Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LRRC42 Gene 0 33.94 23.96 75.32 30.20 67.92 164.05 68.95 83.36 60.82 127.88 151.66 64.16 33.56 106.18 88.43 85.63 88.89 93.58 158.88 28.45 111.16 103.22 67.59 2 371370 Transcript 1 0.65 0.12 10.86 1.32 2.20 7.87 3.50 12.91 7.59 23.26 36.04 2.19 0.94 26.06 24.29 10.85 28.87 26.91 41.22 8.27 32.04 17.76 9.88 3 371368 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 319223 Transcript 1 3.70 0.00 6.36 2.06 4.33 26.69 0.00 17.37 9.00 28.98 51.70 6.30 0.00 22.01 32.14 26.75 12.34 14.88 15.53 8.95 57.51 36.62 18.35 5 444987 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 477905 Transcript 0 1.06 0.61 4.34 1.04 5.76 8.62 4.59 6.53 4.29 10.80 5.73 4.63 4.16 4.15 2.97 5.58 2.23 4.17 8.26 1.59 1.60 6.38 3.37 7 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 2.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 2.14 0.00 0.00 1.59 1.24 0.78 16.16 0.00 0.00 3.25 2.55 0.00 0.00 0.00 5.99 0.00 6.61 0.00 1.17 9 ER1c ExonRegion 0 0.00 0.00 0.89 0.00 0.00 0.92 0.59 0.54 1.37 2.68 6.39 0.00 0.00 1.25 1.43 1.17 2.27 0.37 5.34 0.00 4.24 0.06 0.50 10 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.45 3.85 0.00 2.49 4.05 0.00 2.35 0.00 0.00 11 E1_Ad KnownBoundary 0 0.00 2.50 1.77 0.00 0.00 11.19 1.72 0.00 0.00 4.24 6.16 0.00 0.00 0.00 0.00 3.33 7.85 4.73 3.58 0.00 7.41 2.57 0.00 12 ER1d ExonRegion 0 0.00 0.00 1.23 0.00 0.00 9.17 2.65 0.00 0.00 3.44 8.12 0.00 0.00 0.65 2.90 8.92 6.60 3.70 12.74 0.00 12.34 3.33 0.00 13 ER1e ExonRegion 1 17.56 6.64 5.64 2.70 21.67 142.73 35.37 8.51 4.51 16.94 41.91 0.00 2.16 25.72 23.40 29.82 23.29 35.29 42.84 11.15 33.59 29.63 46.18 14 E1_Ae KnownBoundary 1 31.04 22.36 13.04 2.03 100.93 700.79 144.41 17.29 11.11 35.05 68.96 0.00 0.00 38.26 51.55 43.75 51.71 57.16 96.76 11.63 84.20 38.09 57.88 15 ER1f ExonRegion 1 13.91 9.52 15.53 2.48 28.76 351.03 72.41 34.78 17.93 45.05 69.76 3.03 0.19 26.51 26.14 31.50 40.30 71.97 85.78 14.36 70.96 27.67 26.31 16 E1b_E2a KnownJunction 1 0.00 0.00 5.17 1.76 0.00 2.10 5.83 11.46 7.78 18.94 36.22 10.95 0.00 34.26 19.28 0.00 28.42 19.77 16.94 8.37 27.99 6.25 0.00 17 E1b_E3a KnownJunction 0 0.00 0.00 5.32 1.50 0.00 13.12 0.00 6.04 5.38 4.43 31.59 0.00 0.00 3.00 0.00 0.00 13.00 6.18 0.00 2.68 20.08 2.76 0.00 18 E1b_E4a KnownJunction 0 3.70 0.00 6.36 2.06 4.33 26.69 0.00 17.37 9.00 28.98 51.70 6.30 0.00 22.01 32.14 26.75 12.34 14.88 15.53 8.95 57.51 36.62 18.35 19 ER2a ExonRegion 1 0.44 0.60 17.62 1.52 3.46 13.86 4.13 21.10 12.75 38.89 58.33 0.00 4.69 42.23 33.62 15.39 44.17 45.00 60.05 12.01 50.81 26.47 12.78 20 E2a_E4a KnownJunction 1 2.82 0.00 30.60 3.30 7.56 22.49 6.98 31.46 14.79 55.79 79.28 0.00 0.00 49.86 67.12 37.68 69.47 69.39 123.77 20.96 77.16 56.03 36.11 21 ER3a ExonRegion 0 1.82 5.49 8.62 5.60 6.33 9.31 4.26 10.76 7.49 14.62 23.47 4.44 3.28 5.79 7.01 5.92 12.71 27.78 20.25 3.51 21.63 9.93 12.11 22 E3a_E4a KnownJunction 0 0.00 8.16 11.83 10.65 4.33 11.24 2.25 9.78 10.16 25.63 19.37 12.60 0.00 2.12 4.45 12.73 13.37 29.68 44.80 0.00 14.70 7.90 12.46 23 ER4a ExonRegion 0 36.88 26.66 87.88 38.38 74.67 222.74 88.59 95.62 77.72 176.36 263.93 65.14 31.41 175.58 106.42 133.45 161.33 178.98 233.43 42.82 216.60 151.21 107.80 24 E4a_E5a KnownJunction 0 44.45 50.58 137.07 24.81 134.80 253.09 170.20 85.68 65.07 181.61 219.32 100.83 40.09 208.78 103.22 138.08 105.10 161.67 212.34 17.07 174.15 120.20 90.57 25 E4a_E6a NovelJunction 0 3.63 3.35 4.49 0.00 0.00 11.24 0.00 4.48 7.55 2.36 14.42 0.00 0.00 0.00 6.06 3.85 4.68 6.22 0.00 0.00 0.00 0.00 10.76 26 ER5a ExonRegion 0 51.20 41.24 123.90 48.87 136.21 252.38 146.83 113.25 77.27 189.77 268.67 115.40 44.37 215.15 133.07 152.32 145.24 158.75 291.15 42.45 206.28 146.63 119.50 27 E5_Da NovelBoundary 0 63.49 40.72 111.94 70.32 105.01 231.00 152.85 129.01 101.71 205.57 247.06 78.93 46.75 192.95 163.79 140.31 148.48 166.10 226.92 40.84 136.53 153.21 96.89 28 E5b_E6a KnownJunction 0 57.79 65.12 163.71 66.26 133.02 255.02 171.84 121.54 94.70 233.75 255.43 123.19 60.87 163.52 134.74 142.61 130.81 176.76 285.09 42.70 185.08 201.27 127.53 29 ER5b ExonRegion 0 45.20 46.77 127.09 64.20 104.64 224.57 137.46 121.30 97.93 218.53 267.98 119.06 53.27 170.13 142.99 136.19 127.67 176.59 241.52 35.79 156.86 167.95 107.61 30 ER6a ExonRegion 0 53.68 58.74 165.90 53.44 105.68 224.86 109.01 151.69 106.78 223.45 276.71 116.21 72.14 187.48 146.14 175.09 147.63 156.58 306.98 55.34 176.24 176.71 110.92 31 E6_Da NovelBoundary 0 20.52 28.74 91.69 25.57 36.16 95.80 67.66 81.20 59.06 115.48 116.56 94.38 66.07 65.57 73.43 54.34 90.42 67.57 131.49 17.51 81.18 81.44 43.79 32 E6b_E7b KnownJunction 0 71.05 78.60 158.57 58.73 178.35 348.78 145.87 142.61 104.77 241.06 280.54 128.29 80.35 192.54 185.55 122.62 185.88 108.15 354.74 65.39 175.88 146.53 149.56 33 ER6b ExonRegion 0 50.09 56.94 141.33 49.97 138.69 320.30 132.18 131.07 103.96 230.53 280.27 160.91 103.96 195.98 169.72 117.40 191.45 110.86 295.71 53.90 165.28 159.39 133.62 34 ER7a ExonRegion 0 1.03 0.74 3.89 0.61 6.17 12.39 3.05 6.28 3.86 10.80 4.67 3.59 4.46 6.44 3.26 7.68 2.58 4.37 11.54 0.86 1.99 6.28 2.33 35 E7_Ab KnownBoundary 0 3.04 0.00 5.50 0.00 12.31 26.58 5.83 13.55 4.75 18.56 5.26 11.70 6.82 3.00 0.00 15.81 4.58 6.38 0.00 2.43 0.00 9.25 4.18 36 ER7b ExonRegion 0 93.15 53.13 162.35 66.32 172.86 351.53 167.51 144.13 121.31 241.53 274.01 156.94 63.53 198.27 163.62 159.72 160.06 143.20 268.40 57.42 173.37 142.74 130.51 37 E7_Da KnownBoundary 0 0.00 0.00 0.00 0.00 12.56 2.38 16.61 0.00 3.73 6.96 0.00 18.46 0.00 0.00 0.00 0.00 0.00 3.77 9.51 2.56 0.00 10.65 3.93 38 E7a_E7c KnownJunction 0 123.36 62.36 227.61 86.60 191.34 431.80 210.66 201.18 139.09 236.68 258.12 161.60 88.79 191.89 179.37 210.03 150.44 223.60 265.42 62.89 233.15 141.14 147.76 39 ER7c ExonRegion 0 1.09 0.47 4.80 1.46 5.35 4.86 6.13 6.78 4.72 10.81 6.80 5.67 3.85 1.87 2.68 3.48 1.88 3.97 4.98 2.32 1.22 6.48 4.42 40 E7_Ac KnownBoundary 0 6.45 3.09 9.49 3.76 4.24 13.40 10.55 15.90 5.96 4.11 9.74 0.00 0.00 4.94 8.90 4.36 0.00 5.89 13.46 2.94 0.00 14.57 0.00 41 ER7d ExonRegion 0 84.89 47.94 146.03 55.08 141.60 324.11 138.97 148.48 111.47 217.17 242.28 152.95 76.58 204.21 170.48 178.56 157.95 175.63 289.59 58.58 209.61 172.56 142.88 42 E7b_E8a KnownJunction 0 56.16 38.35 119.87 42.52 86.76 220.10 132.80 98.29 85.71 184.92 262.17 113.59 101.62 157.28 140.43 121.76 116.50 126.23 234.36 52.99 184.65 117.94 108.50 43 ER8a ExonRegion 0 46.24 28.95 104.81 33.29 79.08 202.71 90.04 88.46 82.84 162.36 186.22 107.98 49.94 161.51 148.34 125.56 103.88 122.63 193.82 45.33 177.90 108.51 72.28 44 E8a_E9a KnownJunction 1 25.93 42.36 139.94 49.28 106.88 354.45 91.95 124.62 87.27 213.98 160.57 117.94 6.49 189.71 192.22 143.64 136.61 183.89 305.70 54.07 200.96 139.49 106.96 45 I8_AR2 ActiveIntronRegion 0 9.32 4.67 4.82 6.38 4.78 23.29 9.21 17.76 8.91 7.88 9.21 1.57 1.50 3.25 5.99 1.39 0.00 0.67 2.17 1.90 0.00 2.97 1.69 46 E9_Aa NovelBoundary 0 37.12 0.00 11.56 11.65 20.80 31.18 18.02 27.60 17.25 18.00 5.37 0.00 0.00 2.12 4.94 11.36 4.77 14.51 24.00 3.26 6.30 6.25 4.35 47 ER9a ExonRegion 0 64.57 50.28 124.74 44.38 156.78 294.28 118.60 142.51 103.71 217.53 191.05 102.78 47.31 195.13 168.61 167.43 158.63 158.56 274.50 39.72 209.29 165.53 128.70 48 E9_Da KnownBoundary 0 38.38 80.97 132.34 42.12 186.16 274.33 132.75 199.33 112.21 240.82 238.22 59.87 19.80 207.55 146.12 135.09 119.59 131.08 261.56 34.90 170.26 158.35 138.63 49 ER9b ExonRegion 0 48.82 31.73 113.53 49.27 95.54 161.53 73.56 152.60 98.38 190.24 158.76 101.25 62.47 103.22 138.39 83.20 85.57 65.29 192.76 31.53 71.61 166.47 67.10