntronRegion 0 4.23 0.00 1.23 0.00 0.00 0.00 4.44 6.91 1.41 1.31 6.35 14.23 0.00 1.86 4.97 2.97 5.66 0.26 0.00 2.13 5.98 0.00 2.94 34 I5_SR2 SilentIntronRegion 0 14.01 0.00 3.72 1.73 2.30 0.26 2.70 6.27 4.33 3.17 3.03 5.13 1.93 2.37 3.18 5.20 9.60 3.52 2.11 2.23 4.42 0.51 2.05 35 I5_AR5 ActiveIntronRegion 0 11.68 0.00 8.99 1.94 1.44 1.09 2.78 7.34 5.59 3.50 4.96 4.11 5.55 3.44 6.05 8.18 10.07 2.07 3.95 3.16 5.34 2.15 4.00 36 ER6a ExonRegion 0 46.15 25.39 140.07 27.72 47.02 119.55 97.50 68.19 68.62 336.62 696.95 133.84 78.13 279.05 162.36 161.55 378.23 122.20 102.90 70.60 164.23 112.81 89.39 37 E6_Ab KnownBoundary 0 54.08 35.85 161.67 25.34 31.41 54.68 62.62 83.22 66.90 314.31 507.39 184.11 97.88 327.27 146.86 220.28 364.94 102.06 68.99 48.00 123.74 90.93 86.13 38 ER6b ExonRegion 0 47.10 39.44 118.64 36.52 25.06 48.35 45.20 81.19 67.99 329.06 543.71 190.39 116.42 315.59 161.29 202.89 319.98 98.14 94.35 65.69 158.14 112.91 125.57 39 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 E6a_E7b KnownJunction 0 57.05 41.83 90.12 52.81 48.56 86.77 47.61 98.41 95.66 323.79 573.46 217.27 156.32 286.48 173.93 248.48 330.62 140.78 129.70 76.83 172.91 100.48 115.67 41 E7_Aa NovelBoundary 0 20.60 2.76 5.68 0.00 0.00 4.20 2.25 3.57 4.40 3.25 9.63 0.00 0.00 2.12 5.19 8.63 12.16 1.58 0.00 0.00 5.13 2.63 8.28 42 ER7a ExonRegion 0 14.45 1.19 5.95 0.51 0.54 0.93 2.24 3.30 4.00 6.18 13.68 2.31 4.50 12.26 6.92 9.15 15.40 8.55 5.18 0.88 3.91 1.53 7.91 43 E7_Ab KnownBoundary 0 9.78 3.35 9.02 0.00 0.00 0.00 1.63 4.93 4.22 2.28 4.84 0.00 0.00 7.53 9.64 8.37 0.00 6.67 8.09 0.00 0.00 0.00 0.00 44 E7_Da KnownBoundary 0 61.79 46.18 142.46 38.96 74.28 80.75 55.25 95.58 67.97 267.81 623.84 179.91 121.26 383.07 256.63 259.93 370.83 135.26 146.45 74.40 110.52 137.90 126.76 45 E7a_E7c KnownJunction 0 5.78 0.00 0.00 0.00 13.24 2.21 6.89 0.00 0.00 0.00 100.82 5.85 12.66 48.21 28.93 46.65 47.41 0.00 29.37 9.97 24.09 14.33 33.29 46 ER7b ExonRegion 0 47.59 41.46 128.07 43.00 57.40 78.56 51.63 98.19 82.83 303.45 623.39 175.55 122.24 337.97 198.13 259.92 375.02 145.67 142.83 73.37 145.52 120.91 120.31 47 ER7c ExonRegion 0 50.75 27.10 165.97 40.38 44.37 75.19 42.83 95.23 59.14 294.62 575.60 192.91 127.29 371.43 211.05 217.17 344.14 141.03 118.75 66.16 126.94 99.91 113.37 48 E7_Db KnownBoundary 0 53.64 33.35 153.04 36.56 48.22 70.64 47.65 90.24 46.61 282.00 597.05 262.59 144.63 420.45 231.91 226.27 368.77 119.63 108.61 65.13 152.96 81.93 162.79 49 E7b_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 ER7d ExonRegion 0 35.14 23.60 137.77 46.29 23.74 63.48 38.79 91.03 65.19 293.81 536.73 210.91 118.37 346.63 186.05 237.53 295.56 126.88 94.75 58.70 169.30 94.45 131.40 51 E7_Ac KnownBoundary 0 30.67 19.80 125.99 58.70 18.93 59.97 29.01 114.14 74.83 322.26 510.23 219.07 150.80 271.41 208.91 228.83 266.20 151.80 104.85 54.01 129.79 98.89 152.54 52 ER7e ExonRegion 0 35.01 30.57 135.10 51.82 16.54 40.69 28.76 76.40 54.00 303.30 570.76 156.78 143.79 334.33 186.67 227.81 305.65 135.51 93.83 68.61 144.88 96.77 133.21 53 E7_Dc KnownBoundary 0 22.30 13.68 81.28 36.86 3.23 16.01 8.92 33.72 28.41 157.63 274.07 69.17 31.00 117.49 40.30 122.36 120.62 61.43 37.93 46.79 87.48 34.11 41.23 54 E7c_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 E7_Dd KnownBoundary 0 3.48 0.00 1.83 4.73 4.33 0.00 2.25 0.00 1.77 0.00 7.84 0.00 8.28 0.00 0.00 8.37 4.49 2.03 0.00 0.00 3.03 0.00 0.00 56 E7d_E8a KnownJunction 0 33.93 44.79 178.26 59.57 11.12 45.54 34.36 108.23 62.41 305.53 599.94 100.68 141.39 352.76 151.43 206.61 300.79 126.81 91.11 74.97 171.00 73.85 113.87 57 E7d_E14b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 ER7f ExonRegion 0 41.39 36.60 169.78 64.81 19.92 29.34 31.63 91.03 59.83 284.43 634.85 113.53 128.72 352.25 145.71 236.12 277.64 141.46 80.70 88.42 177.03 74.08 110.29 59 ER7g ExonRegion 0 9.78 0.34 4.53 1.86 1.76 0.61 1.95 4.46 6.04 2.57 9.97 4.39 4.26 7.05 6.40 7.85 16.44 2.19 2.65 2.63 2.57 3.12 1.46 60 ER8a ExonRegion 0 48.02 38.17 161.13 60.15 26.71 77.20 45.73 92.88 55.22 293.96 621.38 123.71 91.57 372.00 142.40 228.27 319.05 172.33 91.80 77.64 151.84 88.50 139.66 61 E8_Ab KnownBoundary 0 60.01 34.20 148.16 66.79 61.88 99.49 64.39 97.92 48.99 351.73 594.78 156.35 81.00 358.35 159.84 250.62 367.55 203.45 117.56 71.97 127.76 116.22 166.46 62 ER8b ExonRegion 0 38.33 34.27 130.62 44.25 45.36 82.16 52.95 80.03 60.16 339.75 579.30 120.46 126.35 364.12 196.46 233.14 332.42 149.23 120.01 67.98 155.62 84.40 129.56 63 E8a_E9a KnownJunction 0 21.56 27.82 147.10 60.43 55.86 70.47 56.88 77.79 57.61 364.33 656.01 132.49 103.08 430.75 239.82 193.97 303.97 114.33 124.33 98.56 152.34 92.34 172.09 64 E9_Aa NovelBoundary 0 6.67 0.00 4.05 0.00 0.00 0.00 2.25 1.68 1.07 1.56 14.27 31.36 0.00 26.72 4.45 13.07 21.22 4.35 9.22 3.26 0.00 2.51 0.00 65 ER9a ExonRegion 0 34.75 30.46 123.81 42.76 28.51 65.15 41.03 61.81 54.90 326.55 473.14 141.81 77.01 294.21 171.82 177.63 314.88 105.63 101.71 77.32 119.14 76.43 111.33 66 E9_Da NovelBoundary 0 36.75 0.00 2.54 0.00 0.00 0.00 8.66 2.05 5.50 4.14 36.54 0.00 0.00 24.31 18.54 0.00 16.74 3.73 0.00 12.27 0.00 2.63 6.91 67 E9a_E11a KnownJunction 0 58.01 52.42 102.45 33.20 65.03 80.92 50.74 78.20 54.54 304.45 559.25 141.20 99.51 404.15 276.66 215.58 312.30 107.57 155.77 94.47 134.43 100.12 150.92 68 ER10a ExonRegion 0 12.20 1.17 2.10 0.00 1.54 1.60 1.53 2.97 2.65 0.98 15.04 4.33 1.35 6.89 7.67 6.77 17.12 3.17 0.92 2.42 1.90 1.80 3.38 69 ER11a ExonRegion 0 64.44 40.79 129.34 45.01 36.64 72.02 53.87 65.01 46.95 278.30 441.79 103.33 57.93 284.65 200.52 209.58 295.26 105.59 95.62 77.83 136.90 85.86 113.05 70 E11_Da KnownBoundary 0 10.82 0.00 0.00 0.00 0.00 0.00 0.00 2.26 0.00 4.46 0.00 0.00 0.00 2.47 13.35 4.36 0.00 4.10 0.00 0.00 2.35 0.00 0.00 71 E11a_E12a KnownJunction 0 80.90 63.21 164.07 83.34 52.89 110.96 78.65 72.00 42.62 315.84 432.37 116.89 58.28 247.10 191.73 262.50 368.21 120.75 105.23 97.54 125.04 82.91 121.73 72 ER11b ExonRegion 0 2.94 0.00 0.00 0.00 0.00 0.00 1.30 0.67 0.00 0.87 0.00 0.00 3.18 1.34 4.96 1.05 2.82 0.39 0.00 1.75 0.36 0.00 0.00 73 ER12a ExonRegion 0 62.23 37.96 108.52 50.92 46.04 93.49 60.37 75.76 40.21 279.69 462.65 123.01 53.06 283.95 201.89 207.15 285.53 95.45 98.68 69.25 127.02 86.10 100.57 74 E12a_E13a KnownJunction 0 124.84 42.69 147.60 58.07 99.92 111.36 75.96 96.11 57.29 306.20 571.51 140.30 74.35 394.37 231.04 271.72 346.52 112.17 66.54 112.24 131.52 113.16 90.48 75 ER13a ExonRegion 0 85.27 52.51 173.13 69.01 55.39 88.44 52.92 122.31 67.13 339.82 573.96 128.91 89.36 334.91 206.64 238.75 363.73 137.99 125.29 83.81 154.56 118.99 137.53 76 E13a_E14a KnownJunction 0 151.14 86.23 207.74 76.68 61.88 109.77 94.86 137.31 75.87 408.84 646.58 149.45 60.39 305.73 200.88 214.22 394.48 135.39 103.16 103.16 158.34 157.37 147.25 77 E14_Aa NovelBoundary 0 51.56 0.00 0.00 2.06 3.40 2.84 3.89 3.90 1.10 4.19 7.11 0.00 6.33 6.59 15.58 16.15 8.70 0.00 0.00 5.94 2.59 0.00 0.00 78 ER14a ExonRegion 0 125.63 68.69 147.09 48.81 50.73 84.22 61.95 88.73 53.65 298.70 438.42 133.93 93.27 294.37 149.51 180.43 307.90 97.73 95.78 63.83 114.38 90.90 112.78 79 E14_Ab KnownBoundary 0 68.60 33.74 91.84 26.97 31.66 88.87 24.78 45.59 29.05 166.62 225.43 43.21 50.32 185.30 66.38 90.06 159.05 46.68 86.12 67.43 91.37 53.09 43.11 80 ER14b ExonRegion 0 57.09 35.62 27.57 10.33 18.08 53.50 39.54 13.24 8.21 48.08 36.93 35.25 32.52 65.75 43.42 44.43 42.28 17.57 23.54 11.19 11.88 23.34 21.48 81 E14_Da KnownBoundary 0 214.19 133.00 6.50 3.26 23.34 93.53 55.03 8.54 6.74 22.99 46.06 17.41 22.73 6.95 0.00 10.77 17.77 4.48 17.32 2.49 2.97 8.57 3.84 82 ER14c ExonRegion 0 46.45 14.24 7.65 5.05 6.32 9.22 11.80 7.32 3.66 15.44 13.03 4.39 3.61 8.80 6.80 5.64 4.98 2.20 3.12 2.03 0.70 3.48 4.77 83 E14_Db KnownBoundary 0 20.00 29.86 10.73 3.76 0.00 0.00 8.66 8.13 7.93 23.77 14.37 5.85 6.66 16.89 19.53 11.79 0.00 0.00 4.42 0.00 0.00 6.18 4.35 84 ER14d ExonRegion 0 13.20 6.04 7.70 0.59 6.18 1.52 4.18 7.82 3.35 25.73 12.30 13.89 2.22 7.50 4.47 3.52 5.48 2.44 3.54 2.13 0.73 2.43 4.18